Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86801 * 120.00112 * 2 1 4 4 H 1.48505 * 109.47068 * 269.99688 * 3 2 1 5 5 H 1.48500 * 109.46930 * 29.99284 * 3 2 1 6 6 H 1.48498 * 109.47377 * 149.99699 * 3 2 1 7 7 C 1.40244 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00228 * 197.86989 * 7 2 1 9 9 C 1.41090 * 119.99958 * 17.87509 * 7 2 1 10 10 C 1.40905 * 120.09803 * 204.64295 * 9 7 2 11 11 C 1.36302 * 119.89613 * 180.02562 * 10 9 7 12 12 C 1.40066 * 120.10086 * 359.97438 * 11 10 9 13 13 C 1.47516 * 119.89627 * 179.97438 * 12 11 10 14 14 O 1.21500 * 120.00139 * 0.02562 * 13 12 11 15 15 O 1.34778 * 119.99528 * 179.97438 * 13 12 11 16 16 C 1.45200 * 116.99761 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47134 * 180.02562 * 16 15 13 18 18 C 1.38235 * 120.41225 * 359.97438 * 17 16 15 19 19 C 1.39376 * 118.34946 * 180.02562 * 18 17 16 20 20 O 1.35520 * 120.50978 * 180.02562 * 19 18 17 21 21 N 1.32820 * 118.97909 * 0.27203 * 19 18 17 22 22 C 1.31774 * 120.71361 * 359.44353 * 21 19 18 23 23 C 1.50702 * 119.08941 * 180.29142 * 22 21 19 24 24 C 1.53004 * 117.50034 * 9.01825 * 23 22 21 25 25 C 1.53003 * 117.49702 * 300.35967 * 23 22 21 26 26 N 1.31777 * 121.81642 * 0.57522 * 22 21 19 27 27 C 1.40066 * 120.20162 * 0.25076 * 12 11 10 28 28 C 1.36299 * 120.09923 * 359.48698 * 27 12 11 29 29 H 0.96996 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.05240 * 359.97438 * 10 9 7 31 31 H 1.08003 * 119.94600 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.46998 * 59.99568 * 16 15 13 33 33 H 1.09001 * 109.46744 * 300.00298 * 16 15 13 34 34 H 1.07996 * 120.82320 * 359.97438 * 18 17 16 35 35 H 0.96701 * 114.00066 * 90.00140 * 20 19 18 36 36 H 1.08996 * 115.54953 * 154.69354 * 23 22 21 37 37 H 1.08998 * 117.50023 * 0.02562 * 24 23 22 38 38 H 1.08996 * 117.49563 * 145.02182 * 24 23 22 39 39 H 1.08997 * 117.50207 * 214.97871 * 25 23 22 40 40 H 1.09002 * 117.49820 * 359.97438 * 25 23 22 41 41 H 1.07994 * 119.94938 * 179.74650 * 27 12 11 42 42 H 1.07997 * 120.05119 * 180.24843 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4377 2.6527 0.6999 6 1 3.5379 1.4402 0.7001 7 6 2.0075 -1.2145 0.0005 8 1 3.0484 -1.2370 0.2875 9 6 1.3532 -2.4071 -0.3740 10 6 1.8268 -3.6495 0.0926 11 6 1.1918 -4.7990 -0.2722 12 6 0.0698 -4.7466 -1.1091 13 6 -0.6136 -5.9936 -1.5015 14 8 -0.2034 -7.0639 -1.0986 15 8 -1.6937 -5.9455 -2.3063 16 6 -2.3159 -7.2113 -2.6509 17 6 -3.4984 -6.9613 -3.5509 18 6 -3.8368 -5.6728 -3.9200 19 6 -4.9390 -5.4910 -4.7535 20 8 -5.3093 -4.2469 -5.1429 21 7 -5.6237 -6.5554 -5.1563 22 6 -5.2636 -7.7674 -4.7850 23 6 -6.0629 -8.9498 -5.2689 24 6 -7.1267 -8.6934 -6.3383 25 6 -7.5466 -8.9988 -4.8983 26 7 -4.2270 -7.9736 -3.9979 27 6 -0.4017 -3.5143 -1.5791 28 6 0.2238 -2.3593 -1.2151 29 1 -0.4850 0.8400 -0.0004 30 1 2.6920 -3.6908 0.7375 31 1 1.5543 -5.7518 0.0846 32 1 -2.6500 -7.7114 -1.7418 33 1 -1.5931 -7.8425 -3.1680 34 1 -3.2618 -4.8280 -3.5706 35 1 -4.8923 -3.9512 -5.9638 36 1 -5.5235 -9.8959 -5.3122 37 1 -7.2482 -7.6697 -6.6922 38 1 -7.2873 -9.4711 -7.0849 39 1 -7.9833 -9.9772 -4.6982 40 1 -7.9443 -8.1761 -4.3041 41 1 -1.2646 -3.4789 -2.2274 42 1 -0.1428 -1.4092 -1.5747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837601768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -35.518804 kcal Electronic energy + Delta-G solvation = -27361.355714 eV Core-core repulsion = 23272.495975 eV Total energy + Delta-G solvation = -4088.859739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51622 -39.73404 -38.14304 -37.63017 -37.12257 -35.84720 -34.03218 -33.61938 -31.70681 -30.45665 -29.58948 -28.07953 -26.13605 -25.41286 -23.33093 -22.62615 -22.47327 -21.09763 -20.91840 -20.08633 -19.08178 -17.93368 -17.64074 -16.79825 -16.63949 -16.23136 -16.16913 -15.69306 -15.49441 -15.41725 -14.71797 -14.37778 -14.15748 -13.84585 -13.45555 -13.12596 -12.99885 -12.61182 -12.57320 -12.23316 -12.16058 -11.86255 -11.78485 -11.51378 -11.37843 -11.16589 -11.04630 -10.93164 -10.84121 -10.74973 -10.71078 -10.20846 -10.20385 -9.70474 -9.58570 -9.54974 -9.45441 -9.35773 -7.84131 -7.72428 -7.17087 -4.75409 0.62143 0.70057 1.95261 2.77226 2.81545 2.88394 2.91442 2.95626 3.01203 3.18140 3.53202 3.64803 3.69342 3.86685 4.06635 4.38472 4.54424 4.66294 4.70663 4.76025 4.91331 5.19829 5.26487 5.33676 5.35680 5.42889 5.43888 5.55641 5.78148 5.87015 5.91011 5.99120 6.11462 6.17991 6.66726 6.71865 6.76108 6.86768 6.90384 7.00941 7.12864 7.33208 7.58202 7.69771 7.75069 7.83870 7.92772 8.27345 8.48715 8.58580 8.61447 9.73927 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002214 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.639328 B =12644.156865 C =14074.704967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.431 4.431 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.238 4.238 11 C -0.016 4.016 12 C -0.276 4.276 13 C 0.519 3.481 14 O -0.547 6.547 15 O -0.360 6.360 16 C 0.118 3.882 17 C 0.196 3.804 18 C -0.222 4.222 19 C 0.365 3.635 20 O -0.473 6.473 21 N -0.541 5.541 22 C 0.375 3.625 23 C -0.102 4.102 24 C -0.153 4.153 25 C -0.155 4.155 26 N -0.517 5.517 27 C -0.042 4.042 28 C -0.184 4.184 29 H 0.290 0.710 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.167 0.833 35 H 0.409 0.591 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -7.865 -10.657 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.458 4.458 8 H 0.106 0.894 9 C 0.127 3.873 10 C -0.258 4.258 11 C -0.035 4.035 12 C -0.278 4.278 13 C 0.371 3.629 14 O -0.441 6.441 15 O -0.278 6.278 16 C 0.043 3.957 17 C 0.051 3.949 18 C -0.245 4.245 19 C 0.178 3.822 20 O -0.280 6.280 21 N -0.266 5.266 22 C 0.108 3.892 23 C -0.122 4.122 24 C -0.191 4.191 25 C -0.193 4.193 26 N -0.234 5.234 27 C -0.061 4.061 28 C -0.204 4.204 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.185 0.815 35 H 0.268 0.732 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.134 -8.678 -10.328 17.491 hybrid contribution 0.979 1.509 -0.004 1.799 sum -10.155 -7.169 -10.332 16.164 Atomic orbital electron populations 1.69733 1.08009 1.30479 1.30128 1.26178 0.94875 1.02159 0.91871 0.86151 0.80568 0.79489 0.79804 1.18770 1.19865 1.18148 1.19962 0.98518 0.91140 1.36175 0.89373 1.17866 0.90313 0.92222 0.86883 1.20687 1.04698 0.92402 1.07977 1.20350 0.92415 0.97471 0.93264 1.18142 1.04581 0.88948 1.16155 1.21582 0.76509 0.90439 0.74324 1.90722 1.65840 1.32064 1.55444 1.86508 1.43903 1.33171 1.64173 1.21196 0.91118 0.85495 0.97894 1.21126 0.93327 0.88450 0.91950 1.22870 0.98638 1.00581 1.02404 1.19375 0.87361 0.84738 0.90728 1.84730 1.71509 1.25218 1.46578 1.67579 1.32571 0.99258 1.27232 1.21775 0.88937 0.89871 0.88636 1.20649 0.90394 0.95148 1.06000 1.23044 1.00139 1.04103 0.91764 1.23013 0.93770 1.03612 0.98927 1.67679 1.07508 1.35797 1.12413 1.20606 0.97066 0.91922 0.96548 1.21014 1.00022 0.97083 1.02237 0.89887 0.87989 0.87857 0.88424 0.88446 0.81531 0.73159 0.84962 0.87196 0.88062 0.87757 0.88505 0.88168 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.56 10.95 55.56 0.61 -16.95 16 2 C 0.07 1.61 5.14 -17.31 -0.09 1.52 16 3 Si 0.92 16.49 29.60 -169.99 -5.03 11.46 16 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 7 C -0.43 -10.23 9.04 -37.75 -0.34 -10.57 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.19 5.58 -106.80 -0.60 2.60 16 10 C -0.24 -5.50 9.73 -39.27 -0.38 -5.88 16 11 C -0.02 -0.37 9.52 -39.59 -0.38 -0.74 16 12 C -0.28 -6.17 5.89 -104.74 -0.62 -6.79 16 13 C 0.52 10.82 7.89 34.51 0.27 11.09 16 14 O -0.55 -12.18 16.11 -19.26 -0.31 -12.49 16 15 O -0.36 -6.38 7.99 -40.71 -0.33 -6.71 16 16 C 0.12 1.77 6.04 36.00 0.22 1.99 16 17 C 0.20 2.79 6.82 -82.31 -0.56 2.23 16 18 C -0.22 -3.02 9.44 -39.16 -0.37 -3.39 16 19 C 0.37 4.71 7.83 -16.70 -0.13 4.58 16 20 O -0.47 -5.12 13.58 -18.25 -0.25 -5.37 16 21 N -0.54 -7.09 9.38 -10.78 -0.10 -7.19 16 22 C 0.38 4.82 7.31 -157.23 -1.15 3.68 16 23 C -0.10 -0.98 6.23 -91.77 -0.57 -1.56 16 24 C -0.15 -1.19 10.01 -26.69 -0.27 -1.46 16 25 C -0.15 -1.25 10.24 -26.69 -0.27 -1.52 16 26 N -0.52 -7.22 10.27 -7.05 -0.07 -7.30 16 27 C -0.04 -0.94 9.55 -39.59 -0.38 -1.32 16 28 C -0.18 -4.40 8.63 -39.27 -0.34 -4.73 16 29 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 30 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.10 2.20 7.63 -52.48 -0.40 1.80 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.17 2.26 7.09 -52.49 -0.37 1.89 16 35 H 0.41 2.26 9.06 45.56 0.41 2.67 16 36 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.11 0.98 7.54 -51.93 -0.39 0.59 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.10 1.98 7.59 -52.49 -0.40 1.58 16 42 H 0.12 2.93 6.15 -52.49 -0.32 2.61 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -28.71 372.25 -9.80 -38.52 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -3.98 Total: 10.70 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -5.95 Total: -10.28 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.43 Total: -31.44 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.88 Total: -24.57 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.71 -9.80 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837601768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.998 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds