Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48501 * 109.47230 * 265.38523 * 3 2 1 5 5 H 1.48505 * 109.47110 * 25.38599 * 3 2 1 6 6 H 1.48497 * 109.47276 * 145.38616 * 3 2 1 7 7 C 1.38807 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00093 * 343.43208 * 7 2 1 9 9 N 1.36936 * 119.99878 * 163.44267 * 7 2 1 10 10 C 1.48146 * 127.83898 * 160.88204 * 9 7 2 11 11 C 1.54388 * 104.62166 * 140.41014 * 10 9 7 12 12 H 1.09003 * 118.18295 * 244.20221 * 11 10 9 13 13 C 1.54288 * 104.96129 * 23.85954 * 11 10 9 14 14 H 1.08999 * 123.13511 * 221.64212 * 13 11 10 15 15 C 1.48148 * 127.83586 * 340.86708 * 9 7 2 16 16 C 1.52996 * 118.12575 * 87.18612 * 11 10 9 17 17 H 1.09003 * 117.40797 * 16.12280 * 16 11 10 18 18 N 1.46496 * 117.44338 * 160.81173 * 16 11 10 19 19 C 1.34776 * 120.00346 * 224.24228 * 18 16 11 20 20 O 1.21577 * 119.99484 * 359.97438 * 19 18 16 21 21 C 1.47716 * 120.00429 * 179.97438 * 19 18 16 22 22 C 1.39664 * 120.11912 * 359.97438 * 21 19 18 23 23 C 1.37815 * 119.88124 * 179.97438 * 22 21 19 24 24 C 1.38670 * 120.12147 * 0.02562 * 23 22 21 25 25 F 1.35106 * 119.88228 * 179.72447 * 24 23 22 26 26 C 1.38633 * 120.23898 * 359.97438 * 24 23 22 27 27 C 1.50698 * 119.94471 * 179.97438 * 26 24 23 28 28 F 1.39901 * 109.47352 * 119.99917 * 27 26 24 29 29 F 1.39902 * 109.47194 * 240.00003 * 27 26 24 30 30 C 1.37863 * 120.11940 * 0.02562 * 26 24 23 31 31 H 0.97003 * 120.00039 * 0.02562 * 1 2 3 32 32 H 1.09006 * 110.40500 * 259.19016 * 10 9 7 33 33 H 1.08999 * 110.40748 * 21.61686 * 10 9 7 34 34 H 1.08998 * 110.40373 * 100.81314 * 15 9 7 35 35 H 1.08992 * 110.40879 * 338.37835 * 15 9 7 36 36 H 0.97000 * 120.00008 * 44.23666 * 18 16 11 37 37 H 1.08004 * 120.05992 * 359.95787 * 22 21 19 38 38 H 1.08008 * 119.94333 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.46959 * 0.02562 * 27 26 24 40 40 H 1.07999 * 120.06233 * 179.97438 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5953 1.9902 -1.3955 5 1 1.4022 2.6789 0.6003 6 1 3.4956 1.4704 0.7953 7 6 2.0103 -1.2021 -0.0005 8 1 1.5040 -2.1181 0.2657 9 7 3.3371 -1.2265 -0.3385 10 6 4.3321 -2.2823 -0.0385 11 6 5.1892 -2.3851 -1.3184 12 1 5.1645 -3.3184 -1.8810 13 6 5.0382 -1.0142 -2.0101 14 1 4.9086 -0.9010 -3.0864 15 6 4.1030 -0.2031 -1.0874 16 6 6.3950 -1.4534 -1.4557 17 1 6.7524 -0.9589 -0.5525 18 7 7.4303 -1.8270 -2.4224 19 6 8.7320 -1.7334 -2.0858 20 8 9.0469 -1.3383 -0.9800 21 6 9.7760 -2.1107 -3.0604 22 6 9.4170 -2.5653 -4.3312 23 6 10.3951 -2.9155 -5.2368 24 6 11.7336 -2.8177 -4.8880 25 9 12.6883 -3.1676 -5.7776 26 6 12.0956 -2.3670 -3.6279 27 6 13.5522 -2.2638 -3.2557 28 9 13.8584 -0.9374 -2.9332 29 9 13.8107 -3.0837 -2.1519 30 6 11.1254 -2.0141 -2.7143 31 1 -0.4850 0.8401 -0.0004 32 1 4.9505 -1.9914 0.8107 33 1 3.8321 -3.2300 0.1614 34 1 4.6857 0.4124 -0.4021 35 1 3.4303 0.4177 -1.6790 36 1 7.1791 -2.1419 -3.3048 37 1 8.3748 -2.6425 -4.6037 38 1 10.1186 -3.2668 -6.2200 39 1 14.1660 -2.5835 -4.0978 40 1 11.4084 -1.6635 -1.7328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959927941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -104.298889 kcal Electronic energy + Delta-G solvation = -28171.525700 eV Core-core repulsion = 23537.826692 eV Total energy + Delta-G solvation = -4633.699008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.40898 -49.99904 -48.12014 -41.60289 -40.48449 -39.22441 -36.28916 -34.65407 -33.48946 -32.66240 -31.83303 -29.44016 -27.86589 -27.29896 -25.36818 -23.50147 -23.36886 -22.22915 -21.67340 -21.14530 -19.53250 -18.96079 -18.91883 -18.46838 -18.38862 -17.88559 -17.63887 -17.13661 -16.85252 -16.60479 -16.08258 -15.93824 -15.52873 -15.32880 -15.22511 -15.04467 -14.72984 -14.52335 -14.49388 -14.30125 -14.21191 -14.03119 -13.77324 -13.56191 -13.32570 -13.15425 -12.80716 -12.68674 -12.42804 -12.11845 -12.02588 -11.79275 -11.54519 -11.30944 -10.95707 -10.81635 -10.50842 -10.15530 -9.78863 -9.15938 -8.18244 -5.48973 -0.63921 -0.17856 1.26486 1.39024 1.42969 1.46449 1.73460 2.36115 2.38801 2.45743 2.77304 2.79141 3.03821 3.04903 3.23985 3.27389 3.46058 3.65455 3.66976 3.75157 3.85918 3.86434 3.97553 4.07392 4.25741 4.30344 4.36574 4.62346 4.64490 4.70095 4.73086 4.75507 4.87514 4.94718 4.95056 5.13635 5.22470 5.38588 5.46647 5.57788 6.09188 6.37094 6.65757 7.03723 7.46757 8.10662 9.01674 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.002107 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.569764 B =13283.670951 C =13603.408046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.040 4.040 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.310 1.310 6 H -0.267 1.267 7 C -0.225 4.225 8 H 0.066 0.934 9 N -0.626 5.626 10 C 0.148 3.852 11 C -0.161 4.161 12 H 0.143 0.857 13 C -0.169 4.169 14 H 0.143 0.857 15 C 0.120 3.880 16 C 0.117 3.883 17 H 0.113 0.887 18 N -0.673 5.673 19 C 0.563 3.437 20 O -0.575 6.575 21 C -0.154 4.154 22 C -0.020 4.020 23 C -0.146 4.146 24 C 0.162 3.838 25 F -0.123 7.123 26 C -0.224 4.224 27 C 0.311 3.689 28 F -0.206 7.206 29 F -0.206 7.206 30 C -0.008 4.008 31 H 0.263 0.737 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.421 0.579 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.156 0.844 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.621 -8.083 -17.307 34.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.234 4.234 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.238 1.238 6 H -0.192 1.192 7 C -0.353 4.353 8 H 0.084 0.916 9 N -0.351 5.351 10 C 0.023 3.977 11 C -0.182 4.182 12 H 0.160 0.840 13 C -0.190 4.190 14 H 0.161 0.839 15 C -0.005 4.005 16 C 0.010 3.990 17 H 0.131 0.869 18 N -0.323 5.323 19 C 0.352 3.648 20 O -0.455 6.455 21 C -0.157 4.157 22 C -0.038 4.038 23 C -0.164 4.164 24 C 0.142 3.858 25 F -0.101 7.101 26 C -0.226 4.226 27 C 0.258 3.742 28 F -0.187 7.187 29 F -0.187 7.187 30 C -0.028 4.028 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.260 0.740 37 H 0.197 0.803 38 H 0.205 0.795 39 H 0.173 0.827 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 28.626 -7.728 -16.478 33.922 hybrid contribution -0.145 0.889 0.290 0.947 sum 28.481 -6.839 -16.188 33.466 Atomic orbital electron populations 1.69898 1.07010 1.27235 1.56629 1.25650 0.95939 1.00748 1.01078 0.85935 0.77836 0.80147 0.78378 1.19309 1.23845 1.19230 1.18596 0.82894 0.93985 1.39836 0.91632 1.45650 1.05506 1.21094 1.62854 1.21301 0.89648 0.92545 0.94174 1.24291 0.98799 0.95566 0.99576 0.83969 1.24122 0.95981 0.98476 1.00416 0.83939 1.21701 0.93120 0.92359 0.93330 1.21450 0.82391 1.00796 0.94379 0.86907 1.44965 1.03789 1.66071 1.17505 1.18413 0.82796 0.76938 0.86702 1.90815 1.82556 1.47998 1.24148 1.19782 0.92558 1.07352 0.96006 1.21693 1.02162 0.90436 0.89526 1.21489 0.88994 1.02672 1.03290 1.17681 0.87123 0.95717 0.85263 1.91562 1.63089 1.88874 1.66559 1.20336 0.96036 1.10458 0.95743 1.20550 0.93024 0.73239 0.87387 1.93021 1.94104 1.37408 1.94203 1.93022 1.95041 1.72580 1.58057 1.20906 0.91303 0.91725 0.98829 0.92812 0.94825 0.91708 0.95056 0.92409 0.74003 0.80311 0.79472 0.82727 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.42 13.97 21.65 0.30 -60.12 16 2 C -0.04 -2.36 5.49 84.86 0.47 -1.89 16 3 Si 0.95 46.89 24.49 68.60 1.68 48.57 16 4 H -0.27 -12.22 6.35 99.48 0.63 -11.58 16 5 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.27 -12.89 6.33 99.48 0.63 -12.26 16 7 C -0.22 -12.80 10.78 84.03 0.91 -11.89 16 8 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 9 N -0.63 -29.38 3.19 -688.15 -2.20 -31.58 16 10 C 0.15 5.52 7.04 86.53 0.61 6.13 16 11 C -0.16 -4.46 7.06 -9.89 -0.07 -4.53 16 12 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 13 C -0.17 -4.88 7.06 -9.88 -0.07 -4.95 16 14 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 15 C 0.12 4.88 4.49 86.54 0.39 5.26 16 16 C 0.12 3.04 5.98 44.99 0.27 3.31 16 17 H 0.11 3.58 7.40 -2.39 -0.02 3.56 16 18 N -0.67 -12.29 5.51 -445.53 -2.46 -14.75 16 19 C 0.56 12.61 7.77 86.75 0.67 13.29 16 20 O -0.58 -18.62 15.91 -3.96 -0.06 -18.68 16 21 C -0.15 -2.42 5.87 -20.09 -0.12 -2.54 16 22 C -0.02 -0.14 9.54 22.51 0.21 0.07 16 23 C -0.15 -0.81 10.01 22.27 0.22 -0.58 16 24 C 0.16 1.60 7.25 22.47 0.16 1.76 16 25 F -0.12 -1.12 16.18 44.97 0.73 -0.39 16 26 C -0.22 -3.17 5.37 -19.86 -0.11 -3.28 16 27 C 0.31 4.33 5.43 71.24 0.39 4.72 16 28 F -0.21 -3.76 17.25 44.97 0.78 -2.99 16 29 F -0.21 -3.74 17.25 44.97 0.78 -2.96 16 30 C -0.01 -0.15 9.13 22.52 0.21 0.05 16 31 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.03 1.32 6.79 -2.39 -0.02 1.30 16 35 H 0.06 2.52 5.06 -2.39 -0.01 2.51 16 36 H 0.42 4.06 6.85 -92.71 -0.64 3.43 16 37 H 0.18 -0.01 6.40 -2.91 -0.02 -0.03 16 38 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16 39 H 0.16 1.11 7.12 -2.39 -0.02 1.09 16 40 H 0.13 2.89 7.65 -2.91 -0.02 2.87 16 Total: -1.00 -77.33 346.07 4.02 -73.31 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 0.33 Total: 4.67 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 4.14 Total: 4.92 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.35 Total: -106.44 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 2.28 Total: -6.34 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.68 Total: 48.57 kcal Total: -77.33 4.02 -73.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959927941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.986 kcal (2) G-P(sol) polarization free energy of solvation -77.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds