Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46510 * 240.00060 * 3 2 1 5 5 H 1.48496 * 109.47218 * 120.00078 * 3 2 1 6 6 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 155.62352 * 7 2 1 9 9 N 1.36937 * 119.99845 * 335.62295 * 7 2 1 10 10 C 1.48145 * 127.83797 * 158.92211 * 9 7 2 11 11 C 1.54389 * 104.62096 * 140.41350 * 10 9 7 12 12 H 1.08992 * 117.61509 * 242.76804 * 11 10 9 13 13 C 1.54290 * 104.95854 * 23.86373 * 11 10 9 14 14 H 1.08993 * 121.81592 * 222.17776 * 13 11 10 15 15 C 1.48153 * 127.83615 * 338.59902 * 9 7 2 16 16 C 1.52998 * 59.72049 * 114.13954 * 13 11 10 17 17 H 1.09006 * 117.44587 * 252.35072 * 16 13 11 18 18 N 1.46504 * 117.40654 * 107.66397 * 16 13 11 19 19 C 1.34773 * 120.00066 * 135.77418 * 18 16 13 20 20 O 1.21559 * 119.99891 * 359.97438 * 19 18 16 21 21 C 1.47843 * 120.00034 * 179.97438 * 19 18 16 22 22 C 1.39579 * 120.14401 * 359.72625 * 21 19 18 23 23 C 1.37961 * 119.85157 * 179.74485 * 22 21 19 24 24 C 1.38354 * 120.14398 * 0.53000 * 23 22 21 25 25 C 1.50707 * 119.85383 * 179.71917 * 24 23 22 26 26 F 1.39897 * 109.47057 * 270.01759 * 25 24 23 27 27 F 1.39904 * 109.46759 * 30.02441 * 25 24 23 28 28 F 1.39901 * 109.46829 * 150.01788 * 25 24 23 29 29 C 1.38363 * 120.29556 * 359.74098 * 24 23 22 30 30 C 1.37960 * 120.14177 * 359.97438 * 29 24 23 31 31 H 0.96998 * 119.99845 * 174.47055 * 1 2 3 32 32 H 1.09007 * 110.40219 * 259.19721 * 10 9 7 33 33 H 1.08992 * 110.40513 * 21.62262 * 10 9 7 34 34 H 1.09000 * 110.40870 * 338.36725 * 15 9 7 35 35 H 1.09000 * 110.40347 * 100.80438 * 15 9 7 36 36 H 0.96992 * 120.00001 * 315.77097 * 18 16 13 37 37 H 1.07999 * 120.07286 * 359.97438 * 22 21 19 38 38 H 1.07998 * 119.92679 * 180.27266 * 23 22 21 39 39 H 1.07997 * 119.92960 * 180.02562 * 29 24 23 40 40 H 1.08008 * 120.06950 * 180.02562 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0181 -1.2440 -0.3855 9 7 1.4172 -2.3350 0.4905 10 6 1.7765 -3.7440 0.2075 11 6 1.6235 -4.4653 1.5639 12 1 2.5165 -4.9095 2.0034 13 6 0.6307 -3.5985 2.3661 14 1 0.7826 -3.3798 3.4230 15 6 0.2748 -2.4294 1.4291 16 6 0.2454 -5.0155 1.9367 17 1 -0.4885 -5.1162 1.1370 18 7 0.1883 -6.0438 2.9787 19 6 -0.8430 -6.9108 3.0141 20 8 -1.7260 -6.8392 2.1817 21 6 -0.9003 -7.9488 4.0652 22 6 0.1149 -8.0374 5.0190 23 6 0.0527 -9.0050 6.0004 24 6 -1.0074 -9.8934 6.0339 25 6 -1.0656 -10.9519 7.1051 26 9 -0.4150 -12.1061 6.6559 27 9 -0.4344 -10.4805 8.2612 28 9 -2.4016 -11.2516 7.3924 29 6 -2.0142 -9.8147 5.0880 30 6 -1.9670 -8.8481 4.1048 31 1 -0.4850 -0.8361 -0.0809 32 1 1.0942 -4.1697 -0.5284 33 1 2.8059 -3.8104 -0.1444 34 1 0.1728 -1.5052 1.9979 35 1 -0.6455 -2.6467 0.8869 36 1 0.8927 -6.1007 3.6430 37 1 0.9454 -7.3475 4.9911 38 1 0.8353 -9.0718 6.7416 39 1 -2.8391 -10.5110 5.1200 40 1 -2.7537 -8.7875 3.3673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962366487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -97.655779 kcal Electronic energy + Delta-G solvation = -27946.211325 eV Core-core repulsion = 23312.800384 eV Total energy + Delta-G solvation = -4633.410941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.63105 -48.14501 -48.09066 -40.69759 -39.35776 -38.28966 -34.87491 -33.31972 -32.38735 -31.66059 -30.16825 -27.51228 -27.09524 -25.43442 -23.53786 -23.45149 -21.87399 -20.81731 -20.38427 -19.53773 -19.10087 -18.94747 -18.83092 -17.95101 -17.50906 -16.71213 -15.72413 -15.38507 -15.14847 -15.03726 -14.94312 -14.76722 -14.55367 -14.37546 -14.24174 -14.17485 -14.02179 -13.91119 -13.66209 -13.53422 -13.28793 -13.19358 -12.45688 -12.18425 -12.04435 -11.82959 -11.62015 -10.92844 -10.74313 -10.63517 -10.35116 -10.24197 -10.06613 -9.83069 -9.70041 -9.69859 -9.33485 -8.70237 -8.49767 -7.05267 -6.17848 -3.24423 -0.03481 0.66330 2.13655 2.28542 2.76082 3.19291 3.20132 3.46577 3.49801 3.50452 3.68280 3.92374 4.07662 4.15676 4.18697 4.30923 4.52382 4.60437 4.75314 4.88253 4.97079 5.11931 5.20613 5.28230 5.36893 5.45908 5.53086 5.63882 5.67127 5.69957 5.85043 5.96355 6.05966 6.29304 6.51594 6.53921 6.66506 6.90287 6.93106 7.27191 7.68542 7.94697 8.39406 8.91859 9.72826 10.34825 11.18044 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.001823 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.948080 B =15356.555068 C =15591.694571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.025 4.025 3 Si 1.070 2.930 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.154 3.846 11 C -0.178 4.178 12 H 0.107 0.893 13 C -0.174 4.174 14 H 0.106 0.894 15 C 0.165 3.835 16 C 0.097 3.903 17 H 0.135 0.865 18 N -0.689 5.689 19 C 0.556 3.444 20 O -0.525 6.525 21 C -0.095 4.095 22 C -0.089 4.089 23 C -0.076 4.076 24 C -0.165 4.165 25 C 0.508 3.492 26 F -0.175 7.175 27 F -0.175 7.175 28 F -0.175 7.175 29 C -0.076 4.076 30 C -0.061 4.061 31 H 0.269 0.731 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.399 0.601 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 -23.037 15.381 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.199 4.199 12 H 0.125 0.875 13 C -0.196 4.196 14 H 0.124 0.876 15 C 0.039 3.961 16 C -0.009 4.009 17 H 0.152 0.848 18 N -0.338 5.338 19 C 0.343 3.657 20 O -0.401 6.401 21 C -0.098 4.098 22 C -0.107 4.107 23 C -0.094 4.094 24 C -0.166 4.166 25 C 0.454 3.546 26 F -0.156 7.156 27 F -0.157 7.157 28 F -0.156 7.156 29 C -0.094 4.094 30 C -0.080 4.080 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.234 0.766 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.580 -21.193 14.781 25.886 hybrid contribution 0.712 -1.999 0.642 2.217 sum -0.869 -23.192 15.423 27.866 Atomic orbital electron populations 1.70768 1.06545 1.30378 1.47891 1.25906 0.96602 1.01301 0.98909 0.83450 0.74681 0.75740 0.76199 1.21886 1.22020 1.20964 1.19726 0.97241 0.86783 1.42295 0.91679 1.45256 1.37271 1.00175 1.49323 1.21131 0.98791 0.86058 0.91216 1.24324 0.92306 1.02523 1.00712 0.87484 1.24418 1.03926 0.91505 0.99716 0.87585 1.21048 0.90834 0.94308 0.89904 1.21883 0.99546 0.86728 0.92756 0.84775 1.45275 1.24816 1.32004 1.31690 1.18125 0.82060 0.81064 0.84501 1.90819 1.37620 1.72106 1.39587 1.20292 0.96293 0.96996 0.96232 1.21342 0.98072 0.97911 0.93411 1.20892 0.96838 0.93363 0.98327 1.20198 0.99762 0.98518 0.98167 1.18285 0.73824 0.81225 0.81267 1.93244 1.81437 1.51891 1.89019 1.93208 1.82329 1.88256 1.51873 1.93208 1.34443 1.93911 1.94082 1.20973 0.97417 0.98239 0.92815 1.21328 0.97335 0.92028 0.97296 0.91969 0.95524 0.92651 0.91289 0.95268 0.76550 0.84251 0.83893 0.83810 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.56 12.82 55.49 0.71 -26.85 16 2 C -0.03 -0.71 5.12 -17.43 -0.09 -0.80 16 3 Si 1.07 25.00 29.98 -169.99 -5.10 19.90 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.33 -9.30 10.19 -15.06 -0.15 -9.45 16 8 H 0.07 1.80 7.94 -52.49 -0.42 1.38 16 9 N -0.60 -14.95 3.23 -169.10 -0.55 -15.50 16 10 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 11 C -0.18 -2.92 7.06 -89.22 -0.63 -3.55 16 12 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 13 C -0.17 -3.07 7.04 -89.43 -0.63 -3.70 16 14 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 15 C 0.17 3.79 4.98 -2.62 -0.01 3.77 16 16 C 0.10 1.50 5.98 -67.93 -0.41 1.09 16 17 H 0.13 2.38 7.40 -51.93 -0.38 2.00 16 18 N -0.69 -8.23 5.51 -54.75 -0.30 -8.53 16 19 C 0.56 7.12 7.77 -12.33 -0.10 7.03 16 20 O -0.52 -8.75 15.91 5.31 0.08 -8.66 16 21 C -0.09 -0.91 5.87 -104.97 -0.62 -1.52 16 22 C -0.09 -0.63 9.54 -39.18 -0.37 -1.00 16 23 C -0.08 -0.50 9.38 -39.64 -0.37 -0.87 16 24 C -0.16 -1.21 5.46 -104.53 -0.57 -1.78 16 25 C 0.51 3.82 3.36 36.01 0.12 3.94 16 26 F -0.17 -1.42 17.30 2.25 0.04 -1.38 16 27 F -0.18 -1.36 16.45 2.25 0.04 -1.33 16 28 F -0.18 -1.38 16.45 2.25 0.04 -1.34 16 29 C -0.08 -0.55 9.38 -39.64 -0.37 -0.92 16 30 C -0.06 -0.53 9.60 -39.19 -0.38 -0.91 16 31 H 0.27 8.14 6.41 -40.82 -0.26 7.88 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.74 7.47 -51.93 -0.39 1.35 16 35 H 0.03 0.70 7.66 -51.93 -0.40 0.30 16 36 H 0.40 3.48 6.86 -40.82 -0.28 3.20 16 37 H 0.14 0.66 6.41 -52.49 -0.34 0.32 16 38 H 0.14 0.66 7.59 -52.49 -0.40 0.26 16 39 H 0.14 0.77 7.59 -52.49 -0.40 0.37 16 40 H 0.15 1.29 7.65 -52.48 -0.40 0.89 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -32.94 352.30 -8.47 -41.41 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.15 Total: 2.51 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -4.59 Total: -5.53 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.14 Total: -50.88 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.11 Total: -4.05 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.94 -8.47 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962366487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.249 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds