Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48504 * 109.47153 * 240.00208 * 3 2 1 5 5 H 1.48499 * 109.47517 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47067 * 120.00381 * 3 2 1 7 7 C 1.38811 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99859 * 170.56472 * 7 2 1 9 9 N 1.36936 * 120.00100 * 350.57406 * 7 2 1 10 10 C 1.48144 * 127.83965 * 164.33655 * 9 7 2 11 11 C 1.57692 * 104.67931 * 139.76926 * 10 9 7 12 12 H 1.08998 * 120.32559 * 244.64753 * 11 10 9 13 13 C 1.53001 * 116.10862 * 87.30542 * 11 10 9 14 14 H 1.08998 * 117.40688 * 16.95372 * 13 11 10 15 15 C 1.53005 * 117.44181 * 161.64399 * 13 11 10 16 16 N 1.46497 * 109.47116 * 244.24051 * 15 13 11 17 17 C 1.34771 * 120.00095 * 179.97438 * 16 15 13 18 18 O 1.21581 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.47579 * 120.00103 * 180.02562 * 17 16 15 20 20 C 1.39742 * 120.12993 * 0.20770 * 19 17 16 21 21 C 1.37760 * 119.93910 * 180.27736 * 20 19 17 22 22 C 1.38704 * 120.21726 * 359.76988 * 21 20 19 23 23 F 1.35100 * 119.86798 * 179.97438 * 22 21 20 24 24 C 1.38665 * 120.26820 * 359.97438 * 22 21 20 25 25 F 1.35093 * 119.97792 * 179.97438 * 24 22 21 26 26 C 1.38391 * 120.04866 * 359.97438 * 24 22 21 27 27 F 1.35106 * 120.10251 * 180.02562 * 26 24 22 28 28 C 1.53007 * 60.55729 * 269.29171 * 13 11 10 29 29 H 1.08994 * 119.53760 * 248.23544 * 28 13 11 30 30 C 1.48151 * 127.83877 * 344.32982 * 9 7 2 31 31 H 0.96996 * 120.00234 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.40918 * 259.19676 * 10 9 7 33 33 H 1.09004 * 110.41106 * 21.50655 * 10 9 7 34 34 H 1.08998 * 109.46988 * 124.23874 * 15 13 11 35 35 H 1.08997 * 109.46645 * 4.24059 * 15 13 11 36 36 H 0.97007 * 119.99622 * 0.02562 * 16 15 13 37 37 H 1.07995 * 120.02813 * 0.02562 * 20 19 17 38 38 H 1.07999 * 119.88593 * 179.74308 * 21 20 19 39 39 H 1.09001 * 110.40458 * 100.80208 * 30 9 7 40 40 H 1.08998 * 110.40269 * 338.37265 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0793 -1.2085 -0.1528 9 7 1.3394 -2.3800 0.1953 10 6 1.8184 -3.7547 -0.0791 11 6 1.2961 -4.6102 1.1383 12 1 2.0013 -5.0726 1.8289 13 6 -0.1130 -5.1898 0.9985 14 1 -0.5439 -5.2254 -0.0020 15 6 -0.4932 -6.3493 1.9216 16 7 -0.7427 -7.5500 1.1201 17 6 -1.0943 -8.7023 1.7241 18 8 -1.2041 -8.7456 2.9341 19 6 -1.3451 -9.9120 0.9167 20 6 -1.2145 -9.8667 -0.4739 21 6 -1.4550 -10.9968 -1.2242 22 6 -1.8221 -12.1817 -0.6036 23 9 -2.0569 -13.2855 -1.3463 24 6 -1.9492 -12.2379 0.7761 25 9 -2.3075 -13.3949 1.3744 26 6 -1.7091 -11.1096 1.5407 27 9 -1.8321 -11.1633 2.8851 28 6 0.0736 -3.8121 1.6373 29 1 -0.1318 -3.6800 2.6995 30 6 -0.0300 -2.5685 0.7283 31 1 -0.4850 0.8400 0.0004 32 1 1.4044 -4.1211 -1.0184 33 1 2.9078 -3.7787 -0.1099 34 1 -1.3940 -6.0903 2.4781 35 1 0.3222 -6.5409 2.6190 36 1 -0.6540 -7.5157 0.1547 37 1 -0.9291 -8.9457 -0.9602 38 1 -1.3579 -10.9597 -2.2991 39 1 -0.7327 -2.7496 -0.0850 40 1 -0.3351 -1.6978 1.3087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978638919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -74.825014 kcal Electronic energy + Delta-G solvation = -27950.902734 eV Core-core repulsion = 23318.481810 eV Total energy + Delta-G solvation = -4632.420924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -50.26231 -49.65598 -48.90802 -40.49335 -38.97260 -38.36616 -35.19619 -33.50410 -31.69474 -31.24501 -30.71590 -27.54211 -27.03274 -25.29381 -24.28193 -23.71196 -21.26752 -21.21468 -20.14053 -19.35798 -19.05906 -18.49898 -18.27952 -17.31690 -17.09204 -16.83506 -16.42470 -16.00788 -15.92261 -15.52732 -15.22230 -15.11406 -15.01738 -14.81987 -14.53579 -14.15119 -13.77924 -13.63506 -13.24324 -12.90945 -12.76040 -12.68994 -12.45082 -12.39731 -11.94585 -11.29661 -11.15697 -10.85904 -10.70415 -10.40687 -10.32149 -10.19279 -9.78878 -9.65142 -9.57349 -9.50962 -9.23770 -9.07951 -8.68370 -6.92784 -5.85094 -3.19545 -0.26212 0.10618 2.04634 2.54281 2.84049 2.95537 3.35358 3.40467 3.41416 3.51921 3.61754 3.77206 3.90378 4.04541 4.12396 4.41866 4.70322 4.80106 4.93754 5.05466 5.12079 5.19966 5.21400 5.32011 5.37563 5.42657 5.70036 5.71147 5.80436 5.86407 5.89205 6.14554 6.16951 6.46362 6.58372 6.61655 6.83356 7.15881 7.29366 7.47168 7.66494 7.84303 8.15521 9.05678 9.68639 10.45122 11.29217 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.001867 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.520270 B =14993.991241 C =15590.799260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.156 3.844 11 C -0.172 4.172 12 H 0.108 0.892 13 C -0.155 4.155 14 H 0.104 0.896 15 C 0.154 3.846 16 N -0.712 5.712 17 C 0.556 3.444 18 O -0.520 6.520 19 C -0.153 4.153 20 C -0.036 4.036 21 C -0.141 4.141 22 C 0.123 3.877 23 F -0.114 7.114 24 C 0.022 3.978 25 F -0.113 7.113 26 C 0.158 3.842 27 F -0.093 7.093 28 C -0.161 4.161 29 H 0.102 0.898 30 C 0.183 3.817 31 H 0.255 0.745 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.402 0.598 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.024 0.976 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -23.875 -2.718 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.029 3.971 11 C -0.192 4.192 12 H 0.126 0.874 13 C -0.175 4.175 14 H 0.122 0.878 15 C 0.031 3.969 16 N -0.364 5.364 17 C 0.341 3.659 18 O -0.396 6.396 19 C -0.157 4.157 20 C -0.055 4.055 21 C -0.160 4.160 22 C 0.102 3.898 23 F -0.092 7.092 24 C 0.001 3.999 25 F -0.091 7.091 26 C 0.136 3.864 27 F -0.070 7.070 28 C -0.181 4.181 29 H 0.121 0.879 30 C 0.058 3.942 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.237 0.763 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.042 0.958 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.351 -23.648 -1.809 24.113 hybrid contribution 0.285 0.290 -0.212 0.458 sum -4.067 -23.358 -2.021 23.796 Atomic orbital electron populations 1.69881 1.05074 1.25634 1.55546 1.24897 0.95648 0.98022 1.01637 0.86189 0.78570 0.82886 0.78045 1.20963 1.21519 1.21035 1.18940 0.90845 0.82381 1.43562 0.90620 1.45137 1.13721 0.99967 1.72893 1.21715 0.97154 0.85882 0.92345 1.24739 0.89663 1.02214 1.02546 0.87440 1.22549 1.00707 0.94060 1.00135 0.87822 1.20974 1.01433 0.81686 0.92763 1.45895 1.69524 1.09848 1.11160 1.17682 0.78171 0.82673 0.87333 1.90889 1.50787 1.84611 1.13348 1.20091 1.07295 0.93689 0.94667 1.21213 0.94096 0.99097 0.91064 1.21123 1.02187 0.90236 1.02459 1.17601 1.00793 0.84848 0.86522 1.91600 1.91431 1.50611 1.75565 1.17439 1.09318 0.83305 0.89865 1.91590 1.89399 1.44889 1.83257 1.17317 0.98748 0.91802 0.78515 1.91680 1.92112 1.96494 1.26741 1.24193 1.02171 0.91517 1.00258 0.87946 1.21083 0.86910 0.92760 0.93469 0.93452 0.95565 0.93304 0.90686 0.91003 0.76260 0.82418 0.81939 0.95802 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.88 55.49 0.60 -25.52 16 2 C 0.00 -0.13 5.39 -17.43 -0.09 -0.23 16 3 Si 0.91 21.44 29.56 -169.99 -5.03 16.41 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.20 10.35 -15.06 -0.16 -6.36 16 8 H 0.08 1.98 7.85 -52.48 -0.41 1.56 16 9 N -0.59 -14.60 3.38 -166.73 -0.56 -15.16 16 10 C 0.16 3.03 7.09 -0.57 0.00 3.03 16 11 C -0.17 -2.76 7.03 -87.38 -0.61 -3.37 16 12 H 0.11 1.60 8.12 -51.93 -0.42 1.18 16 13 C -0.16 -2.11 5.34 -90.61 -0.48 -2.59 16 14 H 0.10 1.36 8.04 -51.93 -0.42 0.94 16 15 C 0.15 1.83 5.95 -4.04 -0.02 1.81 16 16 N -0.71 -6.86 5.51 -61.34 -0.34 -7.20 16 17 C 0.56 6.35 7.76 -12.45 -0.10 6.25 16 18 O -0.52 -8.13 15.33 5.29 0.08 -8.05 16 19 C -0.15 -1.33 5.88 -104.92 -0.62 -1.95 16 20 C -0.04 -0.18 9.53 -39.19 -0.37 -0.55 16 21 C -0.14 -0.63 10.00 -39.58 -0.40 -1.03 16 22 C 0.12 0.86 7.31 -39.25 -0.29 0.57 16 23 F -0.11 -0.88 17.17 2.25 0.04 -0.84 16 24 C 0.02 0.20 7.30 -39.37 -0.29 -0.09 16 25 F -0.11 -1.17 17.09 2.25 0.04 -1.13 16 26 C 0.16 1.60 7.29 -38.92 -0.28 1.32 16 27 F -0.09 -1.19 15.46 2.25 0.03 -1.16 16 28 C -0.16 -2.83 6.77 -89.21 -0.60 -3.43 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 C 0.18 4.19 5.70 -2.41 -0.01 4.17 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 36 H 0.40 2.64 6.43 -40.82 -0.26 2.37 16 37 H 0.16 0.33 6.40 -52.49 -0.34 -0.01 16 38 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 2.32 6.53 -51.93 -0.34 1.98 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -32.47 352.79 -8.42 -40.89 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.27 Total: -1.12 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.33 Total: -2.44 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.30 Total: -47.88 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.08 Total: -8.05 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.11 Total: -3.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.47 -8.42 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978638919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.937 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds