Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 110.35473 * 2 1 4 4 C 1.34779 * 120.00156 * 302.14433 * 3 2 1 5 5 O 1.21283 * 119.99597 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00088 * 179.97438 * 4 3 2 7 7 F 1.39901 * 109.47031 * 179.97438 * 6 4 3 8 8 F 1.39902 * 109.47092 * 300.00011 * 6 4 3 9 9 F 1.39905 * 109.47008 * 59.99704 * 6 4 3 10 10 C 1.54594 * 110.30959 * 237.85611 * 2 1 3 11 11 C 1.54931 * 102.92412 * 219.12710 * 10 2 1 12 12 N 1.48533 * 103.22481 * 37.41730 * 11 10 2 13 13 C 1.46905 * 110.99865 * 200.27796 * 12 11 10 14 14 C 1.52995 * 109.47126 * 287.39798 * 13 12 11 15 15 C 1.53000 * 109.47223 * 180.02562 * 14 13 12 16 16 S 1.81005 * 109.47417 * 179.97438 * 15 14 13 17 17 C 1.76189 * 100.00097 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00034 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48490 * 109.46901 * 150.00205 * 21 19 17 25 25 C 1.47895 * 105.82052 * 320.78980 * 12 11 10 26 26 H 1.09000 * 109.47061 * 297.86015 * 1 2 3 27 27 H 1.09006 * 109.47220 * 57.85585 * 1 2 3 28 28 H 1.08993 * 109.47556 * 177.85784 * 1 2 3 29 29 H 0.97002 * 119.99998 * 122.14006 * 3 2 1 30 30 H 1.09002 * 110.72578 * 337.49343 * 10 2 1 31 31 H 1.09011 * 110.72260 * 100.58904 * 10 2 1 32 32 H 1.08997 * 110.66982 * 278.97697 * 11 10 2 33 33 H 1.09000 * 110.66618 * 155.84974 * 11 10 2 34 34 H 1.08997 * 109.47249 * 167.39170 * 13 12 11 35 35 H 1.09002 * 109.47225 * 47.39509 * 13 12 11 36 36 H 1.08997 * 109.47570 * 59.99568 * 14 13 12 37 37 H 1.09003 * 109.47328 * 299.99782 * 14 13 12 38 38 H 1.09005 * 109.47152 * 59.99562 * 15 14 13 39 39 H 1.09002 * 109.47073 * 299.99677 * 15 14 13 40 40 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.92088 * 144.68600 * 25 12 11 42 42 H 1.09004 * 109.92284 * 265.98112 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0396 1.3735 0.0000 4 6 1.6917 2.2214 -0.9883 5 8 0.9572 1.8470 -1.8778 6 6 2.2155 3.6344 -0.9880 7 9 1.7203 4.3155 -2.1051 8 9 1.7993 4.2857 0.1782 9 9 3.6135 3.6136 -1.0368 10 6 2.0666 -0.7714 -1.2276 11 6 3.2854 -1.5348 -0.6515 12 7 2.8312 -1.9236 0.7082 13 6 3.9750 -2.2263 1.5788 14 6 4.5930 -3.5627 1.1629 15 6 5.7839 -3.8783 2.0701 16 16 6.5146 -5.4596 1.5785 17 6 7.8234 -5.5702 2.7528 18 1 7.9635 -4.7848 3.4809 19 6 8.6746 -6.6666 2.7423 20 7 9.6527 -6.7489 3.6193 21 14 8.4319 -8.0253 1.4834 22 1 7.5160 -9.0549 2.0368 23 1 7.8440 -7.4537 0.2453 24 1 9.7428 -8.6472 1.1676 25 6 2.0645 -0.7684 1.2228 26 1 -0.3633 0.4802 0.9086 27 1 -0.3634 0.5468 -0.8702 28 1 -0.3634 -1.0268 -0.0384 29 1 2.6273 1.6728 0.7113 30 1 1.3172 -1.4682 -1.6031 31 1 2.3762 -0.0806 -2.0121 32 1 4.1563 -0.8819 -0.5941 33 1 3.5045 -2.4182 -1.2512 34 1 3.6377 -2.2883 2.6135 35 1 4.7209 -1.4368 1.4866 36 1 4.9303 -3.5007 0.1283 37 1 3.8472 -4.3523 1.2552 38 1 5.4462 -3.9404 3.1046 39 1 6.5299 -3.0888 1.9782 40 1 10.2473 -7.5153 3.6121 41 1 1.2326 -1.1176 1.8346 42 1 2.7161 -0.1226 1.8114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879764774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -187.138990 kcal Electronic energy + Delta-G solvation = -27329.439209 eV Core-core repulsion = 22827.591937 eV Total energy + Delta-G solvation = -4501.847273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.84620 -48.37856 -48.32794 -41.19300 -39.07755 -35.91722 -33.66141 -32.45815 -31.54759 -30.04061 -28.12635 -27.02754 -25.71587 -24.60582 -22.82606 -22.05086 -20.91164 -20.39696 -19.60108 -19.29255 -19.02435 -17.49673 -16.82459 -16.46299 -16.11311 -15.57044 -15.40184 -15.07512 -15.03983 -14.98767 -14.73894 -14.72836 -14.45437 -14.43821 -14.09525 -14.04214 -13.86779 -13.58879 -13.23414 -12.92238 -12.75799 -12.72113 -12.02235 -11.94419 -11.88163 -11.51122 -11.42699 -11.35357 -11.08520 -11.04030 -10.69791 -10.47693 -10.17260 -9.94808 -9.80022 -9.02553 -8.72101 -8.58668 -6.96650 -6.30474 -4.02875 1.19518 1.30553 2.49850 2.97430 3.07766 3.28779 3.43830 3.46557 3.52709 3.56774 3.79990 3.89545 4.20848 4.29857 4.37562 4.78000 4.83165 4.91571 4.93731 5.04121 5.08547 5.16039 5.21564 5.37431 5.43009 5.46831 5.55840 5.64258 5.69233 5.72428 5.77679 5.81858 5.87776 6.16540 6.36251 6.40386 6.55593 6.62366 6.79895 6.96433 7.93262 8.41822 9.15461 10.78982 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.001948 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.395618 B =14369.317629 C =14805.909881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 N -0.691 5.691 4 C 0.486 3.514 5 O -0.469 6.469 6 C 0.448 3.552 7 F -0.153 7.153 8 F -0.168 7.168 9 F -0.167 7.167 10 C -0.124 4.124 11 C 0.031 3.969 12 N -0.510 5.510 13 C 0.050 3.950 14 C -0.094 4.094 15 C -0.083 4.083 16 S -0.214 6.214 17 C -0.503 4.503 18 H 0.087 0.913 19 C 0.091 3.909 20 N -0.882 5.882 21 Si 0.862 3.138 22 H -0.268 1.268 23 H -0.238 1.238 24 H -0.276 1.276 25 C 0.037 3.963 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.409 0.591 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.270 0.730 41 H 0.099 0.901 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.125 20.801 -8.017 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.076 3.924 3 N -0.345 5.345 4 C 0.264 3.736 5 O -0.341 6.341 6 C 0.390 3.610 7 F -0.134 7.134 8 F -0.149 7.149 9 F -0.148 7.148 10 C -0.163 4.163 11 C -0.096 4.096 12 N -0.234 5.234 13 C -0.079 4.079 14 C -0.133 4.133 15 C -0.232 4.232 16 S 0.014 5.986 17 C -0.650 4.650 18 H 0.105 0.895 19 C -0.117 4.117 20 N -0.519 5.519 21 Si 0.687 3.313 22 H -0.193 1.193 23 H -0.162 1.162 24 H -0.201 1.201 25 C -0.092 4.092 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.246 0.754 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.096 19.228 -9.414 29.363 hybrid contribution 1.581 1.402 1.129 2.396 sum -18.515 20.630 -8.285 28.932 Atomic orbital electron populations 1.22209 0.92186 1.03872 1.03410 1.21466 0.95364 0.78647 0.96941 1.46250 1.49751 1.12371 1.26089 1.20224 0.83354 0.85583 0.84480 1.90860 1.33567 1.74782 1.34899 1.20358 0.76559 0.89067 0.74984 1.93278 1.87254 1.80942 1.51958 1.93273 1.89891 1.83348 1.48436 1.93287 1.28687 1.96794 1.96046 1.22912 0.98302 0.98829 0.96226 1.23357 0.96032 0.99609 0.90642 1.64849 1.21963 1.34156 1.02468 1.22390 0.90805 0.97718 0.97004 1.21262 0.96541 0.96051 0.99446 1.23017 0.98795 0.99968 1.01398 1.84176 1.39386 1.25872 1.49178 1.22121 1.13970 1.11198 1.17736 0.89456 1.24808 0.93844 0.97571 0.95495 1.69939 1.16646 1.30539 1.34749 0.86662 0.78524 0.82662 0.83453 1.19339 1.16163 1.20124 1.23194 0.99168 0.91759 0.95042 0.92120 0.90248 0.90243 0.75442 0.89011 0.90270 0.93424 0.88999 0.90490 0.94381 0.91595 0.90557 0.91428 0.91656 0.91967 0.88325 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.15 37.16 0.30 -0.78 16 2 C 0.16 1.13 0.94 -130.46 -0.12 1.01 16 3 N -0.69 -4.31 5.15 -46.35 -0.24 -4.55 16 4 C 0.49 3.86 6.55 -10.99 -0.07 3.78 16 5 O -0.47 -4.94 13.50 5.56 0.07 -4.87 16 6 C 0.45 3.33 3.43 36.00 0.12 3.45 16 7 F -0.15 -1.37 16.92 2.25 0.04 -1.33 16 8 F -0.17 -1.16 17.30 2.25 0.04 -1.12 16 9 F -0.17 -1.25 17.30 2.25 0.04 -1.21 16 10 C -0.12 -1.02 5.85 -24.87 -0.15 -1.17 16 11 C 0.03 0.29 5.91 -1.90 -0.01 0.28 16 12 N -0.51 -4.95 5.24 -230.46 -1.21 -6.15 16 13 C 0.05 0.56 4.71 -3.82 -0.02 0.54 16 14 C -0.09 -1.36 5.31 -26.73 -0.14 -1.50 16 15 C -0.08 -1.53 5.67 37.16 0.21 -1.32 16 16 S -0.21 -5.13 19.41 -107.50 -2.09 -7.21 16 17 C -0.50 -14.44 10.04 30.94 0.31 -14.13 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.09 2.65 5.50 -17.43 -0.10 2.55 16 20 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 21 Si 0.86 21.40 27.74 -169.99 -4.72 16.69 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.04 0.27 6.12 -2.76 -0.02 0.25 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.67 6.04 -51.93 -0.31 0.35 16 28 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 29 H 0.41 1.74 8.09 -40.82 -0.33 1.41 16 30 H 0.09 0.76 7.84 -51.93 -0.41 0.35 16 31 H 0.08 0.71 6.81 -51.92 -0.35 0.36 16 32 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 33 H 0.09 0.90 7.80 -51.93 -0.41 0.50 16 34 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.04 0.41 7.83 -51.93 -0.41 0.01 16 36 H 0.07 0.96 7.37 -51.93 -0.38 0.58 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.25 8.14 -51.91 -0.42 0.83 16 39 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.10 0.66 7.68 -51.93 -0.40 0.26 16 42 H 0.05 0.33 7.09 -51.93 -0.37 -0.04 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -31.52 365.14 -7.34 -38.85 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.88 Total: -1.75 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.32 Total: -7.03 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.67 Total: -36.53 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.07 Total: -4.87 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.12 Total: -3.65 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.69 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.09 Total: -7.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.52 -7.34 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879764774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.286 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds