Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 C 1.50701 * 109.46710 * 240.00456 * 2 1 3 5 5 H 1.07998 * 120.00230 * 239.99322 * 4 2 1 6 6 C 1.37885 * 119.99977 * 59.99787 * 4 2 1 7 7 N 1.31514 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99770 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46624 * 90.00305 * 8 6 4 10 10 H 1.48500 * 109.46935 * 209.99993 * 8 6 4 11 11 H 1.48496 * 109.47489 * 330.00601 * 8 6 4 12 12 C 1.52996 * 109.47350 * 120.00584 * 2 1 3 13 13 N 1.46500 * 109.47079 * 299.99658 * 12 2 1 14 14 C 1.34773 * 119.99749 * 180.02562 * 13 12 2 15 15 O 1.21281 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99780 * 179.97438 * 14 13 12 17 17 O 1.42904 * 109.47261 * 180.02562 * 16 14 13 18 18 C 1.35895 * 117.00202 * 179.97438 * 17 16 14 19 19 C 1.38763 * 120.04251 * 179.97438 * 18 17 16 20 20 C 1.38142 * 119.99431 * 180.02562 * 19 18 17 21 21 C 1.38251 * 120.07778 * 0.26239 * 20 19 18 22 22 N 1.48019 * 119.95459 * 179.72171 * 21 20 19 23 23 O 1.21796 * 120.00027 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99663 * 179.97438 * 22 21 20 25 25 C 1.38473 * 120.08702 * 359.48449 * 21 20 19 26 26 F 1.35095 * 120.00135 * 180.23634 * 25 21 20 27 27 C 1.38388 * 120.00405 * 0.51149 * 25 21 20 28 28 H 1.09004 * 109.46520 * 299.99258 * 1 2 3 29 29 H 1.09000 * 109.47460 * 59.99198 * 1 2 3 30 30 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47322 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47599 * 300.00717 * 3 2 1 33 33 H 1.09000 * 109.47048 * 60.00473 * 3 2 1 34 34 H 0.96992 * 119.99922 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.47064 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47198 * 59.99745 * 12 2 1 37 37 H 0.96994 * 120.00076 * 0.02562 * 13 12 2 38 38 H 1.08995 * 109.46913 * 59.99851 * 16 14 13 39 39 H 1.08999 * 109.47186 * 300.00025 * 16 14 13 40 40 H 1.07999 * 120.00841 * 0.02562 * 19 18 17 41 41 H 1.08002 * 119.95749 * 179.97438 * 20 19 18 42 42 H 1.07994 * 120.04338 * 179.77075 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6990 -0.2392 -2.4828 7 7 0.9433 0.8304 -2.6034 8 14 2.3222 -1.1193 -4.0082 9 1 1.3443 -2.1613 -4.4125 10 1 2.4869 -0.1399 -5.1122 11 1 3.6305 -1.7565 -3.7123 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8779 -0.4911 3.6694 15 8 2.5759 -1.4767 3.7805 16 6 1.3761 0.2196 4.8999 17 8 1.8534 -0.4536 6.0667 18 6 1.4893 0.0634 7.2695 19 6 1.9170 -0.5405 8.4434 20 6 1.5459 -0.0144 9.6656 21 6 0.7440 1.1104 9.7211 22 7 0.3429 1.6681 11.0322 23 8 0.7189 1.1359 12.0612 24 8 -0.3632 2.6594 11.0820 25 6 0.3196 1.7188 8.5518 26 9 -0.4600 2.8206 8.6081 27 6 0.6893 1.1948 7.3255 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7086 1.1616 -3.4843 35 1 3.1301 -0.7217 1.2488 36 1 1.6767 -1.7490 1.2491 37 1 0.9939 0.7576 2.3565 38 1 0.2862 0.2196 4.9003 39 1 1.7395 1.2472 4.8996 40 1 2.5400 -1.4217 8.4015 41 1 1.8788 -0.4852 10.5789 42 1 0.3557 1.6666 6.4132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837888464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -111.073279 kcal Electronic energy + Delta-G solvation = -28459.742258 eV Core-core repulsion = 23936.837007 eV Total energy + Delta-G solvation = -4522.905252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.50742 -43.24348 -41.80373 -40.60876 -38.79468 -37.99647 -37.69281 -35.07469 -32.95043 -32.53690 -32.33309 -30.02251 -27.54405 -27.48299 -27.23016 -26.34171 -24.48279 -23.60413 -21.82316 -20.66237 -20.61551 -19.90917 -19.85944 -18.76054 -18.74937 -18.08728 -17.70043 -17.65804 -17.23394 -16.98500 -16.63575 -16.50199 -15.94727 -15.74164 -15.39033 -15.00382 -14.82914 -14.60173 -14.54532 -13.99138 -13.72220 -13.68926 -13.19213 -13.09545 -12.86729 -12.77588 -12.70189 -12.60802 -12.44553 -12.34304 -12.33592 -12.23764 -12.13874 -11.47733 -11.30524 -10.95359 -10.68966 -10.53976 -10.39987 -10.07701 -9.99937 -8.03061 -6.18026 -1.36951 -0.40327 0.10366 0.23729 1.25762 1.41680 1.45974 1.51316 1.52906 1.94353 2.38362 2.43965 2.56415 2.98917 3.21162 3.32041 3.43124 3.58092 3.93969 4.00712 4.04407 4.12297 4.36313 4.42688 4.43903 4.51618 4.72278 4.73350 4.91553 4.99962 5.07038 5.09459 5.19511 5.20907 5.32750 5.55377 5.68207 5.68981 5.76162 6.18000 6.22780 6.39510 6.43940 6.55847 6.86623 7.19809 7.49856 8.95345 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.001818 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.593471 B =15396.834620 C =16079.057960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.897 5.897 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.149 3.851 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.577 6.577 16 C 0.033 3.967 17 O -0.285 6.285 18 C 0.219 3.781 19 C -0.149 4.149 20 C 0.022 3.978 21 C -0.143 4.143 22 N 0.039 4.961 23 O -0.157 6.157 24 O -0.204 6.204 25 C 0.204 3.796 26 F -0.110 7.110 27 C -0.243 4.243 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.260 0.740 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.414 0.586 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 2.154 21.100 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.025 3.975 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.456 6.456 16 C -0.044 4.044 17 O -0.195 6.195 18 C 0.170 3.830 19 C -0.168 4.168 20 C 0.003 3.997 21 C -0.229 4.229 22 N 0.552 4.448 23 O -0.376 6.376 24 O -0.409 6.409 25 C 0.183 3.817 26 F -0.088 7.088 27 C -0.262 4.262 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.252 0.748 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.202 0.798 41 H 0.209 0.791 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.849 1.248 20.317 20.373 hybrid contribution -0.292 0.395 -0.973 1.090 sum -1.141 1.642 19.344 19.447 Atomic orbital electron populations 1.21692 0.96938 0.98770 1.00663 1.18376 0.93383 0.93118 0.90196 1.21690 0.97987 0.97719 1.00664 1.21277 1.31597 1.12116 0.91585 0.93761 1.25419 0.95262 0.95597 1.00887 1.69891 1.37009 1.23156 1.23551 0.85822 0.78660 0.78504 0.80180 1.20639 1.21029 1.20131 1.21300 0.97250 0.95179 0.83751 1.45932 1.52747 1.32179 1.04663 1.20564 0.80533 0.84556 0.85175 1.90740 1.39511 1.28199 1.87200 1.22967 1.03005 0.97767 0.80685 1.86258 1.69093 1.52285 1.11892 1.19236 0.88294 0.89163 0.86277 1.20802 1.04865 1.03992 0.87141 1.21010 0.88714 0.88940 1.01051 1.21356 1.15229 1.05100 0.81215 1.43568 0.98450 0.99713 1.03098 1.94502 1.57616 1.61735 1.23726 1.94615 1.35711 1.16146 1.94416 1.17159 0.89163 0.83265 0.92091 1.91666 1.70726 1.49280 1.97089 1.21497 1.06335 1.00297 0.98090 0.93787 0.92117 0.96308 0.96297 0.92115 0.93787 0.93090 0.94032 0.94019 0.74757 0.84346 0.84353 0.79837 0.79121 0.78994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 8.08 71.98 0.58 -4.30 16 2 C 0.05 2.08 0.50 -52.93 -0.03 2.06 16 3 C -0.12 -4.88 8.08 71.98 0.58 -4.30 16 4 C -0.53 -26.22 8.01 25.60 0.21 -26.01 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.42 5.15 84.66 0.44 1.86 16 7 N -0.90 -45.61 9.35 21.45 0.20 -45.41 16 8 Si 0.94 41.00 29.54 68.60 2.03 43.03 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.15 5.53 4.50 86.38 0.39 5.92 16 13 N -0.70 -18.71 4.96 -463.06 -2.30 -21.00 16 14 C 0.51 12.89 7.91 87.66 0.69 13.58 16 15 O -0.58 -20.84 16.50 16.00 0.26 -20.57 16 16 C 0.03 0.43 5.22 71.24 0.37 0.80 16 17 O -0.29 -4.62 9.67 -73.33 -0.71 -5.33 16 18 C 0.22 2.54 6.69 22.50 0.15 2.69 16 19 C -0.15 -1.38 9.99 22.37 0.22 -1.16 16 20 C 0.02 0.22 9.55 22.25 0.21 0.43 16 21 C -0.14 -2.36 6.86 36.43 0.25 -2.11 16 22 N 0.04 0.88 4.45 -46.32 -0.21 0.67 16 23 O -0.16 -3.53 18.44 18.89 0.35 -3.18 16 24 O -0.20 -5.42 17.42 18.89 0.33 -5.10 16 25 C 0.20 3.13 7.25 22.36 0.16 3.29 16 26 F -0.11 -2.09 15.47 44.97 0.70 -1.39 16 27 C -0.24 -2.46 9.02 22.41 0.20 -2.26 16 28 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 29 H 0.06 2.77 6.07 -2.39 -0.01 2.76 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 2.77 6.07 -2.39 -0.01 2.76 16 33 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 34 H 0.26 12.80 8.31 -92.71 -0.77 12.03 16 35 H 0.04 1.67 8.14 -2.38 -0.02 1.66 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 8.59 6.16 -92.71 -0.57 8.02 16 38 H 0.14 0.84 7.66 -2.39 -0.02 0.83 16 39 H 0.14 0.84 7.66 -2.39 -0.02 0.83 16 40 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.19 1.11 7.61 -2.91 -0.02 1.09 16 42 H 0.19 0.83 6.30 -2.91 -0.02 0.81 16 Total: -1.00 -67.81 361.84 5.60 -62.21 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 0.52 Total: 5.57 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.43 Total: -9.51 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -2.30 Total: -65.74 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: 0.23 Total: -34.17 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.70 Total: -1.39 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -67.81 5.60 -62.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.861 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds