Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00185 * 2 1 4 4 H 1.48498 * 109.47019 * 275.41240 * 3 2 1 5 5 H 1.48493 * 109.47000 * 35.41215 * 3 2 1 6 6 H 1.48500 * 109.47040 * 155.41309 * 3 2 1 7 7 C 1.39939 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99809 * 341.73670 * 7 2 1 9 9 C 1.41429 * 119.99997 * 161.73141 * 7 2 1 10 10 C 1.40787 * 120.17898 * 330.17841 * 9 7 2 11 11 C 1.37712 * 120.03950 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41453 * 359.97438 * 11 10 9 13 13 C 1.39879 * 120.35589 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02230 * 180.02562 * 13 12 11 15 15 O 1.21549 * 120.00033 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00272 * 0.02562 * 14 13 12 17 17 C 1.46504 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46748 * 180.02562 * 17 16 14 19 19 C 1.38366 * 119.84776 * 269.72462 * 18 17 16 20 20 C 1.37964 * 120.14148 * 179.72925 * 19 18 17 21 21 C 1.39573 * 119.85008 * 0.54376 * 20 19 18 22 22 C 1.47842 * 120.14312 * 179.70823 * 21 20 19 23 23 O 1.21562 * 120.00161 * 180.02562 * 22 21 20 24 24 N 1.34773 * 120.00161 * 0.02562 * 22 21 20 25 25 O 1.41601 * 120.00475 * 180.02562 * 24 22 21 26 26 C 1.39576 * 119.71365 * 359.72871 * 21 20 19 27 27 C 1.37961 * 119.85402 * 0.02562 * 26 21 20 28 28 C 1.39033 * 119.95088 * 0.02670 * 13 12 11 29 29 H 0.97011 * 119.99600 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.98166 * 0.02819 * 10 9 7 31 31 H 1.08002 * 119.79407 * 180.02562 * 11 10 9 32 32 H 1.08006 * 119.82258 * 179.97438 * 12 11 10 33 33 H 0.96998 * 120.00109 * 359.97438 * 16 14 13 34 34 H 1.09004 * 109.46922 * 300.00033 * 17 16 14 35 35 H 1.08997 * 109.47180 * 60.00162 * 17 16 14 36 36 H 1.07998 * 119.93115 * 0.02562 * 19 18 17 37 37 H 1.07994 * 120.07446 * 180.25100 * 20 19 18 38 38 H 0.97005 * 119.99945 * 359.97438 * 24 22 21 39 39 H 0.96693 * 114.00677 * 180.02562 * 25 24 22 40 40 H 1.08002 * 120.07446 * 179.97438 * 26 21 20 41 41 H 1.08001 * 119.92593 * 179.97438 * 27 26 21 42 42 H 1.07996 * 120.20059 * 180.25241 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5017 2.6169 0.8112 6 1 3.5923 1.4098 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3687 -1.2430 -0.3834 10 6 3.8624 -0.3111 -1.3162 11 6 5.1878 -0.3443 -1.6884 12 6 6.0430 -1.2898 -1.1505 13 6 5.5708 -2.2230 -0.2216 14 6 6.4914 -3.2300 0.3490 15 8 6.0806 -4.0410 1.1557 16 7 7.7860 -3.2485 -0.0256 17 6 8.6978 -4.2464 0.5393 18 6 10.0758 -4.0519 -0.0388 19 6 10.4382 -4.7201 -1.1949 20 6 11.6963 -4.5421 -1.7325 21 6 12.6080 -3.6946 -1.1011 22 6 13.9601 -3.5042 -1.6680 23 8 14.7523 -2.7659 -1.1158 24 7 14.3145 -4.1492 -2.7971 25 8 15.6096 -3.9673 -3.3398 26 6 12.2379 -3.0280 0.0680 27 6 10.9750 -3.2108 0.5923 28 6 4.2354 -2.2031 0.1648 29 1 -0.4850 0.8402 0.0004 30 1 3.2013 0.4302 -1.7400 31 1 5.5624 0.3727 -2.4039 32 1 7.0807 -1.3074 -1.4495 33 1 8.1138 -2.6015 -0.6697 34 1 8.7386 -4.1295 1.6223 35 1 8.3387 -5.2461 0.2951 36 1 9.7332 -5.3786 -1.6802 37 1 11.9766 -5.0611 -2.6371 38 1 13.6824 -4.7387 -3.2376 39 1 15.7709 -4.4702 -4.1498 40 1 12.9389 -2.3712 0.5615 41 1 10.6875 -2.6959 1.4971 42 1 3.8675 -2.9191 0.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798130215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -22.718509 kcal Electronic energy + Delta-G solvation = -26908.277934 eV Core-core repulsion = 22819.973258 eV Total energy + Delta-G solvation = -4088.304676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64891 -39.61370 -38.77497 -37.35147 -36.81461 -34.93463 -33.74138 -32.92706 -31.65750 -31.15268 -30.44558 -30.01109 -26.90749 -25.19503 -23.52956 -23.14484 -22.44761 -20.98056 -20.69994 -20.10306 -19.88989 -18.17975 -17.79894 -16.63409 -16.28116 -15.92838 -15.79296 -15.58296 -15.54497 -15.22597 -14.72444 -14.54739 -14.41561 -14.05043 -13.76891 -13.73439 -13.55917 -13.34932 -12.82224 -12.80302 -12.70415 -12.67351 -12.05116 -11.95468 -11.64525 -11.52849 -11.08635 -10.82325 -10.58928 -10.55520 -10.06285 -9.80106 -9.68553 -9.56083 -9.48833 -9.32991 -9.11172 -8.97719 -7.91809 -7.80432 -7.04117 -4.59155 0.25218 0.88392 1.46964 1.85335 2.32622 2.47523 3.02797 3.15013 3.22968 3.23330 3.55078 3.66305 3.90000 3.95692 4.20510 4.34197 4.42230 4.44833 4.55864 4.83482 4.87791 5.16849 5.27872 5.30362 5.37518 5.54876 5.64189 5.71963 5.79940 5.83521 5.97760 6.10536 6.34283 6.34665 6.42013 6.51803 6.61929 6.64826 6.80061 6.93259 7.16270 7.35450 7.45216 7.68948 7.72787 7.75554 7.94639 8.24333 8.48777 8.59704 8.67814 9.97882 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.001929 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.080541 B =14511.567882 C =15120.364614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.221 4.221 11 C -0.083 4.083 12 C -0.217 4.217 13 C -0.109 4.109 14 C 0.565 3.435 15 O -0.546 6.546 16 N -0.731 5.731 17 C 0.156 3.844 18 C -0.071 4.071 19 C -0.105 4.105 20 C -0.089 4.089 21 C -0.124 4.124 22 C 0.573 3.427 23 O -0.516 6.516 24 N -0.594 5.594 25 O -0.314 6.314 26 C -0.055 4.055 27 C -0.104 4.104 28 C -0.136 4.136 29 H 0.287 0.713 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.402 0.598 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.408 0.592 39 H 0.389 0.611 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.869 -7.877 -6.594 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.240 4.240 11 C -0.101 4.101 12 C -0.237 4.237 13 C -0.112 4.112 14 C 0.356 3.644 15 O -0.424 6.424 16 N -0.386 5.386 17 C 0.033 3.967 18 C -0.072 4.072 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.128 4.128 22 C 0.362 3.638 23 O -0.390 6.390 24 N -0.292 5.292 25 O -0.210 6.210 26 C -0.074 4.074 27 C -0.123 4.123 28 C -0.156 4.156 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.238 0.762 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.249 0.751 39 H 0.233 0.767 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.912 -7.456 -5.046 24.618 hybrid contribution 0.296 0.382 -1.385 1.467 sum 23.209 -7.074 -6.432 25.101 Atomic orbital electron populations 1.69693 1.08099 1.30426 1.34345 1.26175 0.94766 1.01775 0.90934 0.86311 0.81392 0.79721 0.78884 1.19544 1.21612 1.16679 1.19522 0.92925 0.96340 1.38195 0.88814 1.17700 0.93170 0.91076 0.90224 1.21187 0.95688 1.04281 1.02877 1.20515 0.93747 0.97311 0.98557 1.20376 0.97984 1.00744 1.04554 1.19389 0.94194 0.97056 1.00526 1.18811 0.81214 0.83934 0.80486 1.90710 1.76670 1.40698 1.34318 1.45967 1.09290 1.35643 1.47653 1.20203 0.84535 0.93538 0.98453 1.20256 0.95796 0.96038 0.95102 1.21095 0.96143 0.99732 0.95412 1.21245 0.93562 0.96972 0.99029 1.19569 0.92375 1.02445 0.98422 1.18222 0.87271 0.79758 0.78584 1.90822 1.52015 1.36738 1.59443 1.46747 1.05597 1.50138 1.26675 1.89274 1.13793 1.71434 1.46487 1.21268 0.96226 0.96610 0.93283 1.21192 0.92714 0.97826 1.00540 1.21267 0.91031 1.01969 1.01311 0.90278 0.87875 0.88277 0.88648 0.76183 0.90334 0.90369 0.84641 0.85564 0.75107 0.76669 0.84109 0.84455 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.81 13.93 55.55 0.77 -20.04 16 2 C 0.08 2.12 5.40 -17.34 -0.09 2.02 16 3 Si 0.91 20.03 24.52 -169.99 -4.17 15.87 16 4 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.24 -5.49 6.86 56.52 0.39 -5.10 16 7 C -0.44 -11.66 9.57 -37.73 -0.36 -12.02 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.08 2.00 5.10 -106.87 -0.55 1.46 16 10 C -0.22 -5.03 7.17 -38.81 -0.28 -5.30 16 11 C -0.08 -1.64 10.01 -39.72 -0.40 -2.04 16 12 C -0.22 -4.02 9.55 -38.92 -0.37 -4.39 16 13 C -0.11 -2.22 5.87 -105.04 -0.62 -2.84 16 14 C 0.57 10.38 7.77 -12.31 -0.10 10.28 16 15 O -0.55 -11.63 16.33 5.32 0.09 -11.54 16 16 N -0.73 -9.74 5.50 -62.41 -0.34 -10.08 16 17 C 0.16 1.66 5.79 -5.19 -0.03 1.63 16 18 C -0.07 -0.59 5.25 -104.53 -0.55 -1.14 16 19 C -0.11 -0.72 9.68 -39.63 -0.38 -1.11 16 20 C -0.09 -0.53 9.54 -39.18 -0.37 -0.91 16 21 C -0.12 -1.03 5.87 -104.97 -0.62 -1.65 16 22 C 0.57 5.88 7.92 -12.33 -0.10 5.79 16 23 O -0.52 -7.63 16.75 -12.84 -0.22 -7.84 16 24 N -0.59 -4.00 6.90 30.53 0.21 -3.79 16 25 O -0.31 -2.19 14.70 -29.62 -0.44 -2.62 16 26 C -0.06 -0.48 9.60 -39.18 -0.38 -0.85 16 27 C -0.10 -0.85 9.68 -39.64 -0.38 -1.24 16 28 C -0.14 -3.17 9.34 -38.44 -0.36 -3.53 16 29 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 30 H 0.10 2.33 4.72 -52.49 -0.25 2.09 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.10 1.42 6.38 -52.48 -0.33 1.08 16 33 H 0.40 4.69 6.48 -40.82 -0.26 4.43 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.31 6.41 -52.49 -0.34 -0.02 16 38 H 0.41 1.01 6.86 -40.82 -0.28 0.73 16 39 H 0.39 0.09 9.28 45.56 0.42 0.51 16 40 H 0.14 1.23 7.65 -52.49 -0.40 0.83 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 2.76 7.64 -52.49 -0.40 2.35 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -34.94 364.53 -8.07 -43.01 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.54 Total: 7.38 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -5.93 Total: -15.84 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.64 Total: -33.90 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.56 Total: -22.01 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.17 Total: 15.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.94 -8.07 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798130215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.293 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds