Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 110.35473 * 2 1 4 4 C 1.34779 * 120.00156 * 302.14433 * 3 2 1 5 5 O 1.21283 * 119.99597 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00088 * 179.97438 * 4 3 2 7 7 F 1.39901 * 109.47031 * 179.97438 * 6 4 3 8 8 F 1.39902 * 109.47092 * 300.00011 * 6 4 3 9 9 F 1.39905 * 109.47008 * 59.99704 * 6 4 3 10 10 C 1.54594 * 110.30959 * 237.85611 * 2 1 3 11 11 C 1.54931 * 102.92412 * 219.12710 * 10 2 1 12 12 N 1.48533 * 103.22481 * 37.41730 * 11 10 2 13 13 C 1.46905 * 110.99865 * 200.27796 * 12 11 10 14 14 C 1.52995 * 109.47126 * 287.39798 * 13 12 11 15 15 C 1.53000 * 109.47223 * 180.02562 * 14 13 12 16 16 S 1.81005 * 109.47417 * 179.97438 * 15 14 13 17 17 C 1.76189 * 100.00097 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00034 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48490 * 109.46901 * 150.00205 * 21 19 17 25 25 C 1.47895 * 105.82052 * 320.78980 * 12 11 10 26 26 H 1.09000 * 109.47061 * 297.86015 * 1 2 3 27 27 H 1.09006 * 109.47220 * 57.85585 * 1 2 3 28 28 H 1.08993 * 109.47556 * 177.85784 * 1 2 3 29 29 H 0.97002 * 119.99998 * 122.14006 * 3 2 1 30 30 H 1.09002 * 110.72578 * 337.49343 * 10 2 1 31 31 H 1.09011 * 110.72260 * 100.58904 * 10 2 1 32 32 H 1.08997 * 110.66982 * 278.97697 * 11 10 2 33 33 H 1.09000 * 110.66618 * 155.84974 * 11 10 2 34 34 H 1.08997 * 109.47249 * 167.39170 * 13 12 11 35 35 H 1.09002 * 109.47225 * 47.39509 * 13 12 11 36 36 H 1.08997 * 109.47570 * 59.99568 * 14 13 12 37 37 H 1.09003 * 109.47328 * 299.99782 * 14 13 12 38 38 H 1.09005 * 109.47152 * 59.99562 * 15 14 13 39 39 H 1.09002 * 109.47073 * 299.99677 * 15 14 13 40 40 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.92088 * 144.68600 * 25 12 11 42 42 H 1.09004 * 109.92284 * 265.98112 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0396 1.3735 0.0000 4 6 1.6917 2.2214 -0.9883 5 8 0.9572 1.8470 -1.8778 6 6 2.2155 3.6344 -0.9880 7 9 1.7203 4.3155 -2.1051 8 9 1.7993 4.2857 0.1782 9 9 3.6135 3.6136 -1.0368 10 6 2.0666 -0.7714 -1.2276 11 6 3.2854 -1.5348 -0.6515 12 7 2.8312 -1.9236 0.7082 13 6 3.9750 -2.2263 1.5788 14 6 4.5930 -3.5627 1.1629 15 6 5.7839 -3.8783 2.0701 16 16 6.5146 -5.4596 1.5785 17 6 7.8234 -5.5702 2.7528 18 1 7.9635 -4.7848 3.4809 19 6 8.6746 -6.6666 2.7423 20 7 9.6527 -6.7489 3.6193 21 14 8.4319 -8.0253 1.4834 22 1 7.5160 -9.0549 2.0368 23 1 7.8440 -7.4537 0.2453 24 1 9.7428 -8.6472 1.1676 25 6 2.0645 -0.7684 1.2228 26 1 -0.3633 0.4802 0.9086 27 1 -0.3634 0.5468 -0.8702 28 1 -0.3634 -1.0268 -0.0384 29 1 2.6273 1.6728 0.7113 30 1 1.3172 -1.4682 -1.6031 31 1 2.3762 -0.0806 -2.0121 32 1 4.1563 -0.8819 -0.5941 33 1 3.5045 -2.4182 -1.2512 34 1 3.6377 -2.2883 2.6135 35 1 4.7209 -1.4368 1.4866 36 1 4.9303 -3.5007 0.1283 37 1 3.8472 -4.3523 1.2552 38 1 5.4462 -3.9404 3.1046 39 1 6.5299 -3.0888 1.9782 40 1 10.2473 -7.5153 3.6121 41 1 1.2326 -1.1176 1.8346 42 1 2.7161 -0.1226 1.8114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879764774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -208.796351 kcal Electronic energy + Delta-G solvation = -27330.378343 eV Core-core repulsion = 22827.591937 eV Total energy + Delta-G solvation = -4502.786406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.45508 -48.96671 -48.96136 -41.82906 -39.79089 -36.71772 -34.68854 -34.57257 -32.36631 -30.73366 -28.72936 -28.12135 -27.65794 -25.51196 -23.54601 -22.93614 -21.79376 -21.04768 -20.21235 -19.89067 -19.66378 -19.58587 -17.53240 -17.11206 -17.09612 -16.82284 -16.44050 -16.26192 -16.04947 -15.70119 -15.63259 -15.34535 -15.21650 -15.06627 -15.05588 -14.92759 -14.90494 -14.51167 -14.33186 -14.12593 -13.69590 -13.49054 -13.39783 -13.11449 -13.07061 -12.83380 -12.58969 -12.34104 -12.16830 -12.08058 -11.95555 -11.62368 -11.56880 -11.28797 -11.15730 -10.55174 -10.54476 -9.45715 -8.98088 -8.51671 -6.22437 0.57240 0.69574 1.13664 1.32511 1.48244 1.75813 1.91595 2.25110 2.48198 2.69646 2.86472 2.86830 2.97420 3.03243 3.27913 3.56903 3.78978 3.99621 4.21777 4.23600 4.25791 4.29274 4.37974 4.45810 4.62237 4.71501 4.75012 4.80326 4.82026 4.91663 4.99357 5.05347 5.14905 5.21295 5.25027 5.32157 5.70072 5.79903 5.87495 5.99343 6.10500 6.42491 6.92773 8.61297 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.001948 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.395618 B =14369.317629 C =14805.909881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 N -0.679 5.679 4 C 0.489 3.511 5 O -0.498 6.498 6 C 0.456 3.544 7 F -0.163 7.163 8 F -0.163 7.163 9 F -0.166 7.166 10 C -0.120 4.120 11 C 0.031 3.969 12 N -0.518 5.518 13 C 0.060 3.940 14 C -0.083 4.083 15 C -0.069 4.069 16 S -0.224 6.224 17 C -0.521 4.521 18 H 0.051 0.949 19 C 0.036 3.964 20 N -0.923 5.923 21 Si 0.926 3.074 22 H -0.261 1.261 23 H -0.229 1.229 24 H -0.264 1.264 25 C 0.039 3.961 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.421 0.579 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.276 0.724 41 H 0.110 0.890 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.446 21.184 -8.453 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.079 3.921 3 N -0.333 5.333 4 C 0.267 3.733 5 O -0.372 6.372 6 C 0.398 3.602 7 F -0.144 7.144 8 F -0.144 7.144 9 F -0.147 7.147 10 C -0.159 4.159 11 C -0.096 4.096 12 N -0.243 5.243 13 C -0.070 4.070 14 C -0.122 4.122 15 C -0.218 4.218 16 S 0.004 5.996 17 C -0.668 4.668 18 H 0.069 0.931 19 C -0.168 4.168 20 N -0.561 5.561 21 Si 0.747 3.253 22 H -0.186 1.186 23 H -0.152 1.152 24 H -0.189 1.189 25 C -0.089 4.089 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.259 0.741 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.409 19.628 -9.825 30.662 hybrid contribution 1.960 1.397 1.327 2.749 sum -19.449 21.025 -8.498 29.875 Atomic orbital electron populations 1.22162 0.91795 1.04029 1.03253 1.21413 0.95595 0.78708 0.96381 1.46176 1.49332 1.11887 1.25871 1.20256 0.82964 0.85746 0.84338 1.90856 1.34941 1.75305 1.36052 1.20203 0.76476 0.88738 0.74816 1.93259 1.87413 1.81136 1.52587 1.93285 1.89843 1.83235 1.48033 1.93292 1.28590 1.96774 1.96039 1.22845 0.97921 0.98674 0.96473 1.23332 0.96418 0.99359 0.90514 1.64790 1.21316 1.35769 1.02386 1.22210 0.91450 0.95736 0.97622 1.21144 0.94668 0.97993 0.98352 1.23084 0.99910 0.96432 1.02336 1.83902 1.37779 1.30023 1.47888 1.22345 1.15857 1.10357 1.18256 0.93064 1.25792 0.93470 1.00068 0.97504 1.70040 1.17728 1.31726 1.36603 0.85709 0.79062 0.79492 0.81063 1.18612 1.15231 1.18893 1.23238 0.99453 0.91161 0.95045 0.90894 0.91873 0.89835 0.74055 0.89138 0.91126 0.93391 0.89867 0.89588 0.93744 0.91682 0.90937 0.91412 0.91731 0.91441 0.87198 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.15 71.98 0.59 -1.22 16 2 C 0.16 1.95 0.94 4.48 0.00 1.95 16 3 N -0.68 -7.03 5.15 -418.95 -2.16 -9.19 16 4 C 0.49 7.12 6.55 87.66 0.57 7.70 16 5 O -0.50 -10.15 13.50 -3.04 -0.04 -10.19 16 6 C 0.46 6.20 3.43 71.24 0.24 6.44 16 7 F -0.16 -2.79 16.92 44.97 0.76 -2.03 16 8 F -0.16 -1.97 17.30 44.97 0.78 -1.19 16 9 F -0.17 -2.23 17.30 44.97 0.78 -1.46 16 10 C -0.12 -1.81 5.85 31.80 0.19 -1.62 16 11 C 0.03 0.52 5.91 86.65 0.51 1.04 16 12 N -0.52 -8.71 5.24 -883.05 -4.63 -13.34 16 13 C 0.06 1.17 4.71 86.30 0.41 1.57 16 14 C -0.08 -2.22 5.31 30.59 0.16 -2.05 16 15 C -0.07 -2.47 5.67 71.98 0.41 -2.06 16 16 S -0.22 -10.57 19.41 -56.49 -1.10 -11.67 16 17 C -0.52 -30.38 10.04 67.96 0.68 -29.70 16 18 H 0.05 3.24 8.03 -2.91 -0.02 3.22 16 19 C 0.04 2.12 5.50 84.86 0.47 2.59 16 20 N -0.92 -56.56 13.97 21.65 0.30 -56.26 16 21 Si 0.93 43.91 27.74 68.60 1.90 45.81 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.23 -10.45 6.74 99.48 0.67 -9.78 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.04 0.44 6.12 86.45 0.53 0.97 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.99 6.04 -2.38 -0.01 0.98 16 28 H 0.08 0.91 8.11 -2.39 -0.02 0.89 16 29 H 0.42 2.43 8.09 -92.71 -0.75 1.68 16 30 H 0.09 1.39 7.84 -2.39 -0.02 1.37 16 31 H 0.07 1.21 6.81 -2.38 -0.02 1.19 16 32 H 0.05 0.80 7.81 -2.39 -0.02 0.78 16 33 H 0.08 1.53 7.80 -2.39 -0.02 1.51 16 34 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.04 0.83 7.83 -2.39 -0.02 0.81 16 36 H 0.06 1.77 7.37 -2.39 -0.02 1.76 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.28 15.61 8.31 -92.71 -0.77 14.83 16 41 H 0.11 1.07 7.68 -2.39 -0.02 1.06 16 42 H 0.07 0.60 7.09 -2.39 -0.02 0.58 16 Total: -1.00 -68.23 365.14 1.62 -66.60 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.27 Total: 7.31 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.76 Total: -14.39 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -6.49 Total: -78.79 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.04 Total: -10.19 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 2.32 Total: -4.68 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.90 Total: 45.81 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.10 Total: -11.67 kcal Total: -68.23 1.62 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879764774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.192 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds