Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00185 * 2 1 4 4 H 1.48498 * 109.47019 * 275.41240 * 3 2 1 5 5 H 1.48493 * 109.47000 * 35.41215 * 3 2 1 6 6 H 1.48500 * 109.47040 * 155.41309 * 3 2 1 7 7 C 1.39939 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99809 * 341.73670 * 7 2 1 9 9 C 1.41429 * 119.99997 * 161.73141 * 7 2 1 10 10 C 1.40787 * 120.17898 * 330.17841 * 9 7 2 11 11 C 1.37712 * 120.03950 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41453 * 359.97438 * 11 10 9 13 13 C 1.39879 * 120.35589 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02230 * 180.02562 * 13 12 11 15 15 O 1.21549 * 120.00033 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00272 * 0.02562 * 14 13 12 17 17 C 1.46504 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46748 * 180.02562 * 17 16 14 19 19 C 1.38366 * 119.84776 * 269.72462 * 18 17 16 20 20 C 1.37964 * 120.14148 * 179.72925 * 19 18 17 21 21 C 1.39573 * 119.85008 * 0.54376 * 20 19 18 22 22 C 1.47842 * 120.14312 * 179.70823 * 21 20 19 23 23 O 1.21562 * 120.00161 * 180.02562 * 22 21 20 24 24 N 1.34773 * 120.00161 * 0.02562 * 22 21 20 25 25 O 1.41601 * 120.00475 * 180.02562 * 24 22 21 26 26 C 1.39576 * 119.71365 * 359.72871 * 21 20 19 27 27 C 1.37961 * 119.85402 * 0.02562 * 26 21 20 28 28 C 1.39033 * 119.95088 * 0.02670 * 13 12 11 29 29 H 0.97011 * 119.99600 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.98166 * 0.02819 * 10 9 7 31 31 H 1.08002 * 119.79407 * 180.02562 * 11 10 9 32 32 H 1.08006 * 119.82258 * 179.97438 * 12 11 10 33 33 H 0.96998 * 120.00109 * 359.97438 * 16 14 13 34 34 H 1.09004 * 109.46922 * 300.00033 * 17 16 14 35 35 H 1.08997 * 109.47180 * 60.00162 * 17 16 14 36 36 H 1.07998 * 119.93115 * 0.02562 * 19 18 17 37 37 H 1.07994 * 120.07446 * 180.25100 * 20 19 18 38 38 H 0.97005 * 119.99945 * 359.97438 * 24 22 21 39 39 H 0.96693 * 114.00677 * 180.02562 * 25 24 22 40 40 H 1.08002 * 120.07446 * 179.97438 * 26 21 20 41 41 H 1.08001 * 119.92593 * 179.97438 * 27 26 21 42 42 H 1.07996 * 120.20059 * 180.25241 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5017 2.6169 0.8112 6 1 3.5923 1.4098 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3687 -1.2430 -0.3834 10 6 3.8624 -0.3111 -1.3162 11 6 5.1878 -0.3443 -1.6884 12 6 6.0430 -1.2898 -1.1505 13 6 5.5708 -2.2230 -0.2216 14 6 6.4914 -3.2300 0.3490 15 8 6.0806 -4.0410 1.1557 16 7 7.7860 -3.2485 -0.0256 17 6 8.6978 -4.2464 0.5393 18 6 10.0758 -4.0519 -0.0388 19 6 10.4382 -4.7201 -1.1949 20 6 11.6963 -4.5421 -1.7325 21 6 12.6080 -3.6946 -1.1011 22 6 13.9601 -3.5042 -1.6680 23 8 14.7523 -2.7659 -1.1158 24 7 14.3145 -4.1492 -2.7971 25 8 15.6096 -3.9673 -3.3398 26 6 12.2379 -3.0280 0.0680 27 6 10.9750 -3.2108 0.5923 28 6 4.2354 -2.2031 0.1648 29 1 -0.4850 0.8402 0.0004 30 1 3.2013 0.4302 -1.7400 31 1 5.5624 0.3727 -2.4039 32 1 7.0807 -1.3074 -1.4495 33 1 8.1138 -2.6015 -0.6697 34 1 8.7386 -4.1295 1.6223 35 1 8.3387 -5.2461 0.2951 36 1 9.7332 -5.3786 -1.6802 37 1 11.9766 -5.0611 -2.6371 38 1 13.6824 -4.7387 -3.2376 39 1 15.7709 -4.4702 -4.1498 40 1 12.9389 -2.3712 0.5615 41 1 10.6875 -2.6959 1.4971 42 1 3.8675 -2.9191 0.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798130215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = -49.021040 kcal Electronic energy + Delta-G solvation = -26909.418497 eV Core-core repulsion = 22819.973258 eV Total energy + Delta-G solvation = -4089.445240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38013 -40.91654 -39.61957 -38.95411 -37.42694 -36.06183 -35.54450 -33.73288 -32.73668 -32.04864 -31.79213 -31.38366 -27.92333 -26.91413 -24.73367 -23.70878 -23.52235 -22.44160 -21.63746 -21.57800 -20.42508 -19.71131 -18.47602 -18.15040 -17.38208 -17.29193 -16.88449 -16.47062 -16.39204 -16.29711 -16.06690 -15.63094 -15.45338 -15.27266 -14.90326 -14.61476 -14.55866 -14.40108 -14.20077 -13.96667 -13.88965 -13.62865 -13.41982 -13.30912 -12.83463 -12.68860 -12.63539 -12.30072 -12.09385 -11.76234 -11.55493 -11.35348 -11.22050 -10.90785 -10.27041 -10.20414 -10.02261 -9.90428 -9.61463 -9.54100 -8.90836 -6.54319 -0.38589 0.19413 0.34233 0.75451 0.98102 1.26109 1.42277 1.48910 1.60268 1.96520 2.12927 2.27598 2.66485 2.83674 3.32504 3.46856 3.62087 3.74286 3.90922 3.93909 4.19269 4.27104 4.28073 4.31963 4.42770 4.57018 4.60088 4.68113 4.78489 4.90122 4.93489 5.01021 5.15113 5.17497 5.24292 5.36405 5.43691 5.49181 5.66087 5.73110 5.77767 5.86072 5.95760 6.11754 6.31304 6.39020 6.56527 6.67059 6.75385 7.23169 7.23651 8.18064 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.001929 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.080541 B =14511.567882 C =15120.364614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.045 3.955 3 Si 0.967 3.033 4 H -0.247 1.247 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.064 3.936 10 C -0.225 4.225 11 C -0.084 4.084 12 C -0.181 4.181 13 C -0.113 4.113 14 C 0.565 3.435 15 O -0.583 6.583 16 N -0.706 5.706 17 C 0.156 3.844 18 C -0.074 4.074 19 C -0.101 4.101 20 C -0.073 4.073 21 C -0.129 4.129 22 C 0.567 3.433 23 O -0.574 6.574 24 N -0.576 5.576 25 O -0.338 6.338 26 C -0.068 4.068 27 C -0.105 4.105 28 C -0.166 4.166 29 H 0.295 0.705 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.430 0.570 39 H 0.415 0.585 40 H 0.131 0.869 41 H 0.142 0.858 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.580 -7.505 -9.432 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.170 4.170 3 Si 0.789 3.211 4 H -0.172 1.172 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.062 3.938 10 C -0.244 4.244 11 C -0.102 4.102 12 C -0.200 4.200 13 C -0.116 4.116 14 C 0.354 3.646 15 O -0.464 6.464 16 N -0.359 5.359 17 C 0.034 3.966 18 C -0.075 4.075 19 C -0.119 4.119 20 C -0.092 4.092 21 C -0.133 4.133 22 C 0.356 3.644 23 O -0.453 6.453 24 N -0.273 5.273 25 O -0.238 6.238 26 C -0.087 4.087 27 C -0.123 4.123 28 C -0.186 4.186 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.252 0.748 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.275 0.725 39 H 0.265 0.735 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 26.651 -7.137 -7.974 28.719 hybrid contribution -0.528 0.066 -0.624 0.820 sum 26.122 -7.070 -8.598 28.395 Atomic orbital electron populations 1.69729 1.09300 1.31589 1.36861 1.26894 0.95420 1.04358 0.90293 0.85472 0.79590 0.76033 0.79996 1.17199 1.20541 1.17489 1.19457 0.94562 0.95702 1.42048 0.93161 1.17782 0.92520 0.92399 0.91107 1.21388 0.97447 1.03461 1.02124 1.21040 0.92317 0.98082 0.98715 1.20996 1.00224 0.97740 1.01056 1.19692 0.93356 0.97945 1.00582 1.18524 0.82577 0.83182 0.80300 1.90705 1.77689 1.41985 1.36042 1.45763 1.07669 1.35828 1.46668 1.20307 0.85134 0.92818 0.98356 1.20052 0.94391 0.97058 0.96002 1.21334 0.96755 0.99233 0.94612 1.21565 0.92360 0.95561 0.99669 1.19576 0.91997 1.03192 0.98527 1.18583 0.87528 0.79283 0.78982 1.90794 1.53702 1.39480 1.61352 1.46499 1.06000 1.49122 1.25706 1.89250 1.13715 1.72535 1.48340 1.21271 0.96354 0.97156 0.93943 1.21200 0.92463 0.97942 1.00737 1.21200 0.92878 1.02281 1.02266 0.89487 0.87734 0.83654 0.83376 0.74755 0.90763 0.89950 0.82668 0.81621 0.72519 0.73484 0.85138 0.84041 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.54 13.93 21.82 0.30 -46.24 16 2 C 0.04 2.39 5.40 85.26 0.46 2.85 16 3 Si 0.97 41.35 24.52 68.60 1.68 43.03 16 4 H -0.25 -9.60 6.71 99.48 0.67 -8.94 16 5 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.25 -10.90 6.86 99.48 0.68 -10.22 16 7 C -0.49 -27.75 9.57 23.47 0.22 -27.53 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 C 0.06 3.26 5.10 -21.32 -0.11 3.16 16 10 C -0.22 -9.84 7.17 22.77 0.16 -9.68 16 11 C -0.08 -2.91 10.01 22.18 0.22 -2.69 16 12 C -0.18 -5.80 9.55 22.70 0.22 -5.58 16 13 C -0.11 -4.40 5.87 -20.13 -0.12 -4.52 16 14 C 0.56 19.72 7.77 86.80 0.67 20.39 16 15 O -0.58 -24.86 16.33 -3.87 -0.06 -24.92 16 16 N -0.71 -16.24 5.50 -469.65 -2.58 -18.82 16 17 C 0.16 2.86 5.79 85.63 0.50 3.36 16 18 C -0.07 -0.98 5.25 -19.81 -0.10 -1.08 16 19 C -0.10 -0.91 9.68 22.24 0.22 -0.69 16 20 C -0.07 -0.53 9.54 22.53 0.21 -0.31 16 21 C -0.13 -1.79 5.87 -20.09 -0.12 -1.91 16 22 C 0.57 10.59 7.92 86.79 0.69 11.27 16 23 O -0.57 -16.88 16.75 13.44 0.23 -16.65 16 24 N -0.58 -6.00 6.90 -175.60 -1.21 -7.21 16 25 O -0.34 -3.88 14.70 -21.43 -0.31 -4.19 16 26 C -0.07 -1.07 9.60 22.53 0.22 -0.86 16 27 C -0.10 -1.46 9.68 22.23 0.22 -1.25 16 28 C -0.17 -8.01 9.34 23.01 0.21 -7.79 16 29 H 0.29 14.41 8.30 -92.70 -0.77 13.64 16 30 H 0.10 4.52 4.72 -2.91 -0.01 4.51 16 31 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.15 3.24 6.38 -2.91 -0.02 3.23 16 33 H 0.41 7.43 6.48 -92.71 -0.60 6.83 16 34 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 35 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 36 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.17 -0.20 6.41 -2.91 -0.02 -0.22 16 38 H 0.43 0.22 6.86 -92.70 -0.64 -0.42 16 39 H 0.42 -1.07 9.28 -74.06 -0.69 -1.76 16 40 H 0.13 2.28 7.65 -2.91 -0.02 2.26 16 41 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.09 4.69 7.64 -2.91 -0.02 4.67 16 Total: -1.00 -83.40 364.53 0.95 -82.46 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.86 Total: 15.41 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 3.77 Total: -22.86 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -3.49 Total: -72.27 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.15 Total: -45.77 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.68 Total: 43.03 kcal Total: -83.40 0.95 -82.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798130215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.436 kcal (2) G-P(sol) polarization free energy of solvation -83.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds