Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37674 * 119.96248 * 2 1 4 4 C 1.39741 * 119.92835 * 180.27310 * 3 2 1 5 5 C 1.47575 * 120.07664 * 179.70046 * 4 3 2 6 6 N 1.34775 * 120.00161 * 180.02562 * 5 4 3 7 7 O 1.21590 * 119.99911 * 0.02562 * 5 4 3 8 8 C 1.39783 * 119.85209 * 359.71838 * 4 3 2 9 9 C 1.37632 * 119.93086 * 0.02562 * 8 4 3 10 10 C 1.39138 * 119.96178 * 179.71797 * 2 1 3 11 11 N 1.39340 * 119.93151 * 0.02562 * 10 2 1 12 12 C 1.34767 * 120.00209 * 144.94704 * 11 10 2 13 13 O 1.21598 * 120.00217 * 4.44489 * 12 11 10 14 14 C 1.47495 * 120.00095 * 184.44357 * 12 11 10 15 15 C 1.39685 * 120.20078 * 0.02562 * 14 12 11 16 16 C 1.37818 * 119.91895 * 180.23062 * 15 14 12 17 17 C 1.38581 * 120.32569 * 359.49116 * 16 15 14 18 18 C 1.38030 * 120.40135 * 0.50915 * 17 16 15 19 19 C 1.38828 * 120.07678 * 359.74675 * 18 17 16 20 20 O 1.35513 * 120.16099 * 180.02562 * 19 18 17 21 21 C 1.34819 * 117.00420 * 354.62328 * 20 19 18 22 22 H 1.08002 * 119.99581 * 5.04357 * 21 20 19 23 23 C 1.38692 * 120.00162 * 185.03997 * 21 20 19 24 24 N 1.31513 * 120.00373 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99852 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46843 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47008 * 120.00153 * 25 23 21 28 28 H 1.48499 * 109.47106 * 239.99951 * 25 23 21 29 29 H 1.09007 * 109.47015 * 270.27719 * 1 2 3 30 30 H 1.08990 * 109.47279 * 30.27983 * 1 2 3 31 31 H 1.08998 * 109.47308 * 150.28184 * 1 2 3 32 32 H 1.08001 * 120.03861 * 359.97438 * 3 2 1 33 33 H 0.96998 * 120.00379 * 0.02562 * 6 5 4 34 34 H 0.97003 * 120.00129 * 180.02562 * 6 5 4 35 35 H 1.08004 * 120.03063 * 180.02562 * 8 4 3 36 36 H 1.08001 * 119.96924 * 179.97438 * 9 8 4 37 37 H 0.96999 * 119.99681 * 324.94573 * 11 10 2 38 38 H 1.08006 * 120.03507 * 359.95009 * 15 14 12 39 39 H 1.08005 * 119.83465 * 179.72194 * 16 15 14 40 40 H 1.07998 * 119.79836 * 180.26339 * 17 16 15 41 41 H 1.07999 * 119.95551 * 179.77430 * 18 17 16 42 42 H 0.96999 * 120.00685 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1927 0.0000 4 6 3.5920 1.1919 -0.0058 5 6 4.3324 2.4685 -0.0125 6 7 5.6801 2.4660 -0.0186 7 8 3.7264 3.5227 -0.0125 8 6 4.2871 -0.0208 -0.0056 9 6 3.5938 -1.2098 -0.0002 10 6 2.2019 -1.2054 0.0059 11 7 1.5030 -2.4108 0.0113 12 6 1.9917 -3.4762 -0.6538 13 8 3.0807 -3.4105 -1.1908 14 6 1.2057 -4.7219 -0.7303 15 6 -0.0459 -4.8019 -0.1154 16 6 -0.7733 -5.9703 -0.1866 17 6 -0.2739 -7.0647 -0.8747 18 6 0.9613 -7.0003 -1.4872 19 6 1.7105 -5.8334 -1.4217 20 8 2.9233 -5.7682 -2.0228 21 6 3.3954 -6.9046 -2.5735 22 1 2.7786 -7.7909 -2.5952 23 6 4.6731 -6.9355 -3.1122 24 7 5.4243 -5.8564 -3.0853 25 14 5.3270 -8.5100 -3.8758 26 1 4.2940 -9.5726 -3.7801 27 1 5.6579 -8.2676 -5.3030 28 1 6.5489 -8.9415 -3.1507 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3634 -0.8925 -0.5094 32 1 1.6546 2.1281 -0.0004 33 1 6.1635 1.6250 -0.0189 34 1 6.1667 3.3051 -0.0226 35 1 5.3671 -0.0248 -0.0096 36 1 4.1302 -2.1471 -0.0005 37 1 0.6646 -2.4831 0.4938 38 1 -0.4411 -3.9506 0.4189 39 1 -1.7390 -6.0322 0.2932 40 1 -0.8530 -7.9747 -0.9286 41 1 1.3452 -7.8587 -2.0185 42 1 6.3178 -5.8778 -3.4624 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920003071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -67.402780 kcal Electronic energy + Delta-G solvation = -28378.511742 eV Core-core repulsion = 24288.269410 eV Total energy + Delta-G solvation = -4090.242332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94732 -41.01533 -40.27003 -38.92997 -38.05315 -35.93100 -34.85087 -34.33342 -33.43667 -32.49702 -30.69115 -30.52682 -27.88011 -27.38813 -25.76016 -24.19864 -23.28470 -23.05160 -21.60663 -21.11145 -19.91025 -19.56475 -18.96253 -18.25637 -18.02389 -17.64980 -16.48128 -16.44016 -16.16070 -16.02254 -15.83997 -15.76648 -15.61039 -15.37999 -15.18860 -14.89195 -14.54059 -14.45343 -14.29023 -14.22476 -13.63935 -13.55420 -13.07892 -12.95601 -12.81838 -12.69583 -12.56232 -12.38999 -12.28675 -12.10566 -11.49633 -11.35354 -11.23952 -10.84830 -10.74584 -10.64251 -9.90199 -9.83034 -9.19799 -9.01875 -8.45918 -6.16173 -0.33391 0.12253 0.33155 0.71515 1.33196 1.42814 1.51998 1.67216 1.97921 2.10458 2.14884 2.53929 2.79137 2.87848 3.20194 3.42533 3.68520 3.82653 3.85383 3.89437 4.04819 4.15971 4.25732 4.31654 4.42523 4.50568 4.60892 4.70956 4.83348 4.91501 4.95018 5.05596 5.10183 5.14521 5.20093 5.25943 5.34773 5.43560 5.47731 5.59205 5.69015 5.83722 5.92014 5.94848 6.14599 6.35071 6.46810 6.94010 7.24205 7.26990 7.77076 8.74167 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.003264 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.916449 B = 8576.767308 C =10902.362668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.120 4.120 3 C -0.045 4.045 4 C -0.171 4.171 5 C 0.569 3.431 6 N -0.832 5.832 7 O -0.585 6.585 8 C -0.065 4.065 9 C -0.153 4.153 10 C 0.173 3.827 11 N -0.657 5.657 12 C 0.549 3.451 13 O -0.536 6.536 14 C -0.246 4.246 15 C -0.029 4.029 16 C -0.199 4.199 17 C -0.037 4.037 18 C -0.257 4.257 19 C 0.153 3.847 20 O -0.186 6.186 21 C -0.426 4.426 22 H 0.107 0.893 23 C -0.018 4.018 24 N -0.901 5.901 25 Si 1.019 2.981 26 H -0.246 1.246 27 H -0.270 1.270 28 H -0.269 1.269 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.414 0.586 34 H 0.414 0.586 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.424 0.576 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.123 0.877 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 7.441 9.354 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.123 4.123 3 C -0.064 4.064 4 C -0.175 4.175 5 C 0.357 3.643 6 N -0.396 5.396 7 O -0.467 6.467 8 C -0.084 4.084 9 C -0.173 4.173 10 C 0.076 3.924 11 N -0.305 5.305 12 C 0.341 3.659 13 O -0.412 6.412 14 C -0.250 4.250 15 C -0.047 4.047 16 C -0.217 4.217 17 C -0.055 4.055 18 C -0.277 4.277 19 C 0.098 3.902 20 O -0.088 6.088 21 C -0.502 4.502 22 H 0.124 0.876 23 C -0.218 4.218 24 N -0.537 5.537 25 Si 0.837 3.163 26 H -0.169 1.169 27 H -0.195 1.195 28 H -0.194 1.194 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.246 0.754 34 H 0.246 0.754 35 H 0.168 0.832 36 H 0.134 0.866 37 H 0.265 0.735 38 H 0.179 0.821 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.141 0.859 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.221 8.221 8.844 15.193 hybrid contribution 1.161 -0.909 -0.488 1.553 sum -8.060 7.312 8.356 13.721 Atomic orbital electron populations 1.20849 0.87754 1.04136 1.04261 1.19906 0.98295 0.90036 1.04056 1.21090 0.92537 0.98042 0.94780 1.19881 0.94881 0.92484 1.10297 1.18205 0.83274 0.88179 0.74687 1.43612 1.05951 1.13933 1.76153 1.90772 1.69466 1.33845 1.52617 1.21274 1.00755 0.90262 0.96093 1.21273 0.93752 0.99266 1.03045 1.18003 0.91290 0.85760 0.97330 1.43174 1.26537 1.08625 1.52171 1.18677 0.85629 0.83862 0.77703 1.90941 1.21892 1.82629 1.45724 1.19087 1.00053 0.93045 1.12854 1.21324 0.89910 0.99383 0.94073 1.21186 1.02583 0.92777 1.05194 1.21468 0.92568 0.99613 0.91843 1.21309 0.98529 0.98228 1.09596 1.20029 0.86360 0.94154 0.89666 1.84155 1.28344 1.35285 1.61024 1.22049 1.00255 0.89564 1.38317 0.87587 1.26672 0.95031 1.02738 0.97362 1.70296 1.09852 1.30401 1.43105 0.84545 0.78720 0.75380 0.77608 1.16942 1.19508 1.19411 0.88425 0.89655 0.91160 0.83446 0.75409 0.75374 0.83224 0.86648 0.73505 0.82064 0.81706 0.82865 0.85884 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.46 71.24 0.67 -1.18 16 2 C -0.12 -2.97 5.89 -19.78 -0.12 -3.09 16 3 C -0.05 -1.15 9.23 22.50 0.21 -0.94 16 4 C -0.17 -4.57 5.88 -20.08 -0.12 -4.68 16 5 C 0.57 14.61 8.04 86.71 0.70 15.31 16 6 N -0.83 -14.17 8.82 -175.78 -1.55 -15.72 16 7 O -0.59 -18.79 17.17 -4.00 -0.07 -18.86 16 8 C -0.06 -1.79 9.53 22.50 0.21 -1.57 16 9 C -0.15 -5.29 8.67 22.35 0.19 -5.10 16 10 C 0.17 5.35 6.28 38.39 0.24 5.59 16 11 N -0.66 -19.96 4.66 -306.38 -1.43 -21.39 16 12 C 0.55 23.30 7.60 86.69 0.66 23.96 16 13 O -0.54 -29.28 12.55 16.87 0.21 -29.07 16 14 C -0.25 -9.91 5.89 -19.99 -0.12 -10.03 16 15 C -0.03 -0.78 9.53 22.52 0.21 -0.56 16 16 C -0.20 -4.79 10.02 22.25 0.22 -4.57 16 17 C -0.04 -1.06 10.03 22.30 0.22 -0.84 16 18 C -0.26 -10.40 9.16 22.36 0.20 -10.19 16 19 C 0.15 7.48 6.66 22.91 0.15 7.63 16 20 O -0.19 -11.29 7.84 0.87 0.01 -11.29 16 21 C -0.43 -24.82 9.49 67.93 0.64 -24.18 16 22 H 0.11 5.55 5.20 -2.91 -0.02 5.54 16 23 C -0.02 -1.05 5.49 84.85 0.47 -0.58 16 24 N -0.90 -56.80 13.67 21.62 0.30 -56.51 16 25 Si 1.02 42.85 29.55 68.60 2.03 44.88 16 26 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 29 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.07 1.13 7.17 -2.39 -0.02 1.12 16 32 H 0.15 3.41 7.64 -2.91 -0.02 3.39 16 33 H 0.41 5.33 6.85 -92.71 -0.63 4.69 16 34 H 0.41 5.49 8.93 -92.71 -0.83 4.67 16 35 H 0.15 3.20 6.39 -2.91 -0.02 3.18 16 36 H 0.12 4.89 6.18 -2.91 -0.02 4.87 16 37 H 0.42 8.90 5.88 -92.71 -0.55 8.35 16 38 H 0.16 2.72 6.41 -2.91 -0.02 2.70 16 39 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 41 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -89.11 359.38 3.29 -85.82 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.87 Total: 37.15 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 4.66 Total: -15.02 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -2.68 Total: -93.61 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: 0.15 Total: -59.21 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -89.11 3.29 -85.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920003071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.414 kcal (2) G-P(sol) polarization free energy of solvation -89.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds