Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 C 1.50701 * 109.46710 * 240.00456 * 2 1 3 5 5 H 1.07998 * 120.00230 * 239.99322 * 4 2 1 6 6 C 1.37885 * 119.99977 * 59.99787 * 4 2 1 7 7 N 1.31514 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99770 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46624 * 90.00305 * 8 6 4 10 10 H 1.48500 * 109.46935 * 209.99993 * 8 6 4 11 11 H 1.48496 * 109.47489 * 330.00601 * 8 6 4 12 12 C 1.52996 * 109.47350 * 120.00584 * 2 1 3 13 13 N 1.46500 * 109.47079 * 299.99658 * 12 2 1 14 14 C 1.34773 * 119.99749 * 180.02562 * 13 12 2 15 15 O 1.21281 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99780 * 179.97438 * 14 13 12 17 17 O 1.42904 * 109.47261 * 180.02562 * 16 14 13 18 18 C 1.35895 * 117.00202 * 179.97438 * 17 16 14 19 19 C 1.38763 * 120.04251 * 179.97438 * 18 17 16 20 20 C 1.38142 * 119.99431 * 180.02562 * 19 18 17 21 21 C 1.38251 * 120.07778 * 0.26239 * 20 19 18 22 22 N 1.48019 * 119.95459 * 179.72171 * 21 20 19 23 23 O 1.21796 * 120.00027 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99663 * 179.97438 * 22 21 20 25 25 C 1.38473 * 120.08702 * 359.48449 * 21 20 19 26 26 F 1.35095 * 120.00135 * 180.23634 * 25 21 20 27 27 C 1.38388 * 120.00405 * 0.51149 * 25 21 20 28 28 H 1.09004 * 109.46520 * 299.99258 * 1 2 3 29 29 H 1.09000 * 109.47460 * 59.99198 * 1 2 3 30 30 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47322 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47599 * 300.00717 * 3 2 1 33 33 H 1.09000 * 109.47048 * 60.00473 * 3 2 1 34 34 H 0.96992 * 119.99922 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.47064 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47198 * 59.99745 * 12 2 1 37 37 H 0.96994 * 120.00076 * 0.02562 * 13 12 2 38 38 H 1.08995 * 109.46913 * 59.99851 * 16 14 13 39 39 H 1.08999 * 109.47186 * 300.00025 * 16 14 13 40 40 H 1.07999 * 120.00841 * 0.02562 * 19 18 17 41 41 H 1.08002 * 119.95749 * 179.97438 * 20 19 18 42 42 H 1.07994 * 120.04338 * 179.77075 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6990 -0.2392 -2.4828 7 7 0.9433 0.8304 -2.6034 8 14 2.3222 -1.1193 -4.0082 9 1 1.3443 -2.1613 -4.4125 10 1 2.4869 -0.1399 -5.1122 11 1 3.6305 -1.7565 -3.7123 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8779 -0.4911 3.6694 15 8 2.5759 -1.4767 3.7805 16 6 1.3761 0.2196 4.8999 17 8 1.8534 -0.4536 6.0667 18 6 1.4893 0.0634 7.2695 19 6 1.9170 -0.5405 8.4434 20 6 1.5459 -0.0144 9.6656 21 6 0.7440 1.1104 9.7211 22 7 0.3429 1.6681 11.0322 23 8 0.7189 1.1359 12.0612 24 8 -0.3632 2.6594 11.0820 25 6 0.3196 1.7188 8.5518 26 9 -0.4600 2.8206 8.6081 27 6 0.6893 1.1948 7.3255 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7086 1.1616 -3.4843 35 1 3.1301 -0.7217 1.2488 36 1 1.6767 -1.7490 1.2491 37 1 0.9939 0.7576 2.3565 38 1 0.2862 0.2196 4.9003 39 1 1.7395 1.2472 4.8996 40 1 2.5400 -1.4217 8.4015 41 1 1.8788 -0.4852 10.5789 42 1 0.3557 1.6666 6.4132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837888464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -94.633759 kcal Electronic energy + Delta-G solvation = -28459.029387 eV Core-core repulsion = 23936.837007 eV Total energy + Delta-G solvation = -4522.192380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.84063 -42.43738 -41.10828 -39.52001 -38.01797 -36.83719 -36.49573 -33.57174 -31.95653 -31.84427 -31.13915 -29.12563 -26.50932 -25.88632 -25.67710 -24.91936 -23.81910 -22.91095 -20.67841 -19.92997 -19.28442 -19.09601 -18.93565 -17.96310 -17.78584 -17.19945 -16.99966 -16.56812 -16.27687 -15.94895 -15.42308 -15.19126 -14.85561 -14.81283 -14.50777 -14.33808 -13.53809 -13.41789 -13.09857 -12.95062 -12.79973 -12.36626 -12.33302 -11.88537 -11.83839 -11.52146 -11.49489 -11.43351 -11.33231 -10.98272 -10.80172 -10.54245 -10.32396 -10.00579 -9.89852 -9.80198 -9.46836 -9.45311 -8.93982 -8.72587 -8.48307 -6.13958 -4.24481 -0.62885 0.11303 0.85364 0.95893 1.99448 2.49018 2.58036 3.00778 3.20626 3.28261 3.31225 3.44373 3.57828 3.87491 3.95149 4.29598 4.38663 4.49744 4.56801 4.65783 4.70435 4.94072 4.95427 5.13272 5.19345 5.45258 5.97422 6.00742 6.12551 6.30104 6.36016 6.53084 6.64517 6.73088 6.76500 6.84896 7.18769 7.29383 7.40098 7.56397 7.68991 7.86358 7.98788 8.21717 8.31696 8.75919 9.42101 10.87512 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.001818 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.593471 B =15396.834620 C =16079.057960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.708 5.708 14 C 0.507 3.493 15 O -0.526 6.526 16 C 0.028 3.972 17 O -0.264 6.264 18 C 0.221 3.779 19 C -0.158 4.158 20 C 0.012 3.988 21 C -0.131 4.131 22 N 0.038 4.962 23 O -0.162 6.162 24 O -0.156 6.156 25 C 0.219 3.781 26 F -0.098 7.098 27 C -0.258 4.258 28 H 0.005 0.995 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.005 0.995 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 1.994 20.195 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.361 5.361 14 C 0.290 3.710 15 O -0.402 6.402 16 C -0.050 4.050 17 O -0.173 6.173 18 C 0.171 3.829 19 C -0.177 4.177 20 C -0.007 4.007 21 C -0.216 4.216 22 N 0.556 4.444 23 O -0.376 6.376 24 O -0.372 6.372 25 C 0.197 3.803 26 F -0.075 7.075 27 C -0.278 4.278 28 H 0.024 0.976 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.236 0.764 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.670 0.996 19.409 19.446 hybrid contribution -0.408 0.559 -0.697 0.982 sum -1.078 1.555 18.711 18.807 Atomic orbital electron populations 1.21851 0.97666 0.99300 1.00153 1.18380 0.92868 0.92817 0.90434 1.21849 0.98707 0.98254 1.00154 1.20947 1.31739 1.12215 0.89750 0.92351 1.24885 0.94797 0.94888 0.98938 1.69785 1.36536 1.22620 1.23411 0.86549 0.79350 0.79392 0.82470 1.20660 1.21211 1.19870 1.21843 0.98451 0.95923 0.82692 1.46194 1.52544 1.31973 1.05358 1.19706 0.81916 0.85287 0.84112 1.90756 1.37293 1.25776 1.86407 1.22912 1.01078 0.97492 0.83537 1.86295 1.68439 1.51449 1.11149 1.19149 0.88071 0.88913 0.86766 1.20561 1.05499 1.03851 0.87772 1.20775 0.89857 0.90067 1.00029 1.21106 1.13963 1.04013 0.82542 1.43233 0.98897 1.00009 1.02233 1.94538 1.58236 1.62187 1.22615 1.94617 1.33824 1.14747 1.93983 1.16947 0.88594 0.83175 0.91539 1.91695 1.70249 1.48579 1.97009 1.21330 1.07500 1.00980 0.97948 0.97581 0.89448 0.95310 0.95305 0.89445 0.97581 0.92886 0.92262 0.92272 0.76428 0.88042 0.88047 0.81649 0.81174 0.81590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.08 37.16 0.30 -2.41 16 2 C 0.06 1.18 0.50 -155.66 -0.08 1.10 16 3 C -0.13 -2.71 8.08 37.16 0.30 -2.41 16 4 C -0.51 -12.51 8.01 -34.44 -0.28 -12.78 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.66 5.15 -17.82 -0.09 1.57 16 7 N -0.89 -22.43 9.35 55.43 0.52 -21.91 16 8 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.13 2.51 4.50 -4.04 -0.02 2.49 16 13 N -0.71 -10.37 4.96 -60.29 -0.30 -10.67 16 14 C 0.51 7.13 7.91 -10.99 -0.09 7.05 16 15 O -0.53 -9.78 16.50 -14.35 -0.24 -10.01 16 16 C 0.03 0.25 5.22 36.01 0.19 0.43 16 17 O -0.26 -2.63 9.67 -39.32 -0.38 -3.01 16 18 C 0.22 1.69 6.69 -39.23 -0.26 1.43 16 19 C -0.16 -0.99 9.99 -39.42 -0.39 -1.39 16 20 C 0.01 0.08 9.55 -39.61 -0.38 -0.30 16 21 C -0.13 -1.19 6.86 -79.85 -0.55 -1.73 16 22 N 0.04 0.44 4.45 34.01 0.15 0.59 16 23 O -0.16 -1.87 18.44 -29.46 -0.54 -2.42 16 24 O -0.16 -2.03 17.42 -29.46 -0.51 -2.55 16 25 C 0.22 1.90 7.25 -39.44 -0.29 1.61 16 26 F -0.10 -0.98 15.47 2.25 0.03 -0.94 16 27 C -0.26 -1.79 9.02 -39.36 -0.35 -2.14 16 28 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 29 H 0.09 2.03 6.07 -51.93 -0.32 1.71 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 2.03 6.07 -51.93 -0.32 1.71 16 33 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.40 4.97 6.16 -40.82 -0.25 4.72 16 38 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 39 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.17 0.75 7.61 -52.49 -0.40 0.35 16 42 H 0.17 0.79 6.30 -52.49 -0.33 0.46 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -29.84 361.84 -7.60 -37.44 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.77 Total: 0.67 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.99 Total: -7.49 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.37 Total: -31.99 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.67 Total: -17.99 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.03 Total: -0.94 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.84 -7.60 -37.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.197 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds