Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47082 * 2 1 4 4 C 1.50693 * 109.47438 * 180.02562 * 3 2 1 5 5 N 1.35052 * 126.38014 * 264.98190 * 4 3 2 6 6 H 0.97000 * 124.87975 * 359.97438 * 5 4 3 7 7 N 1.28466 * 110.23893 * 179.97438 * 5 4 3 8 8 C 1.31852 * 110.06711 * 359.97438 * 7 5 4 9 9 C 1.47586 * 126.52638 * 179.97438 * 8 7 5 10 10 O 1.21493 * 120.00179 * 180.02562 * 9 8 7 11 11 O 1.34732 * 119.99737 * 359.74272 * 9 8 7 12 12 C 1.45202 * 116.99693 * 180.27280 * 11 9 8 13 13 C 1.50701 * 109.46859 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00011 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00119 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00208 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46977 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00615 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00005 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99809 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00244 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47407 * 89.99917 * 21 19 17 23 23 H 1.48503 * 109.46986 * 210.00287 * 21 19 17 24 24 H 1.48508 * 109.46837 * 329.99792 * 21 19 17 25 25 C 1.35348 * 126.38217 * 85.26947 * 4 3 2 26 26 N 1.48019 * 127.24498 * 0.02888 * 25 4 3 27 27 O 1.21799 * 120.00194 * 270.15117 * 26 25 4 28 28 O 1.21801 * 120.00074 * 90.15363 * 26 25 4 29 29 H 1.09005 * 109.47150 * 299.99462 * 1 2 3 30 30 H 1.08993 * 109.47838 * 59.99884 * 1 2 3 31 31 H 1.09004 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46665 * 240.00526 * 2 1 3 33 33 H 1.08997 * 109.47222 * 119.99773 * 2 1 3 34 34 H 1.09000 * 109.47236 * 59.99782 * 3 2 1 35 35 H 1.09006 * 109.47096 * 300.00570 * 3 2 1 36 36 H 1.08998 * 109.47630 * 300.00508 * 12 11 9 37 37 H 1.09004 * 109.46770 * 60.00912 * 12 11 9 38 38 H 0.97009 * 119.99606 * 0.02562 * 15 13 12 39 39 H 1.09006 * 109.46984 * 300.00038 * 16 15 13 40 40 H 1.08996 * 109.47033 * 60.00213 * 16 15 13 41 41 H 0.96997 * 119.99451 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3484 1.5376 1.0822 6 1 4.0371 1.6181 1.9973 7 7 5.5823 1.5059 0.7259 8 6 5.6720 1.3901 -0.5844 9 6 6.9150 1.3205 -1.3771 10 8 6.8594 1.2141 -2.5860 11 8 8.1114 1.3806 -0.7604 12 6 9.2916 1.3123 -1.6034 13 6 10.5275 1.3933 -0.7448 14 8 10.4238 1.4977 0.4589 15 7 11.7481 1.3496 -1.3148 16 6 12.9495 1.4277 -0.4802 17 6 14.1744 1.3582 -1.3552 18 1 14.0687 1.2647 -2.4260 19 6 15.4303 1.4129 -0.7888 20 7 15.5592 1.5263 0.5152 21 14 16.9487 1.3275 -1.8734 22 1 17.3442 2.6998 -2.2804 23 1 18.0607 0.6949 -1.1194 24 1 16.6482 0.5197 -3.0829 25 6 4.3493 1.3529 -1.0869 26 7 3.9314 1.2366 -2.5021 27 8 3.7565 0.1375 -2.9971 28 8 3.7626 2.2399 -3.1717 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 9.2921 0.3707 -2.1524 37 1 9.2833 2.1438 -2.3081 38 1 11.8310 1.2664 -2.2777 39 1 12.9492 2.3689 0.0699 40 1 12.9576 0.5955 0.2237 41 1 16.4427 1.5644 0.9136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796260060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -80.842370 kcal Electronic energy + Delta-G solvation = -28473.097074 eV Core-core repulsion = 23971.422694 eV Total energy + Delta-G solvation = -4501.674379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.86512 -43.02643 -41.89949 -40.45222 -37.93156 -37.72445 -36.70775 -36.22620 -34.44926 -34.17053 -32.88609 -30.97753 -29.00029 -28.52817 -27.19822 -26.32183 -24.57962 -23.26478 -22.58883 -22.13191 -21.72974 -20.29366 -20.01925 -19.47431 -19.07325 -18.86851 -18.26543 -18.09717 -17.97255 -17.30668 -17.26887 -16.97252 -16.24993 -16.12275 -16.07283 -15.32325 -14.80825 -14.68643 -14.33546 -14.21265 -13.95373 -13.77570 -13.54677 -12.96683 -12.95651 -12.91907 -12.73828 -12.72913 -12.51627 -12.43083 -12.37913 -12.33109 -12.24190 -12.16528 -11.74877 -11.51458 -11.50346 -10.99981 -10.95949 -10.83153 -9.97125 -8.30834 -6.47441 -0.78236 -0.55945 -0.07448 -0.03626 0.66829 1.26622 1.35781 1.44244 1.45567 1.48656 1.57243 2.20602 2.40995 2.66115 2.82339 3.04556 3.08693 3.39324 3.57792 3.72394 3.83400 3.93126 3.93595 3.95577 4.35495 4.53586 4.59411 4.70907 4.79786 5.00025 5.05825 5.11307 5.16916 5.19800 5.30333 5.38072 5.38402 5.59839 5.80170 5.86678 6.12305 6.29952 6.60574 6.72400 7.17460 7.31641 8.81223 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028520 B = 0.001866 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.538362 B =15002.220839 C =15689.924388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.068 4.068 4 C 0.136 3.864 5 N -0.324 5.324 6 H 0.487 0.513 7 N -0.197 5.197 8 C 0.033 3.967 9 C 0.550 3.450 10 O -0.504 6.504 11 O -0.323 6.323 12 C 0.057 3.943 13 C 0.502 3.498 14 O -0.581 6.581 15 N -0.696 5.696 16 C 0.266 3.734 17 C -0.558 4.558 18 H 0.086 0.914 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.985 3.015 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.256 1.256 25 C -0.126 4.126 26 N 0.059 4.941 27 O -0.135 6.135 28 O -0.140 6.140 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.413 0.587 39 H -0.006 1.006 40 H -0.006 1.006 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.367 -0.846 -0.359 33.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.107 4.107 4 C 0.006 3.994 5 N -0.045 5.045 6 H 0.341 0.659 7 N -0.034 5.034 8 C -0.127 4.127 9 C 0.391 3.609 10 O -0.390 6.390 11 O -0.237 6.237 12 C -0.019 4.019 13 C 0.287 3.713 14 O -0.461 6.461 15 N -0.348 5.348 16 C 0.144 3.856 17 C -0.596 4.596 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.809 3.191 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.180 1.180 25 C -0.219 4.219 26 N 0.590 4.410 27 O -0.359 6.359 28 O -0.362 6.362 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.162 0.838 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.250 0.750 39 H 0.012 0.988 40 H 0.012 0.988 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -32.343 -0.639 1.972 32.409 hybrid contribution 0.755 -0.107 -1.276 1.486 sum -31.588 -0.746 0.696 31.605 Atomic orbital electron populations 1.21743 0.93123 1.02863 1.02996 1.21602 0.97961 0.93561 1.03192 1.20927 0.80865 1.00743 1.08120 1.21449 0.97021 0.97214 0.83744 1.43455 1.01028 1.48722 1.11305 0.65867 1.74103 1.02700 1.15144 1.11428 1.20210 0.89830 1.12212 0.90455 1.19584 0.83052 0.73081 0.85138 1.90949 1.87742 1.45983 1.14344 1.86646 1.13780 1.82608 1.40633 1.22984 0.79507 1.07870 0.91585 1.20503 0.85246 0.77100 0.88408 1.90699 1.87355 1.51141 1.16908 1.46023 1.04795 1.71907 1.12035 1.18653 0.81603 0.94672 0.90666 1.21617 0.90601 1.52700 0.94678 0.89558 1.26047 1.03053 0.93815 0.96554 1.70133 1.25082 1.49501 1.12064 0.85145 0.76981 0.78698 0.78320 1.19638 1.20985 1.17972 1.20486 0.93295 1.24393 0.83698 1.42283 0.97325 1.00176 1.01186 1.94567 1.53127 1.14445 1.73769 1.94571 1.53548 1.28029 1.60067 0.90545 0.92535 0.91983 0.93052 0.89901 0.83834 0.88348 0.85026 0.85015 0.75002 0.98845 0.98825 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.91 71.98 0.71 0.25 16 2 C -0.12 -0.63 5.92 30.59 0.18 -0.45 16 3 C -0.07 -0.26 5.77 29.85 0.17 -0.09 16 4 C 0.14 1.53 6.48 41.39 0.27 1.80 16 5 N -0.32 -3.07 6.83 -47.93 -0.33 -3.39 16 6 H 0.49 -0.41 8.96 -219.99 -1.97 -2.38 16 7 N -0.20 -4.08 12.24 -48.22 -0.59 -4.67 16 8 C 0.03 0.85 7.17 42.42 0.30 1.15 16 9 C 0.55 16.91 7.97 70.29 0.56 17.47 16 10 O -0.50 -16.76 16.26 19.86 0.32 -16.44 16 11 O -0.32 -10.77 9.77 -50.03 -0.49 -11.26 16 12 C 0.06 1.70 5.95 71.24 0.42 2.13 16 13 C 0.50 20.39 7.91 87.66 0.69 21.08 16 14 O -0.58 -29.54 16.50 15.79 0.26 -29.28 16 15 N -0.70 -28.88 5.55 -466.80 -2.59 -31.47 16 16 C 0.27 14.40 5.43 85.63 0.46 14.87 16 17 C -0.56 -29.92 9.28 25.60 0.24 -29.69 16 18 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.01 0.28 5.46 84.66 0.46 0.75 16 20 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 21 Si 0.99 42.00 29.54 68.60 2.03 44.03 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 25 C -0.13 -2.71 6.75 36.52 0.25 -2.47 16 26 N 0.06 1.51 3.94 -46.11 -0.18 1.33 16 27 O -0.14 -3.70 19.25 18.89 0.36 -3.34 16 28 O -0.14 -3.84 19.25 18.89 0.36 -3.47 16 29 H 0.08 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.14 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.13 3.24 8.14 -2.38 -0.02 3.22 16 38 H 0.41 13.78 8.32 -92.70 -0.77 13.01 16 39 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -84.53 380.46 2.54 -81.99 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -1.63 Total: 4.38 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 4.73 Total: 26.81 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -3.40 Total: -93.41 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: 0.82 Total: -63.79 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -84.53 2.54 -81.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796260060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.146 kcal (2) G-P(sol) polarization free energy of solvation -84.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds