Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47266 * 52.30771 * 3 2 1 5 5 C 1.37096 * 119.99992 * 269.19508 * 4 3 2 6 6 H 1.07995 * 120.00072 * 131.34865 * 5 4 3 7 7 C 1.38960 * 119.99768 * 311.34375 * 5 4 3 8 8 N 1.31410 * 119.99836 * 168.23244 * 7 5 4 9 9 Si 1.86799 * 120.00122 * 348.23255 * 7 5 4 10 10 H 1.48507 * 109.46934 * 91.67968 * 9 7 5 11 11 H 1.48497 * 109.47232 * 211.68331 * 9 7 5 12 12 H 1.48503 * 109.47012 * 331.68615 * 9 7 5 13 13 C 1.34776 * 119.99684 * 89.19196 * 4 3 2 14 14 O 1.21289 * 120.00194 * 354.16283 * 13 4 3 15 15 C 1.50696 * 119.99713 * 174.16625 * 13 4 3 16 16 C 1.52999 * 109.47695 * 72.55503 * 15 13 4 17 17 C 1.53005 * 109.47324 * 312.55734 * 15 13 4 18 18 C 1.50701 * 109.46993 * 192.56064 * 15 13 4 19 19 C 1.38227 * 119.61569 * 165.02076 * 18 15 13 20 20 C 1.38637 * 119.15619 * 179.97438 * 19 18 15 21 21 C 1.38671 * 118.42110 * 359.75174 * 20 19 18 22 22 C 1.38185 * 119.16403 * 0.49017 * 21 20 19 23 23 C 1.50693 * 119.61887 * 179.77397 * 22 21 20 24 24 F 1.39897 * 109.47301 * 269.72879 * 23 22 21 25 25 F 1.39892 * 109.47263 * 149.72442 * 23 22 21 26 26 F 1.39905 * 109.46813 * 29.72447 * 23 22 21 27 27 N 1.31845 * 119.61856 * 344.99653 * 18 15 13 28 28 H 4.40647 * 5.51392 * 180.02562 * 4 1 2 29 29 H 1.09010 * 109.46805 * 292.30704 * 3 2 1 30 30 H 1.08998 * 109.47258 * 172.31175 * 3 2 1 31 31 H 0.96998 * 119.99940 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47230 * 169.99572 * 16 15 13 33 33 H 1.08996 * 109.47087 * 290.00387 * 16 15 13 34 34 H 1.09004 * 109.46436 * 49.99682 * 16 15 13 35 35 H 1.09003 * 109.46743 * 313.19541 * 17 15 13 36 36 H 1.09002 * 109.46737 * 73.18455 * 17 15 13 37 37 H 1.09000 * 109.47740 * 193.19077 * 17 15 13 38 38 H 1.07996 * 120.42258 * 359.95366 * 19 18 15 39 39 H 1.08001 * 120.78406 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.41428 * 180.24281 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8436 -1.0930 5 6 3.3796 -2.1747 -0.8741 6 1 2.9885 -2.9150 -1.5563 7 6 4.1310 -2.5712 0.2255 8 7 4.1746 -3.8389 0.5688 9 14 5.0793 -1.3023 1.2155 10 1 4.2310 -0.8098 2.3305 11 1 6.3101 -1.9237 1.7669 12 1 5.4503 -0.1647 0.3360 13 6 3.3436 -0.3118 -2.3136 14 8 3.0279 0.8379 -2.5363 15 6 3.9694 -1.1456 -3.4017 16 6 2.9585 -2.1829 -3.8948 17 6 5.2050 -1.8599 -2.8502 18 6 4.3742 -0.2544 -4.5476 19 6 5.2380 -0.7343 -5.5141 20 6 5.6036 0.0936 -6.5643 21 6 5.0803 1.3771 -6.6060 22 6 4.2259 1.7889 -5.6011 23 6 3.6553 3.1832 -5.6335 24 9 4.5062 4.0516 -4.9415 25 9 2.3942 3.1852 -5.0280 26 9 3.5357 3.6074 -6.9614 27 7 3.8999 0.9739 -4.6168 28 1 -1.0499 0.0000 -0.0003 29 1 3.0095 -0.3893 0.9509 30 1 3.0089 1.0192 -0.1375 31 1 4.6994 -4.1158 1.3361 32 1 3.3417 -2.6648 -4.7941 33 1 2.8002 -2.9328 -3.1199 34 1 2.0132 -1.6896 -4.1215 35 1 5.8157 -1.1504 -2.2918 36 1 4.8924 -2.6687 -2.1897 37 1 5.7869 -2.2694 -3.6759 38 1 5.6234 -1.7412 -5.4518 39 1 6.2765 -0.2544 -7.3341 40 1 5.3404 2.0477 -7.4117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868041248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -55.955950 kcal Electronic energy + Delta-G solvation = -30804.995218 eV Core-core repulsion = 26173.392517 eV Total energy + Delta-G solvation = -4631.602700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.97317 -47.55833 -47.34532 -40.70696 -38.96310 -35.32645 -34.93318 -32.68424 -32.58049 -31.64486 -30.70332 -26.89551 -26.85707 -26.10907 -25.10473 -23.92923 -22.74488 -21.14119 -19.11005 -18.52594 -18.36666 -18.27175 -17.81165 -16.99482 -16.23341 -16.11509 -15.51221 -15.19797 -14.61033 -14.41688 -14.31702 -14.22926 -13.94923 -13.88453 -13.70909 -13.56304 -13.52688 -13.31033 -13.09969 -13.04307 -12.88354 -12.52467 -12.17032 -11.97202 -11.83550 -11.54183 -11.21811 -10.98332 -10.93836 -10.62618 -10.50237 -10.14826 -9.93038 -9.71562 -9.49854 -9.34648 -9.08083 -9.02022 -8.18239 -7.74432 -6.51407 -4.24095 0.80625 1.25138 2.64486 2.99215 3.15361 3.22517 3.33947 3.55827 3.58807 3.70437 3.78209 4.05773 4.06900 4.39991 4.56781 4.61757 4.80295 4.84726 5.00127 5.02315 5.16556 5.27540 5.38634 5.60134 5.69730 5.81492 5.90725 6.00138 6.09136 6.11159 6.22503 6.32370 6.49059 6.50100 6.56419 6.59639 6.73296 7.19833 7.35699 7.98762 8.05355 8.20428 8.33417 8.91842 9.28015 9.66540 10.56456 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.004519 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.269687 B = 6194.390445 C = 7072.037657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.158 4.158 3 C 0.203 3.797 4 N -0.473 5.473 5 C -0.338 4.338 6 H 0.110 0.890 7 C 0.070 3.930 8 N -0.864 5.864 9 Si 0.867 3.133 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.258 1.258 13 C 0.499 3.501 14 O -0.537 6.537 15 C -0.012 4.012 16 C -0.135 4.135 17 C -0.146 4.146 18 C 0.155 3.845 19 C -0.137 4.137 20 C -0.081 4.081 21 C -0.139 4.139 22 C 0.028 3.972 23 C 0.523 3.477 24 F -0.175 7.175 25 F -0.158 7.158 26 F -0.180 7.180 27 N -0.379 5.379 28 H 0.210 0.790 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.276 0.724 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.121 0.879 37 H 0.044 0.956 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 4.964 -11.938 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.160 4.160 3 C 0.081 3.919 4 N -0.196 5.196 5 C -0.465 4.465 6 H 0.127 0.873 7 C -0.137 4.137 8 N -0.499 5.499 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.182 1.182 13 C 0.287 3.713 14 O -0.415 6.415 15 C -0.016 4.016 16 C -0.193 4.193 17 C -0.203 4.203 18 C 0.016 3.984 19 C -0.157 4.157 20 C -0.107 4.107 21 C -0.159 4.159 22 C -0.112 4.112 23 C 0.468 3.532 24 F -0.156 7.156 25 F -0.139 7.139 26 F -0.161 7.161 27 N -0.087 5.087 28 H 0.227 0.773 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.063 0.937 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.682 5.758 -11.265 12.933 hybrid contribution 0.773 0.435 0.078 0.890 sum 3.455 6.193 -11.187 13.246 Atomic orbital electron populations 1.24612 0.95614 1.02963 1.02116 1.23772 0.94926 0.98347 0.98932 1.18680 0.83834 0.96802 0.92620 1.43612 1.58928 1.09412 1.07670 1.19146 1.32972 0.80689 1.13730 0.87288 1.25477 0.95618 0.95742 0.96908 1.69665 1.38567 1.15320 1.26306 0.87028 0.80154 0.82535 0.80868 1.19862 1.21116 1.18190 1.20163 0.80440 0.86878 0.83855 1.90705 1.52304 1.17677 1.80815 1.19391 0.98166 0.93720 0.90349 1.21933 0.97315 0.98283 1.01776 1.22247 0.94156 1.02833 1.01071 1.21213 0.92246 0.89998 0.94960 1.22223 0.97468 1.01731 0.94287 1.21491 0.98388 0.92821 0.97998 1.21789 0.97357 0.97824 0.98951 1.21080 1.00045 0.94763 0.95280 1.17917 0.76663 0.85389 0.73236 1.93210 1.70857 1.71940 1.79585 1.93264 1.40844 1.96717 1.83098 1.93164 1.95991 1.91299 1.35686 1.67754 1.19491 1.02995 1.18417 0.77320 0.89596 0.89363 0.91369 0.92607 0.88816 0.92944 0.93250 0.86062 0.93682 0.83479 0.83845 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.54 19.25 29.55 0.57 -3.97 16 2 C -0.16 -3.49 13.67 -37.12 -0.51 -3.99 16 3 C 0.20 4.58 4.52 -6.83 -0.03 4.54 16 4 N -0.47 -10.97 1.96 -117.93 -0.23 -11.21 16 5 C -0.34 -8.00 5.98 -14.93 -0.09 -8.09 16 6 H 0.11 2.65 5.03 -52.49 -0.26 2.38 16 7 C 0.07 1.70 5.04 -17.46 -0.09 1.61 16 8 N -0.86 -22.00 13.96 55.50 0.77 -21.22 16 9 Si 0.87 19.25 25.01 -169.99 -4.25 15.00 16 10 H -0.27 -5.94 6.72 56.52 0.38 -5.56 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.50 11.39 6.36 -10.99 -0.07 11.32 16 14 O -0.54 -13.51 13.68 5.55 0.08 -13.43 16 15 C -0.01 -0.23 0.59 -156.81 -0.09 -0.32 16 16 C -0.14 -2.30 8.26 37.16 0.31 -1.99 16 17 C -0.15 -2.58 7.62 37.16 0.28 -2.30 16 18 C 0.16 2.72 5.55 -82.59 -0.46 2.26 16 19 C -0.14 -1.80 8.85 -39.44 -0.35 -2.15 16 20 C -0.08 -0.89 10.18 -39.27 -0.40 -1.29 16 21 C -0.14 -1.73 9.43 -39.44 -0.37 -2.10 16 22 C 0.03 0.47 6.30 -82.59 -0.52 -0.05 16 23 C 0.52 8.40 3.43 36.00 0.12 8.53 16 24 F -0.17 -2.85 17.30 2.25 0.04 -2.81 16 25 F -0.16 -2.93 17.04 2.25 0.04 -2.89 16 26 F -0.18 -2.44 16.43 2.25 0.04 -2.40 16 27 N -0.38 -7.41 6.87 -5.74 -0.04 -7.45 16 28 H 0.21 3.09 7.80 -54.10 -0.42 2.66 16 29 H 0.09 1.92 3.96 -51.92 -0.21 1.72 16 30 H 0.09 1.96 7.54 -51.93 -0.39 1.57 16 31 H 0.28 6.66 8.31 -40.82 -0.34 6.33 16 32 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 33 H 0.09 1.69 5.17 -51.93 -0.27 1.42 16 34 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.12 2.40 4.92 -51.93 -0.26 2.14 16 37 H 0.04 0.63 6.17 -51.93 -0.32 0.31 16 38 H 0.15 1.54 6.61 -52.49 -0.35 1.19 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 1.33 7.59 -52.48 -0.40 0.93 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -29.67 343.43 -3.78 -33.45 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.70 Total: 5.79 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.70 Total: 2.01 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.50 Total: -39.88 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.11 Total: -8.11 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.25 Total: 15.00 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.67 -3.78 -33.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868041248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.508 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds