Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47265 * 300.00544 * 3 2 1 6 6 H 1.48503 * 109.46847 * 60.00291 * 3 2 1 7 7 C 1.38635 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99877 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.35774 * 117.00244 * 185.53138 * 9 7 2 11 11 C 1.38749 * 120.08551 * 5.88633 * 10 9 7 12 12 C 1.38344 * 119.97530 * 180.02562 * 11 10 9 13 13 F 1.35102 * 119.92161 * 179.97438 * 12 11 10 14 14 C 1.38544 * 120.15154 * 359.97438 * 12 11 10 15 15 C 1.38198 * 120.17657 * 359.97438 * 14 12 11 16 16 C 1.38695 * 120.01818 * 0.02562 * 15 14 12 17 17 N 1.40134 * 120.07100 * 179.72449 * 16 15 14 18 18 C 1.34775 * 120.00199 * 326.01970 * 17 16 15 19 19 O 1.21592 * 120.00000 * 354.34506 * 18 17 16 20 20 N 1.34779 * 119.99913 * 174.33912 * 18 17 16 21 21 C 1.46507 * 119.99758 * 180.02562 * 20 18 17 22 22 H 1.09004 * 109.54425 * 34.82274 * 21 20 18 23 23 C 1.53179 * 109.54218 * 274.55772 * 21 20 18 24 24 C 1.53095 * 109.16256 * 183.15305 * 23 21 20 25 25 O 1.42907 * 109.41259 * 57.60591 * 24 23 21 26 26 C 1.42898 * 114.10019 * 298.84148 * 25 24 23 27 27 C 1.53093 * 109.41247 * 61.16074 * 26 25 24 28 28 H 1.08997 * 109.57898 * 62.33058 * 27 26 25 29 29 O 1.42908 * 109.52129 * 182.48709 * 27 26 25 30 30 H 0.96999 * 120.00000 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00815 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.91168 * 180.02562 * 14 12 11 33 33 H 1.07999 * 119.98896 * 180.02562 * 15 14 12 34 34 H 0.97002 * 119.99869 * 146.02588 * 17 16 15 35 35 H 0.96997 * 120.00187 * 0.02562 * 20 18 17 36 36 H 1.08999 * 109.52332 * 303.05607 * 23 21 20 37 37 H 1.08997 * 109.52006 * 63.24889 * 23 21 20 38 38 H 1.09004 * 109.47965 * 297.62862 * 24 23 21 39 39 H 1.08992 * 109.49071 * 177.59901 * 24 23 21 40 40 H 1.09004 * 109.48369 * 301.18017 * 26 25 24 41 41 H 1.08994 * 109.48168 * 181.14066 * 26 25 24 42 42 H 0.96703 * 113.99114 * 299.68680 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0695 -3.5041 0.1155 11 6 3.4350 -3.4284 0.3496 12 6 4.1814 -4.5873 0.4669 13 9 5.5111 -4.5124 0.6943 14 6 3.5685 -5.8245 0.3518 15 6 2.2087 -5.9071 0.1198 16 6 1.4535 -4.7499 0.0009 17 7 0.0755 -4.8324 -0.2401 18 6 -0.4173 -5.8311 -0.9992 19 8 0.3403 -6.5999 -1.5590 20 7 -1.7499 -5.9776 -1.1377 21 6 -2.2856 -7.0636 -1.9624 22 1 -1.6443 -7.9404 -1.8722 23 6 -2.3413 -6.6157 -3.4262 24 6 -2.9748 -7.7266 -4.2679 25 8 -4.2765 -8.0246 -3.7589 26 6 -4.2819 -8.4935 -2.4090 27 6 -3.7010 -7.4134 -1.4928 28 1 -4.3287 -6.5233 -1.5337 29 8 -3.6516 -7.9017 -0.1506 30 1 -0.4850 0.8400 0.0004 31 1 3.9151 -2.4652 0.4393 32 1 4.1549 -6.7267 0.4445 33 1 1.7340 -6.8731 0.0310 34 1 -0.5237 -4.1706 0.1393 35 1 -2.3543 -5.3642 -0.6914 36 1 -2.9420 -5.7098 -3.5074 37 1 -1.3314 -6.4177 -3.7852 38 1 -2.3521 -8.6199 -4.2187 39 1 -3.0562 -7.3968 -5.3035 40 1 -3.6763 -9.3968 -2.3356 41 1 -5.3049 -8.7159 -2.1056 42 1 -4.5150 -8.1432 0.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860774623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -164.292532 kcal Electronic energy + Delta-G solvation = -29630.061580 eV Core-core repulsion = 25104.848568 eV Total energy + Delta-G solvation = -4525.213012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.22989 -40.56904 -39.70452 -38.60967 -36.85609 -36.40017 -34.82438 -34.00998 -32.40534 -31.50825 -30.17846 -29.37836 -28.09958 -25.51696 -24.90742 -23.67385 -22.48570 -21.67059 -20.74269 -20.43101 -18.34329 -18.26940 -17.78931 -17.70354 -17.05089 -16.53616 -16.23079 -15.64938 -15.27741 -15.20992 -15.05975 -14.92782 -14.57819 -14.28365 -14.13573 -13.95996 -13.63558 -13.51901 -13.48775 -13.22458 -12.97927 -12.51033 -12.33405 -12.11864 -11.74238 -11.67819 -11.60648 -11.36524 -10.99798 -10.74799 -10.71186 -10.61029 -10.51586 -10.02572 -9.79612 -9.72228 -9.45272 -9.00728 -8.95812 -7.86430 -7.07025 -6.60425 -4.17667 1.86380 2.13820 2.83838 3.05736 3.08214 3.13543 3.37164 3.45755 3.85087 3.87184 4.31683 4.34799 4.39795 4.49770 4.71350 4.82629 4.88237 4.91260 4.95845 5.07365 5.13190 5.25528 5.30829 5.43547 5.57601 5.59822 5.75531 5.78755 5.98291 6.04334 6.22843 6.51611 6.58782 6.70639 6.75077 6.92777 6.93830 7.08872 7.15910 7.26571 7.31561 7.67375 7.84230 8.27418 8.84863 8.87863 9.47953 10.56924 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.003127 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.717033 B = 8952.128171 C =10678.398858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.169 6.169 10 C 0.157 3.843 11 C -0.257 4.257 12 C 0.127 3.873 13 F -0.152 7.152 14 C -0.226 4.226 15 C -0.050 4.050 16 C 0.082 3.918 17 N -0.665 5.665 18 C 0.707 3.293 19 O -0.586 6.586 20 N -0.735 5.735 21 C 0.175 3.825 22 H 0.096 0.904 23 C -0.168 4.168 24 C 0.061 3.939 25 O -0.378 6.378 26 C 0.035 3.965 27 C 0.063 3.937 28 H 0.071 0.929 29 O -0.552 6.552 30 H 0.271 0.729 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.411 0.589 35 H 0.398 0.602 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -12.882 -2.736 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.101 3.899 11 C -0.278 4.278 12 C 0.107 3.893 13 F -0.130 7.130 14 C -0.247 4.247 15 C -0.070 4.070 16 C -0.013 4.013 17 N -0.311 5.311 18 C 0.408 3.592 19 O -0.464 6.464 20 N -0.389 5.389 21 C 0.069 3.931 22 H 0.114 0.886 23 C -0.208 4.208 24 C -0.016 4.016 25 O -0.296 6.296 26 C -0.043 4.043 27 C 0.003 3.997 28 H 0.089 0.911 29 O -0.357 6.357 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.154 0.846 34 H 0.247 0.753 35 H 0.232 0.768 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.347 -13.227 -3.450 16.016 hybrid contribution -0.186 1.485 0.666 1.638 sum -8.533 -11.742 -2.784 14.779 Atomic orbital electron populations 1.70020 1.05933 1.27828 1.45684 1.25278 0.95904 0.98836 0.96208 0.85621 0.79315 0.80091 0.78331 1.18941 1.20063 1.20030 1.21390 0.91992 0.80431 1.52814 0.88823 1.83936 1.33868 1.11296 1.78140 1.18807 0.89504 0.86977 0.94615 1.20856 0.94101 0.98367 1.14486 1.17438 0.76671 0.94250 1.00919 1.91409 1.32013 1.97357 1.92271 1.20446 0.95179 0.95633 1.13398 1.20485 0.92609 0.97056 0.96893 1.16606 0.82586 0.90990 1.11091 1.42199 1.06673 1.29694 1.52574 1.15831 0.82185 0.81847 0.79337 1.90888 1.57017 1.46523 1.51975 1.44918 1.05333 1.34171 1.54488 1.20727 0.92586 0.90819 0.89011 0.88564 1.22709 1.03531 0.99938 0.94572 1.22672 0.83725 0.97100 0.98125 1.87955 1.28875 1.85931 1.26852 1.23284 1.02273 0.96222 0.82489 1.22788 0.96951 0.96896 0.83042 0.91143 1.86648 1.35089 1.86749 1.27221 0.91930 0.83965 0.85960 0.84637 0.75321 0.76753 0.90388 0.89000 0.92469 0.88039 0.91933 0.88317 0.77366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.49 13.67 55.48 0.76 -22.73 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.35 9.44 30.88 0.29 -10.05 16 8 H 0.09 2.35 5.30 -52.49 -0.28 2.07 16 9 O -0.17 -4.45 9.31 0.02 0.00 -4.45 16 10 C 0.16 3.66 6.66 -38.94 -0.26 3.40 16 11 C -0.26 -5.68 9.11 -39.35 -0.36 -6.04 16 12 C 0.13 2.57 7.29 -39.43 -0.29 2.29 16 13 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 14 C -0.23 -4.27 10.02 -39.48 -0.40 -4.67 16 15 C -0.05 -0.98 8.64 -39.43 -0.34 -1.32 16 16 C 0.08 1.73 6.29 -83.44 -0.52 1.21 16 17 N -0.66 -12.52 5.20 -14.07 -0.07 -12.59 16 18 C 0.71 12.55 8.26 -86.92 -0.72 11.83 16 19 O -0.59 -11.89 13.76 5.29 0.07 -11.82 16 20 N -0.73 -10.03 5.01 -58.49 -0.29 -10.33 16 21 C 0.17 2.06 2.22 -67.74 -0.15 1.91 16 22 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 23 C -0.17 -1.84 5.72 -26.59 -0.15 -1.99 16 24 C 0.06 0.55 6.84 37.21 0.25 0.80 16 25 O -0.38 -3.65 10.77 -35.23 -0.38 -4.03 16 26 C 0.04 0.27 6.47 37.21 0.24 0.51 16 27 C 0.06 0.56 3.17 -26.59 -0.08 0.48 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 O -0.55 -4.95 13.25 -35.23 -0.47 -5.42 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.14 3.14 5.72 -52.49 -0.30 2.84 16 32 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.14 2.59 6.49 -52.49 -0.34 2.25 16 34 H 0.41 7.38 8.57 -40.82 -0.35 7.03 16 35 H 0.40 4.73 8.63 -40.82 -0.35 4.38 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.38 1.60 9.09 45.56 0.41 2.01 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -32.14 359.46 -6.65 -38.78 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -4.12 Total: 15.93 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.58 Total: -0.62 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.39 Total: -45.64 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.77 Total: -25.71 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.14 -6.65 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860774623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.511 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds