Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46510 * 240.00060 * 3 2 1 5 5 H 1.48496 * 109.47218 * 120.00078 * 3 2 1 6 6 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 155.62352 * 7 2 1 9 9 N 1.36937 * 119.99845 * 335.62295 * 7 2 1 10 10 C 1.48145 * 127.83797 * 158.92211 * 9 7 2 11 11 C 1.54389 * 104.62096 * 140.41350 * 10 9 7 12 12 H 1.08992 * 117.61509 * 242.76804 * 11 10 9 13 13 C 1.54290 * 104.95854 * 23.86373 * 11 10 9 14 14 H 1.08993 * 121.81592 * 222.17776 * 13 11 10 15 15 C 1.48153 * 127.83615 * 338.59902 * 9 7 2 16 16 C 1.52998 * 59.72049 * 114.13954 * 13 11 10 17 17 H 1.09006 * 117.44587 * 252.35072 * 16 13 11 18 18 N 1.46504 * 117.40654 * 107.66397 * 16 13 11 19 19 C 1.34773 * 120.00066 * 135.77418 * 18 16 13 20 20 O 1.21559 * 119.99891 * 359.97438 * 19 18 16 21 21 C 1.47843 * 120.00034 * 179.97438 * 19 18 16 22 22 C 1.39579 * 120.14401 * 359.72625 * 21 19 18 23 23 C 1.37961 * 119.85157 * 179.74485 * 22 21 19 24 24 C 1.38354 * 120.14398 * 0.53000 * 23 22 21 25 25 C 1.50707 * 119.85383 * 179.71917 * 24 23 22 26 26 F 1.39897 * 109.47057 * 270.01759 * 25 24 23 27 27 F 1.39904 * 109.46759 * 30.02441 * 25 24 23 28 28 F 1.39901 * 109.46829 * 150.01788 * 25 24 23 29 29 C 1.38363 * 120.29556 * 359.74098 * 24 23 22 30 30 C 1.37960 * 120.14177 * 359.97438 * 29 24 23 31 31 H 0.96998 * 119.99845 * 174.47055 * 1 2 3 32 32 H 1.09007 * 110.40219 * 259.19721 * 10 9 7 33 33 H 1.08992 * 110.40513 * 21.62262 * 10 9 7 34 34 H 1.09000 * 110.40870 * 338.36725 * 15 9 7 35 35 H 1.09000 * 110.40347 * 100.80438 * 15 9 7 36 36 H 0.96992 * 120.00001 * 315.77097 * 18 16 13 37 37 H 1.07999 * 120.07286 * 359.97438 * 22 21 19 38 38 H 1.07998 * 119.92679 * 180.27266 * 23 22 21 39 39 H 1.07997 * 119.92960 * 180.02562 * 29 24 23 40 40 H 1.08008 * 120.06950 * 180.02562 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0181 -1.2440 -0.3855 9 7 1.4172 -2.3350 0.4905 10 6 1.7765 -3.7440 0.2075 11 6 1.6235 -4.4653 1.5639 12 1 2.5165 -4.9095 2.0034 13 6 0.6307 -3.5985 2.3661 14 1 0.7826 -3.3798 3.4230 15 6 0.2748 -2.4294 1.4291 16 6 0.2454 -5.0155 1.9367 17 1 -0.4885 -5.1162 1.1370 18 7 0.1883 -6.0438 2.9787 19 6 -0.8430 -6.9108 3.0141 20 8 -1.7260 -6.8392 2.1817 21 6 -0.9003 -7.9488 4.0652 22 6 0.1149 -8.0374 5.0190 23 6 0.0527 -9.0050 6.0004 24 6 -1.0074 -9.8934 6.0339 25 6 -1.0656 -10.9519 7.1051 26 9 -0.4150 -12.1061 6.6559 27 9 -0.4344 -10.4805 8.2612 28 9 -2.4016 -11.2516 7.3924 29 6 -2.0142 -9.8147 5.0880 30 6 -1.9670 -8.8481 4.1048 31 1 -0.4850 -0.8361 -0.0809 32 1 1.0942 -4.1697 -0.5284 33 1 2.8059 -3.8104 -0.1444 34 1 0.1728 -1.5052 1.9979 35 1 -0.6455 -2.6467 0.8869 36 1 0.8927 -6.1007 3.6430 37 1 0.9454 -7.3475 4.9911 38 1 0.8353 -9.0718 6.7416 39 1 -2.8391 -10.5110 5.1200 40 1 -2.7537 -8.7875 3.3673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962366487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -117.436282 kcal Electronic energy + Delta-G solvation = -27947.069072 eV Core-core repulsion = 23312.800384 eV Total energy + Delta-G solvation = -4634.268688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.22180 -48.73472 -48.68901 -41.64461 -40.53241 -39.38368 -36.40812 -34.73999 -33.32083 -32.35470 -31.78541 -29.21695 -27.98368 -27.14542 -24.52008 -24.03476 -23.23045 -22.07303 -21.65665 -21.04736 -19.71556 -19.53868 -19.53234 -19.42608 -18.85281 -17.87097 -16.63901 -16.18500 -16.11543 -15.95670 -15.84198 -15.60431 -15.56173 -15.43494 -15.29934 -15.13891 -15.00388 -14.94248 -14.83620 -14.58048 -14.38201 -13.96552 -13.87420 -13.63950 -13.33961 -12.80119 -12.65096 -12.55385 -12.38189 -12.34097 -11.93636 -11.85792 -11.64925 -11.33040 -10.88592 -10.62881 -10.50144 -10.24549 -9.87015 -9.11319 -8.39244 -5.42249 -0.69408 0.11929 1.44310 1.55088 1.57840 1.65365 1.72766 1.85191 2.42616 2.61031 2.62458 2.74661 2.93219 3.15684 3.34414 3.38116 3.47264 3.64865 3.66804 3.71142 3.75591 3.99156 4.04862 4.17420 4.25500 4.29453 4.42413 4.64573 4.68750 4.78050 4.85458 4.90364 4.96820 4.97366 5.09113 5.14271 5.19131 5.34877 5.49759 5.61619 6.24056 6.32550 6.78428 6.98908 7.62217 8.29127 8.96545 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.001823 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.948080 B =15356.555068 C =15591.694571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.082 4.082 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.293 1.293 7 C -0.339 4.339 8 H 0.066 0.934 9 N -0.622 5.622 10 C 0.145 3.855 11 C -0.154 4.154 12 H 0.148 0.852 13 C -0.177 4.177 14 H 0.132 0.868 15 C 0.169 3.831 16 C 0.119 3.881 17 H 0.108 0.892 18 N -0.673 5.673 19 C 0.557 3.443 20 O -0.572 6.572 21 C -0.111 4.111 22 C -0.077 4.077 23 C -0.073 4.073 24 C -0.165 4.165 25 C 0.512 3.488 26 F -0.178 7.178 27 F -0.175 7.175 28 F -0.178 7.178 29 C -0.075 4.075 30 C -0.070 4.070 31 H 0.252 0.748 32 H 0.018 0.982 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.004 0.996 36 H 0.420 0.580 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 -24.565 17.574 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.277 4.277 3 Si 0.946 3.054 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.219 1.219 7 C -0.467 4.467 8 H 0.084 0.916 9 N -0.347 5.347 10 C 0.020 3.980 11 C -0.174 4.174 12 H 0.166 0.834 13 C -0.199 4.199 14 H 0.149 0.851 15 C 0.043 3.957 16 C 0.011 3.989 17 H 0.126 0.874 18 N -0.323 5.323 19 C 0.346 3.654 20 O -0.452 6.452 21 C -0.114 4.114 22 C -0.095 4.095 23 C -0.091 4.091 24 C -0.167 4.167 25 C 0.458 3.542 26 F -0.159 7.159 27 F -0.157 7.157 28 F -0.160 7.160 29 C -0.093 4.093 30 C -0.089 4.089 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.259 0.741 37 H 0.185 0.815 38 H 0.186 0.814 39 H 0.177 0.823 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.669 -22.781 17.009 28.438 hybrid contribution -0.016 -1.659 -0.052 1.660 sum 0.652 -24.440 16.958 29.754 Atomic orbital electron populations 1.70894 1.07687 1.29357 1.51051 1.27400 0.96639 1.04967 0.98723 0.82760 0.73686 0.71379 0.77541 1.19793 1.20183 1.21918 1.20044 0.97257 0.88018 1.41416 0.91617 1.45554 1.37514 1.01416 1.50233 1.21290 0.98895 0.84253 0.93565 1.24202 0.93990 1.01522 0.97729 0.83446 1.24150 1.05404 0.90472 0.99843 0.85072 1.20837 0.89602 0.95185 0.90114 1.21386 0.98371 0.86351 0.92762 0.87408 1.45017 1.25444 1.30705 1.31164 1.18637 0.81123 0.81196 0.84453 1.90805 1.39354 1.73388 1.41619 1.20070 0.98004 0.96798 0.96497 1.21581 0.97730 0.98077 0.92149 1.21191 0.96962 0.92484 0.98420 1.20330 1.00009 0.98511 0.97860 1.18262 0.73626 0.81098 0.81246 1.93240 1.81497 1.52152 1.89057 1.93209 1.82312 1.88226 1.51919 1.93205 1.34699 1.93937 1.94111 1.21088 0.97986 0.98008 0.92247 1.21343 0.97259 0.92543 0.97732 0.93769 0.96466 0.91744 0.94511 0.97820 0.74084 0.81468 0.81447 0.82302 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 12.82 21.65 0.28 -59.04 16 2 C -0.08 -4.73 5.12 84.86 0.43 -4.30 16 3 Si 1.12 50.78 29.98 68.60 2.06 52.83 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.34 -19.21 10.19 84.03 0.86 -18.35 16 8 H 0.07 3.63 7.94 -2.91 -0.02 3.61 16 9 N -0.62 -31.82 3.23 -688.91 -2.22 -34.05 16 10 C 0.15 5.89 7.04 86.53 0.61 6.50 16 11 C -0.15 -4.69 7.06 -9.88 -0.07 -4.76 16 12 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 13 C -0.18 -6.07 7.04 -10.02 -0.07 -6.14 16 14 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 15 C 0.17 8.03 4.98 86.40 0.43 8.46 16 16 C 0.12 3.53 5.98 44.99 0.27 3.80 16 17 H 0.11 3.91 7.40 -2.38 -0.02 3.89 16 18 N -0.67 -14.35 5.51 -445.40 -2.46 -16.81 16 19 C 0.56 13.59 7.77 86.79 0.67 14.26 16 20 O -0.57 -19.35 15.91 -3.90 -0.06 -19.41 16 21 C -0.11 -1.89 5.87 -20.09 -0.12 -2.01 16 22 C -0.08 -0.80 9.54 22.53 0.21 -0.59 16 23 C -0.07 -0.69 9.38 22.23 0.21 -0.48 16 24 C -0.17 -1.99 5.46 -19.80 -0.11 -2.09 16 25 C 0.51 6.46 3.36 71.24 0.24 6.70 16 26 F -0.18 -2.51 17.30 44.97 0.78 -1.73 16 27 F -0.18 -2.26 16.45 44.97 0.74 -1.52 16 28 F -0.18 -2.47 16.45 44.97 0.74 -1.73 16 29 C -0.08 -0.95 9.38 22.23 0.21 -0.74 16 30 C -0.07 -1.14 9.60 22.53 0.22 -0.93 16 31 H 0.25 16.18 6.41 -92.71 -0.59 15.59 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.94 7.47 -2.39 -0.02 1.92 16 35 H 0.00 0.21 7.66 -2.39 -0.02 0.19 16 36 H 0.42 5.49 6.86 -92.71 -0.64 4.85 16 37 H 0.17 0.72 6.41 -2.91 -0.02 0.71 16 38 H 0.17 0.78 7.59 -2.91 -0.02 0.76 16 39 H 0.16 1.43 7.59 -2.91 -0.02 1.41 16 40 H 0.14 2.50 7.65 -2.91 -0.02 2.47 16 Total: -1.00 -75.21 352.30 4.50 -70.71 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.65 Total: 11.40 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 4.00 Total: -0.66 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.40 Total: -109.89 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.41 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 2.26 Total: -4.98 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.83 kcal Total: -75.21 4.50 -70.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962366487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.723 kcal (2) G-P(sol) polarization free energy of solvation -75.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds