Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48501 * 109.47230 * 265.38523 * 3 2 1 5 5 H 1.48505 * 109.47110 * 25.38599 * 3 2 1 6 6 H 1.48497 * 109.47276 * 145.38616 * 3 2 1 7 7 C 1.38807 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00093 * 343.43208 * 7 2 1 9 9 N 1.36936 * 119.99878 * 163.44267 * 7 2 1 10 10 C 1.48146 * 127.83898 * 160.88204 * 9 7 2 11 11 C 1.54388 * 104.62166 * 140.41014 * 10 9 7 12 12 H 1.09003 * 118.18295 * 244.20221 * 11 10 9 13 13 C 1.54288 * 104.96129 * 23.85954 * 11 10 9 14 14 H 1.08999 * 123.13511 * 221.64212 * 13 11 10 15 15 C 1.48148 * 127.83586 * 340.86708 * 9 7 2 16 16 C 1.52996 * 118.12575 * 87.18612 * 11 10 9 17 17 H 1.09003 * 117.40797 * 16.12280 * 16 11 10 18 18 N 1.46496 * 117.44338 * 160.81173 * 16 11 10 19 19 C 1.34776 * 120.00346 * 224.24228 * 18 16 11 20 20 O 1.21577 * 119.99484 * 359.97438 * 19 18 16 21 21 C 1.47716 * 120.00429 * 179.97438 * 19 18 16 22 22 C 1.39664 * 120.11912 * 359.97438 * 21 19 18 23 23 C 1.37815 * 119.88124 * 179.97438 * 22 21 19 24 24 C 1.38670 * 120.12147 * 0.02562 * 23 22 21 25 25 F 1.35106 * 119.88228 * 179.72447 * 24 23 22 26 26 C 1.38633 * 120.23898 * 359.97438 * 24 23 22 27 27 C 1.50698 * 119.94471 * 179.97438 * 26 24 23 28 28 F 1.39901 * 109.47352 * 119.99917 * 27 26 24 29 29 F 1.39902 * 109.47194 * 240.00003 * 27 26 24 30 30 C 1.37863 * 120.11940 * 0.02562 * 26 24 23 31 31 H 0.97003 * 120.00039 * 0.02562 * 1 2 3 32 32 H 1.09006 * 110.40500 * 259.19016 * 10 9 7 33 33 H 1.08999 * 110.40748 * 21.61686 * 10 9 7 34 34 H 1.08998 * 110.40373 * 100.81314 * 15 9 7 35 35 H 1.08992 * 110.40879 * 338.37835 * 15 9 7 36 36 H 0.97000 * 120.00008 * 44.23666 * 18 16 11 37 37 H 1.08004 * 120.05992 * 359.95787 * 22 21 19 38 38 H 1.08008 * 119.94333 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.46959 * 0.02562 * 27 26 24 40 40 H 1.07999 * 120.06233 * 179.97438 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5953 1.9902 -1.3955 5 1 1.4022 2.6789 0.6003 6 1 3.4956 1.4704 0.7953 7 6 2.0103 -1.2021 -0.0005 8 1 1.5040 -2.1181 0.2657 9 7 3.3371 -1.2265 -0.3385 10 6 4.3321 -2.2823 -0.0385 11 6 5.1892 -2.3851 -1.3184 12 1 5.1645 -3.3184 -1.8810 13 6 5.0382 -1.0142 -2.0101 14 1 4.9086 -0.9010 -3.0864 15 6 4.1030 -0.2031 -1.0874 16 6 6.3950 -1.4534 -1.4557 17 1 6.7524 -0.9589 -0.5525 18 7 7.4303 -1.8270 -2.4224 19 6 8.7320 -1.7334 -2.0858 20 8 9.0469 -1.3383 -0.9800 21 6 9.7760 -2.1107 -3.0604 22 6 9.4170 -2.5653 -4.3312 23 6 10.3951 -2.9155 -5.2368 24 6 11.7336 -2.8177 -4.8880 25 9 12.6883 -3.1676 -5.7776 26 6 12.0956 -2.3670 -3.6279 27 6 13.5522 -2.2638 -3.2557 28 9 13.8584 -0.9374 -2.9332 29 9 13.8107 -3.0837 -2.1519 30 6 11.1254 -2.0141 -2.7143 31 1 -0.4850 0.8401 -0.0004 32 1 4.9505 -1.9914 0.8107 33 1 3.8321 -3.2300 0.1614 34 1 4.6857 0.4124 -0.4021 35 1 3.4303 0.4177 -1.6790 36 1 7.1791 -2.1419 -3.3048 37 1 8.3748 -2.6425 -4.6037 38 1 10.1186 -3.2668 -6.2200 39 1 14.1660 -2.5835 -4.0978 40 1 11.4084 -1.6635 -1.7328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959927941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -82.209182 kcal Electronic energy + Delta-G solvation = -28170.567818 eV Core-core repulsion = 23537.826692 eV Total energy + Delta-G solvation = -4632.741126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88844 -49.39253 -47.46193 -40.70568 -39.36339 -38.27046 -34.90701 -33.30002 -32.47993 -31.55701 -30.67063 -27.87990 -26.92326 -25.95610 -24.45667 -22.94997 -21.92221 -20.90118 -20.66910 -19.73752 -18.86901 -18.29973 -17.85428 -17.75226 -17.08074 -16.99034 -16.67435 -16.35392 -16.03171 -15.27688 -15.10937 -14.88600 -14.70099 -14.37200 -14.04574 -13.82128 -13.75587 -13.68714 -13.61423 -13.37555 -13.02256 -12.91935 -12.57522 -12.30102 -12.21172 -11.81784 -11.49099 -11.27359 -11.11516 -10.82557 -10.34653 -10.23174 -10.11624 -10.00350 -9.64513 -9.52760 -9.39810 -8.86798 -8.70791 -7.18052 -5.97913 -3.32737 -0.06259 0.35673 2.16502 2.67669 2.99963 3.09442 3.28289 3.30821 3.45157 3.46264 3.56383 3.79905 3.98978 4.07740 4.25634 4.29518 4.46064 4.48847 4.57010 4.74183 4.84784 5.01013 5.02462 5.15546 5.22777 5.27474 5.34136 5.45982 5.47736 5.63075 5.66730 5.88450 5.92978 6.15855 6.41010 6.44843 6.48590 6.57533 6.71005 7.21884 7.53304 7.90709 8.26734 8.72404 9.60581 10.13685 11.18152 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.002107 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.569764 B =13283.670951 C =13603.408046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.237 4.237 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.157 3.843 11 C -0.174 4.174 12 H 0.110 0.890 13 C -0.174 4.174 14 H 0.111 0.889 15 C 0.129 3.871 16 C 0.097 3.903 17 H 0.136 0.864 18 N -0.690 5.690 19 C 0.562 3.438 20 O -0.526 6.526 21 C -0.140 4.140 22 C -0.036 4.036 23 C -0.159 4.159 24 C 0.157 3.843 25 F -0.127 7.127 26 C -0.215 4.215 27 C 0.317 3.683 28 F -0.193 7.193 29 F -0.192 7.192 30 C 0.008 3.992 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.560 -7.172 -13.916 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.719 3.281 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.363 4.363 8 H 0.113 0.887 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.195 4.195 12 H 0.128 0.872 13 C -0.195 4.195 14 H 0.129 0.871 15 C 0.003 3.997 16 C -0.009 4.009 17 H 0.154 0.846 18 N -0.339 5.339 19 C 0.348 3.652 20 O -0.402 6.402 21 C -0.143 4.143 22 C -0.055 4.055 23 C -0.178 4.178 24 C 0.137 3.863 25 F -0.105 7.105 26 C -0.217 4.217 27 C 0.263 3.737 28 F -0.174 7.174 29 F -0.173 7.173 30 C -0.010 4.010 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.141 0.859 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 26.509 -6.787 -13.033 30.309 hybrid contribution 0.405 0.721 -0.768 1.128 sum 26.914 -6.067 -13.801 30.848 Atomic orbital electron populations 1.69771 1.05429 1.26641 1.53867 1.25020 0.95299 0.97531 1.00093 0.86914 0.79382 0.84362 0.77487 1.21385 1.22972 1.19526 1.18659 0.80926 0.95115 1.41635 0.88656 1.45539 1.06157 1.19255 1.61866 1.21134 0.89962 0.93763 0.92031 1.24416 0.98979 0.94392 1.01700 0.87167 1.24299 0.95825 0.99525 0.99881 0.87072 1.21696 0.92768 0.92360 0.92899 1.21896 0.82316 1.02103 0.94565 0.84646 1.45236 1.04918 1.66559 1.17221 1.17953 0.82211 0.78128 0.86879 1.90831 1.81830 1.45740 1.21820 1.20028 0.93953 1.05192 0.95162 1.21375 1.00238 0.92516 0.91347 1.21101 0.90164 1.04332 1.02153 1.17562 0.86296 0.96519 0.85930 1.91545 1.63009 1.89056 1.66891 1.20336 0.96342 1.09839 0.95175 1.20142 0.92346 0.74046 0.87115 1.93053 1.93980 1.36290 1.94038 1.93053 1.94931 1.72256 1.57109 1.21020 0.90387 0.90497 0.99143 0.92590 0.94717 0.91839 0.94448 0.90882 0.76540 0.83711 0.82966 0.85851 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.88 13.97 55.49 0.78 -27.11 16 2 C 0.02 0.54 5.49 -17.43 -0.10 0.45 16 3 Si 0.89 22.34 24.49 -169.99 -4.16 18.17 16 4 H -0.29 -6.88 6.35 56.52 0.36 -6.52 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.68 6.33 56.52 0.36 -6.32 16 7 C -0.24 -6.59 10.78 -15.06 -0.16 -6.76 16 8 H 0.10 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.60 -14.26 3.19 -168.86 -0.54 -14.80 16 10 C 0.16 3.00 7.04 -2.41 -0.02 2.99 16 11 C -0.17 -2.67 7.06 -89.22 -0.63 -3.30 16 12 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.17 -2.79 7.06 -89.21 -0.63 -3.42 16 14 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.13 2.70 4.49 -2.40 -0.01 2.69 16 16 C 0.10 1.39 5.98 -67.93 -0.41 0.98 16 17 H 0.14 2.22 7.40 -51.93 -0.38 1.84 16 18 N -0.69 -7.53 5.51 -54.79 -0.30 -7.84 16 19 C 0.56 6.80 7.77 -12.39 -0.10 6.71 16 20 O -0.53 -8.49 15.91 5.30 0.08 -8.40 16 21 C -0.14 -1.26 5.87 -104.97 -0.62 -1.88 16 22 C -0.04 -0.21 9.54 -39.20 -0.37 -0.59 16 23 C -0.16 -0.84 10.01 -39.58 -0.40 -1.23 16 24 C 0.16 1.04 7.25 -39.28 -0.28 0.76 16 25 F -0.13 -0.81 16.18 2.25 0.04 -0.77 16 26 C -0.22 -1.69 5.37 -104.61 -0.56 -2.26 16 27 C 0.32 2.36 5.43 36.00 0.20 2.55 16 28 F -0.19 -1.77 17.25 2.25 0.04 -1.73 16 29 F -0.19 -1.76 17.25 2.25 0.04 -1.72 16 30 C 0.01 0.08 9.13 -39.20 -0.36 -0.28 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.80 6.79 -51.93 -0.35 0.45 16 35 H 0.07 1.65 5.06 -51.93 -0.26 1.39 16 36 H 0.40 3.00 6.85 -40.82 -0.28 2.72 16 37 H 0.15 0.47 6.40 -52.48 -0.34 0.13 16 38 H 0.15 0.42 8.06 -52.48 -0.42 0.00 16 39 H 0.12 0.57 7.12 -51.93 -0.37 0.20 16 40 H 0.15 1.57 7.65 -52.49 -0.40 1.17 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -33.55 346.07 -7.40 -40.95 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.14 Total: 0.61 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -4.44 Total: -2.58 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.07 Total: -49.74 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.11 Total: -4.23 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.16 Total: 18.17 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.55 -7.40 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959927941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.258 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds