Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46498 * 109.44009 * 181.23934 * 12 11 10 14 14 C 1.34774 * 120.00360 * 84.79625 * 13 12 11 15 15 O 1.21587 * 120.00015 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.40104 * 120.00219 * 359.97438 * 16 14 13 18 18 C 1.38464 * 120.00222 * 180.02562 * 17 16 14 19 19 N 1.32472 * 119.20287 * 359.73436 * 18 17 16 20 20 C 1.32288 * 120.75265 * 179.75702 * 19 18 17 21 21 C 1.38703 * 119.18109 * 0.50576 * 20 19 18 22 22 Cl 1.73598 * 120.73219 * 179.72584 * 21 20 19 23 23 C 1.38704 * 118.53187 * 359.75101 * 21 20 19 24 24 N 1.32286 * 119.18206 * 359.97438 * 23 21 20 25 25 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 26 26 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 29 29 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 30 30 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 31 31 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 32 32 H 1.08998 * 109.34532 * 301.12811 * 12 11 10 33 33 H 0.97005 * 119.99849 * 264.79501 * 13 12 11 34 34 H 0.96997 * 120.00334 * 180.02562 * 16 14 13 35 35 H 0.97006 * 119.99258 * 0.02562 * 17 16 14 36 36 H 1.07997 * 120.40988 * 180.25208 * 20 19 18 37 37 H 1.07998 * 120.40340 * 179.97438 * 23 21 20 38 38 H 1.09002 * 109.49555 * 178.74703 * 25 12 11 39 39 H 1.08992 * 109.52043 * 58.66705 * 25 12 11 40 40 H 1.08996 * 109.59017 * 246.20330 * 26 9 7 41 41 H 1.09009 * 109.58200 * 6.48305 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0396 -5.6477 2.9303 14 6 -0.0052 -6.2698 3.5115 15 8 -1.1367 -6.0450 3.1277 16 7 0.2042 -7.1404 4.5188 17 7 1.5081 -7.3991 4.9615 18 6 1.7233 -8.2939 5.9961 19 7 0.6844 -8.8925 6.5595 20 6 0.8550 -9.7562 7.5468 21 6 2.1394 -10.0236 7.9971 22 17 2.4091 -11.1446 9.2949 23 6 3.2034 -9.3751 7.3879 24 7 2.9627 -8.5269 6.4017 25 6 2.0674 -4.6174 0.9645 26 6 1.8137 -3.6528 -0.1983 27 1 -0.4850 0.8400 -0.0004 28 1 0.0993 -1.3344 1.6687 29 1 -0.6775 -2.6380 0.7360 30 1 1.3427 -2.9695 3.0019 31 1 -0.3882 -3.3843 3.0516 32 1 -0.0283 -5.0410 1.2304 33 1 1.9424 -5.8268 3.2368 34 1 -0.5476 -7.5884 4.9369 35 1 2.2601 -6.9513 4.5432 36 1 0.0045 -10.2441 7.9994 37 1 4.2160 -9.5604 7.7147 38 1 2.3041 -5.6063 0.5718 39 1 2.9027 -4.2541 1.5630 40 1 1.0401 -4.0603 -0.8491 41 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856859114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 90.342549 kcal Electronic energy + Delta-G solvation = -26350.107454 eV Core-core repulsion = 22328.858125 eV Total energy + Delta-G solvation = -4021.249328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.116 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.62087 -40.25974 -37.73337 -37.25012 -36.58712 -34.53332 -34.36624 -32.74492 -31.93299 -30.08303 -29.65344 -29.21131 -25.49779 -25.00496 -23.98565 -22.49070 -22.27939 -20.80873 -19.95692 -19.32543 -18.94142 -17.76198 -17.09188 -16.79357 -16.32428 -16.08968 -15.41873 -15.18544 -15.03683 -14.82021 -14.37845 -14.16205 -13.84006 -13.53775 -13.27166 -13.03807 -12.71698 -12.42294 -12.05344 -11.91708 -11.87353 -11.53124 -11.52293 -11.16910 -10.99347 -10.73421 -10.51687 -10.37679 -10.28036 -10.10296 -9.90601 -9.80052 -9.75012 -9.62332 -8.88375 -8.45854 -8.12228 -6.70451 -5.79828 -3.23260 0.38203 0.48189 1.23296 1.61166 2.76621 3.00635 3.22694 3.37610 3.43883 3.44519 3.51634 3.74864 3.92032 4.36202 4.48225 4.72072 5.09287 5.20845 5.36546 5.41153 5.48125 5.58510 5.75988 5.89867 6.03012 6.16648 6.22588 6.30301 6.34867 6.46713 6.62062 6.62986 6.76753 6.89448 6.89671 6.94919 7.35199 7.45286 7.66696 7.78105 7.97836 8.40899 8.43828 9.19433 9.82560 10.39113 11.28708 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.001882 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.454286 B =14871.510817 C =15259.561007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.148 4.148 12 C 0.166 3.834 13 N -0.735 5.735 14 C 0.712 3.288 15 O -0.563 6.563 16 N -0.525 5.525 17 N -0.488 5.488 18 C 0.573 3.427 19 N -0.558 5.558 20 C 0.219 3.781 21 C -0.214 4.214 22 Cl -0.045 7.045 23 C 0.220 3.780 24 N -0.551 5.551 25 C -0.139 4.139 26 C 0.149 3.851 27 H 0.255 0.745 28 H 0.090 0.910 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.386 0.614 34 H 0.442 0.558 35 H 0.439 0.561 36 H 0.179 0.821 37 H 0.181 0.819 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 -22.507 16.974 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.189 4.189 12 C 0.063 3.937 13 N -0.391 5.391 14 C 0.411 3.589 15 O -0.435 6.435 16 N -0.284 5.284 17 N -0.222 5.222 18 C 0.215 3.785 19 N -0.281 5.281 20 C 0.050 3.950 21 C -0.250 4.250 22 Cl -0.017 7.017 23 C 0.051 3.949 24 N -0.275 5.275 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.219 0.781 34 H 0.288 0.712 35 H 0.284 0.716 36 H 0.196 0.804 37 H 0.198 0.802 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.718 -21.377 15.737 26.961 hybrid contribution 1.102 0.019 1.117 1.570 sum 5.821 -21.359 16.854 27.823 Atomic orbital electron populations 1.70021 1.05258 1.25722 1.53464 1.25069 0.95288 0.98476 1.00740 0.86367 0.78903 0.83365 0.78092 1.20871 1.21635 1.21054 1.19117 0.92515 0.84775 1.42150 0.91681 1.44091 1.35893 1.01521 1.49945 1.20762 0.88735 0.98077 0.87738 1.22610 1.00580 0.95070 1.00597 1.21045 0.98965 0.87989 0.85714 1.45640 1.07265 1.46895 1.39259 1.15786 0.85712 0.78499 0.78864 1.91062 1.21298 1.66757 1.64364 1.44707 0.96863 1.48739 1.38069 1.42531 0.99945 1.44956 1.34766 1.18929 0.85408 0.87303 0.86814 1.67909 1.33404 1.13281 1.13509 1.22965 0.95531 0.88552 0.87927 1.22375 0.97399 1.04527 1.00702 1.98383 1.96593 1.59778 1.46930 1.22960 0.99431 0.85950 0.86546 1.67872 1.20955 1.21304 1.17339 1.22360 0.96567 0.99888 0.99119 1.20837 0.98131 0.86698 0.92194 0.93486 0.89225 0.96001 0.92687 0.92646 0.89660 0.78081 0.71214 0.71563 0.80360 0.80209 0.92524 0.91794 0.96087 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 11.20 55.49 0.62 -25.49 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.48 3.00 -172.31 -0.52 -14.99 16 10 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 11 C -0.15 -2.88 5.66 -26.59 -0.15 -3.03 16 12 C 0.17 2.78 2.41 -67.87 -0.16 2.61 16 13 N -0.74 -9.82 5.04 -58.62 -0.30 -10.12 16 14 C 0.71 10.37 8.64 -86.92 -0.75 9.62 16 15 O -0.56 -10.55 16.84 5.29 0.09 -10.46 16 16 N -0.53 -5.98 6.28 27.63 0.17 -5.81 16 17 N -0.49 -4.62 6.42 29.77 0.19 -4.43 16 18 C 0.57 5.49 8.54 -322.77 -2.76 2.73 16 19 N -0.56 -5.08 9.38 -13.90 -0.13 -5.21 16 20 C 0.22 1.48 11.12 -17.18 -0.19 1.29 16 21 C -0.21 -1.33 6.36 -39.24 -0.25 -1.58 16 22 Cl -0.04 -0.24 29.02 -51.86 -1.50 -1.75 16 23 C 0.22 1.42 11.12 -17.18 -0.19 1.23 16 24 N -0.55 -4.77 10.46 -13.90 -0.15 -4.91 16 25 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 26 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.61 7.58 -51.93 -0.39 1.21 16 33 H 0.39 4.00 6.52 -40.82 -0.27 3.73 16 34 H 0.44 4.93 8.01 -182.60 -1.46 3.47 16 35 H 0.44 3.53 6.82 -182.59 -1.24 2.28 16 36 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -32.30 358.33 -13.04 -45.35 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.02 Total: 5.40 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -4.87 Total: 10.56 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.10 Total: -70.97 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.50 Total: -1.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.30 -13.04 -45.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856859114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.691 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds