Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47266 * 52.30771 * 3 2 1 5 5 C 1.37096 * 119.99992 * 269.19508 * 4 3 2 6 6 H 1.07995 * 120.00072 * 131.34865 * 5 4 3 7 7 C 1.38960 * 119.99768 * 311.34375 * 5 4 3 8 8 N 1.31410 * 119.99836 * 168.23244 * 7 5 4 9 9 Si 1.86799 * 120.00122 * 348.23255 * 7 5 4 10 10 H 1.48507 * 109.46934 * 91.67968 * 9 7 5 11 11 H 1.48497 * 109.47232 * 211.68331 * 9 7 5 12 12 H 1.48503 * 109.47012 * 331.68615 * 9 7 5 13 13 C 1.34776 * 119.99684 * 89.19196 * 4 3 2 14 14 O 1.21289 * 120.00194 * 354.16283 * 13 4 3 15 15 C 1.50696 * 119.99713 * 174.16625 * 13 4 3 16 16 C 1.52999 * 109.47695 * 72.55503 * 15 13 4 17 17 C 1.53005 * 109.47324 * 312.55734 * 15 13 4 18 18 C 1.50701 * 109.46993 * 192.56064 * 15 13 4 19 19 C 1.38227 * 119.61569 * 165.02076 * 18 15 13 20 20 C 1.38637 * 119.15619 * 179.97438 * 19 18 15 21 21 C 1.38671 * 118.42110 * 359.75174 * 20 19 18 22 22 C 1.38185 * 119.16403 * 0.49017 * 21 20 19 23 23 C 1.50693 * 119.61887 * 179.77397 * 22 21 20 24 24 F 1.39897 * 109.47301 * 269.72879 * 23 22 21 25 25 F 1.39892 * 109.47263 * 149.72442 * 23 22 21 26 26 F 1.39905 * 109.46813 * 29.72447 * 23 22 21 27 27 N 1.31845 * 119.61856 * 344.99653 * 18 15 13 28 28 H 4.40647 * 5.51392 * 180.02562 * 4 1 2 29 29 H 1.09010 * 109.46805 * 292.30704 * 3 2 1 30 30 H 1.08998 * 109.47258 * 172.31175 * 3 2 1 31 31 H 0.96998 * 119.99940 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47230 * 169.99572 * 16 15 13 33 33 H 1.08996 * 109.47087 * 290.00387 * 16 15 13 34 34 H 1.09004 * 109.46436 * 49.99682 * 16 15 13 35 35 H 1.09003 * 109.46743 * 313.19541 * 17 15 13 36 36 H 1.09002 * 109.46737 * 73.18455 * 17 15 13 37 37 H 1.09000 * 109.47740 * 193.19077 * 17 15 13 38 38 H 1.07996 * 120.42258 * 359.95366 * 19 18 15 39 39 H 1.08001 * 120.78406 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.41428 * 180.24281 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8436 -1.0930 5 6 3.3796 -2.1747 -0.8741 6 1 2.9885 -2.9150 -1.5563 7 6 4.1310 -2.5712 0.2255 8 7 4.1746 -3.8389 0.5688 9 14 5.0793 -1.3023 1.2155 10 1 4.2310 -0.8098 2.3305 11 1 6.3101 -1.9237 1.7669 12 1 5.4503 -0.1647 0.3360 13 6 3.3436 -0.3118 -2.3136 14 8 3.0279 0.8379 -2.5363 15 6 3.9694 -1.1456 -3.4017 16 6 2.9585 -2.1829 -3.8948 17 6 5.2050 -1.8599 -2.8502 18 6 4.3742 -0.2544 -4.5476 19 6 5.2380 -0.7343 -5.5141 20 6 5.6036 0.0936 -6.5643 21 6 5.0803 1.3771 -6.6060 22 6 4.2259 1.7889 -5.6011 23 6 3.6553 3.1832 -5.6335 24 9 4.5062 4.0516 -4.9415 25 9 2.3942 3.1852 -5.0280 26 9 3.5357 3.6074 -6.9614 27 7 3.8999 0.9739 -4.6168 28 1 -1.0499 0.0000 -0.0003 29 1 3.0095 -0.3893 0.9509 30 1 3.0089 1.0192 -0.1375 31 1 4.6994 -4.1158 1.3361 32 1 3.3417 -2.6648 -4.7941 33 1 2.8002 -2.9328 -3.1199 34 1 2.0132 -1.6896 -4.1215 35 1 5.8157 -1.1504 -2.2918 36 1 4.8924 -2.6687 -2.1897 37 1 5.7869 -2.2694 -3.6759 38 1 5.6234 -1.7412 -5.4518 39 1 6.2765 -0.2544 -7.3341 40 1 5.3404 2.0477 -7.4117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868041248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -72.917203 kcal Electronic energy + Delta-G solvation = -30805.730713 eV Core-core repulsion = 26173.392517 eV Total energy + Delta-G solvation = -4632.338196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.21377 -48.75239 -48.67133 -41.97669 -40.50522 -37.00913 -36.48754 -34.37337 -33.67718 -33.36567 -31.95517 -28.56010 -28.19643 -27.36055 -26.90023 -25.19897 -23.88593 -22.55442 -20.64816 -20.24635 -19.60253 -19.52256 -19.13055 -18.50949 -17.69825 -17.25960 -17.09849 -16.72513 -16.12632 -15.73956 -15.68036 -15.49616 -15.35598 -15.23792 -15.13291 -14.86841 -14.85400 -14.82526 -14.69785 -14.40674 -14.35164 -13.82147 -13.60530 -13.42367 -13.34291 -13.03638 -12.82275 -12.64583 -12.35427 -12.16120 -12.05209 -11.85361 -11.41998 -11.05172 -10.94330 -10.91096 -10.73796 -10.18241 -9.79693 -9.55490 -8.41163 -6.13445 -0.25108 0.26485 1.18726 1.32063 1.41061 1.46145 1.68268 1.92530 2.00272 2.21937 2.49803 2.50616 2.84226 2.91014 2.97643 3.35614 3.36932 3.60078 3.85395 3.97165 4.02659 4.10765 4.19580 4.26977 4.32197 4.37895 4.42946 4.61338 4.81358 4.88810 4.95938 5.04849 5.06430 5.06846 5.18792 5.30610 5.51030 5.55712 5.74507 6.22488 6.32484 6.70787 6.88078 7.05220 7.46826 7.87810 8.69358 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.004519 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.269687 B = 6194.390445 C = 7072.037657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.224 4.224 3 C 0.200 3.800 4 N -0.482 5.482 5 C -0.323 4.323 6 H 0.101 0.899 7 C 0.045 3.955 8 N -0.893 5.893 9 Si 0.902 3.098 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.269 1.269 13 C 0.487 3.513 14 O -0.566 6.566 15 C -0.011 4.011 16 C -0.126 4.126 17 C -0.136 4.136 18 C 0.124 3.876 19 C -0.127 4.127 20 C -0.062 4.062 21 C -0.124 4.124 22 C -0.001 4.001 23 C 0.522 3.478 24 F -0.181 7.181 25 F -0.181 7.181 26 F -0.164 7.164 27 N -0.434 5.434 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.279 0.721 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.179 0.821 39 H 0.198 0.802 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 4.333 -14.519 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.225 4.225 3 C 0.078 3.922 4 N -0.205 5.205 5 C -0.450 4.450 6 H 0.118 0.882 7 C -0.159 4.159 8 N -0.530 5.530 9 Si 0.729 3.271 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.194 1.194 13 C 0.277 3.723 14 O -0.446 6.446 15 C -0.015 4.015 16 C -0.183 4.183 17 C -0.193 4.193 18 C -0.016 4.016 19 C -0.146 4.146 20 C -0.087 4.087 21 C -0.144 4.144 22 C -0.140 4.140 23 C 0.467 3.533 24 F -0.162 7.162 25 F -0.162 7.162 26 F -0.146 7.146 27 N -0.142 5.142 28 H 0.271 0.729 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.197 0.803 39 H 0.215 0.785 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.808 5.129 -13.842 15.245 hybrid contribution 0.344 0.717 0.785 1.117 sum 4.152 5.845 -13.058 14.897 Atomic orbital electron populations 1.25647 0.96523 0.99950 0.99156 1.23993 0.95630 1.01165 1.01715 1.18576 0.84994 0.96243 0.92383 1.43801 1.59268 1.09285 1.08175 1.19058 1.32032 0.80754 1.13150 0.88171 1.25758 0.96160 0.96422 0.97602 1.69706 1.39867 1.16249 1.27219 0.86473 0.79653 0.80938 0.80024 1.19499 1.20468 1.19363 1.21026 0.79812 0.87116 0.84386 1.90678 1.53391 1.19176 1.81367 1.19387 0.98391 0.93891 0.89844 1.21841 0.96360 0.97335 1.02771 1.22113 0.93928 1.01296 1.01999 1.21122 0.94693 0.89722 0.96035 1.22536 0.95564 1.03303 0.93242 1.22094 0.97431 0.91324 0.97865 1.22221 0.95130 0.99062 0.98008 1.21187 1.02052 0.94281 0.96489 1.18080 0.75770 0.85956 0.73543 1.93188 1.70884 1.72259 1.79906 1.93208 1.42436 1.96854 1.83696 1.93182 1.95877 1.91216 1.34286 1.67450 1.21638 1.04492 1.20646 0.72887 0.89998 0.90286 0.91134 0.88706 0.90441 0.94788 0.95246 0.88421 0.89267 0.80336 0.78517 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.34 19.25 74.32 1.43 -5.91 16 2 C -0.22 -10.05 13.67 31.12 0.43 -9.62 16 3 C 0.20 9.43 4.52 84.57 0.38 9.81 16 4 N -0.48 -23.16 1.96 -645.41 -1.27 -24.43 16 5 C -0.32 -15.66 5.98 84.04 0.50 -15.16 16 6 H 0.10 5.02 5.03 -2.91 -0.01 5.00 16 7 C 0.05 2.24 5.04 84.93 0.43 2.67 16 8 N -0.89 -46.12 13.96 21.67 0.30 -45.82 16 9 Si 0.90 40.40 25.01 68.60 1.72 42.12 16 10 H -0.27 -11.76 6.72 99.48 0.67 -11.10 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.49 23.01 6.36 87.66 0.56 23.57 16 14 O -0.57 -29.84 13.68 -3.06 -0.04 -29.89 16 15 C -0.01 -0.42 0.59 -53.67 -0.03 -0.46 16 16 C -0.13 -4.20 8.26 71.98 0.59 -3.60 16 17 C -0.14 -4.70 7.62 71.98 0.55 -4.15 16 18 C 0.12 4.18 5.55 42.55 0.24 4.41 16 19 C -0.13 -2.80 8.85 22.36 0.20 -2.60 16 20 C -0.06 -1.02 10.18 22.47 0.23 -0.79 16 21 C -0.12 -2.62 9.43 22.36 0.21 -2.41 16 22 C 0.00 -0.03 6.30 42.54 0.27 0.24 16 23 C 0.52 16.75 3.43 71.23 0.24 17.00 16 24 F -0.18 -5.98 17.30 44.97 0.78 -5.20 16 25 F -0.18 -6.97 17.04 44.97 0.77 -6.20 16 26 F -0.16 -4.25 16.43 44.97 0.74 -3.51 16 27 N -0.43 -17.02 6.87 -172.08 -1.18 -18.20 16 28 H 0.25 6.69 7.80 -4.42 -0.03 6.65 16 29 H 0.08 3.82 3.96 -2.38 -0.01 3.81 16 30 H 0.08 3.75 7.54 -2.39 -0.02 3.73 16 31 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 32 H 0.09 2.36 7.88 -2.39 -0.02 2.34 16 33 H 0.08 2.82 5.17 -2.39 -0.01 2.81 16 34 H 0.03 1.22 8.11 -2.38 -0.02 1.20 16 35 H 0.03 1.09 8.07 -2.39 -0.02 1.08 16 36 H 0.10 3.86 4.92 -2.39 -0.01 3.85 16 37 H 0.09 2.21 6.17 -2.39 -0.01 2.19 16 38 H 0.18 2.69 6.61 -2.91 -0.02 2.67 16 39 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.17 2.43 7.59 -2.91 -0.02 2.41 16 Total: -1.00 -69.68 343.43 9.11 -60.57 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.07 Total: 17.56 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.22 Total: 13.00 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -2.15 Total: -88.45 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.04 Total: -29.89 kcal Atomic # 9 Polarization: -17.19 SS G_CDS: 2.28 Total: -14.91 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.72 Total: 42.12 kcal Total: -69.68 9.11 -60.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868041248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.348 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds