Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48504 * 109.47153 * 240.00208 * 3 2 1 5 5 H 1.48499 * 109.47517 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47067 * 120.00381 * 3 2 1 7 7 C 1.38811 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99859 * 170.56472 * 7 2 1 9 9 N 1.36936 * 120.00100 * 350.57406 * 7 2 1 10 10 C 1.48144 * 127.83965 * 164.33655 * 9 7 2 11 11 C 1.57692 * 104.67931 * 139.76926 * 10 9 7 12 12 H 1.08998 * 120.32559 * 244.64753 * 11 10 9 13 13 C 1.53001 * 116.10862 * 87.30542 * 11 10 9 14 14 H 1.08998 * 117.40688 * 16.95372 * 13 11 10 15 15 C 1.53005 * 117.44181 * 161.64399 * 13 11 10 16 16 N 1.46497 * 109.47116 * 244.24051 * 15 13 11 17 17 C 1.34771 * 120.00095 * 179.97438 * 16 15 13 18 18 O 1.21581 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.47579 * 120.00103 * 180.02562 * 17 16 15 20 20 C 1.39742 * 120.12993 * 0.20770 * 19 17 16 21 21 C 1.37760 * 119.93910 * 180.27736 * 20 19 17 22 22 C 1.38704 * 120.21726 * 359.76988 * 21 20 19 23 23 F 1.35100 * 119.86798 * 179.97438 * 22 21 20 24 24 C 1.38665 * 120.26820 * 359.97438 * 22 21 20 25 25 F 1.35093 * 119.97792 * 179.97438 * 24 22 21 26 26 C 1.38391 * 120.04866 * 359.97438 * 24 22 21 27 27 F 1.35106 * 120.10251 * 180.02562 * 26 24 22 28 28 C 1.53007 * 60.55729 * 269.29171 * 13 11 10 29 29 H 1.08994 * 119.53760 * 248.23544 * 28 13 11 30 30 C 1.48151 * 127.83877 * 344.32982 * 9 7 2 31 31 H 0.96996 * 120.00234 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.40918 * 259.19676 * 10 9 7 33 33 H 1.09004 * 110.41106 * 21.50655 * 10 9 7 34 34 H 1.08998 * 109.46988 * 124.23874 * 15 13 11 35 35 H 1.08997 * 109.46645 * 4.24059 * 15 13 11 36 36 H 0.97007 * 119.99622 * 0.02562 * 16 15 13 37 37 H 1.07995 * 120.02813 * 0.02562 * 20 19 17 38 38 H 1.07999 * 119.88593 * 179.74308 * 21 20 19 39 39 H 1.09001 * 110.40458 * 100.80208 * 30 9 7 40 40 H 1.08998 * 110.40269 * 338.37265 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0793 -1.2085 -0.1528 9 7 1.3394 -2.3800 0.1953 10 6 1.8184 -3.7547 -0.0791 11 6 1.2961 -4.6102 1.1383 12 1 2.0013 -5.0726 1.8289 13 6 -0.1130 -5.1898 0.9985 14 1 -0.5439 -5.2254 -0.0020 15 6 -0.4932 -6.3493 1.9216 16 7 -0.7427 -7.5500 1.1201 17 6 -1.0943 -8.7023 1.7241 18 8 -1.2041 -8.7456 2.9341 19 6 -1.3451 -9.9120 0.9167 20 6 -1.2145 -9.8667 -0.4739 21 6 -1.4550 -10.9968 -1.2242 22 6 -1.8221 -12.1817 -0.6036 23 9 -2.0569 -13.2855 -1.3463 24 6 -1.9492 -12.2379 0.7761 25 9 -2.3075 -13.3949 1.3744 26 6 -1.7091 -11.1096 1.5407 27 9 -1.8321 -11.1633 2.8851 28 6 0.0736 -3.8121 1.6373 29 1 -0.1318 -3.6800 2.6995 30 6 -0.0300 -2.5685 0.7283 31 1 -0.4850 0.8400 0.0004 32 1 1.4044 -4.1211 -1.0184 33 1 2.9078 -3.7787 -0.1099 34 1 -1.3940 -6.0903 2.4781 35 1 0.3222 -6.5409 2.6190 36 1 -0.6540 -7.5157 0.1547 37 1 -0.9291 -8.9457 -0.9602 38 1 -1.3579 -10.9597 -2.2991 39 1 -0.7327 -2.7496 -0.0850 40 1 -0.3351 -1.6978 1.3087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978638919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -94.707223 kcal Electronic energy + Delta-G solvation = -27951.764891 eV Core-core repulsion = 23318.481810 eV Total energy + Delta-G solvation = -4633.283082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -50.93971 -50.34393 -49.62582 -41.31857 -40.24266 -39.19917 -36.41129 -35.06743 -32.90440 -32.00163 -31.78424 -28.93471 -28.59267 -26.79464 -25.10474 -24.31960 -22.83022 -22.12327 -21.38767 -20.81842 -19.77601 -19.15133 -19.01834 -18.76856 -17.99371 -17.82353 -17.21009 -16.84848 -16.73086 -16.60586 -16.33339 -16.05328 -15.99886 -15.71814 -15.57312 -15.27966 -15.13001 -14.61664 -14.47954 -14.28669 -14.18841 -13.39248 -13.32507 -13.15225 -13.03036 -12.99809 -12.82855 -12.67524 -12.31369 -11.95372 -11.85986 -11.72869 -11.34839 -10.91412 -10.69727 -10.53276 -10.29924 -10.15916 -9.99394 -8.87413 -7.90154 -5.25403 -0.85676 -0.44892 1.39782 1.47657 1.50502 1.56863 1.77420 2.18863 2.25159 2.49354 2.77041 2.94509 2.99363 3.23117 3.28553 3.34407 3.54552 3.65525 3.74926 3.89782 4.14928 4.24240 4.31101 4.33146 4.39146 4.61350 4.63109 4.67553 4.69769 4.75309 4.77493 4.97376 5.07444 5.17115 5.35317 5.37714 5.42959 5.47964 5.57514 5.70316 6.20971 6.39638 7.03776 7.05132 7.71614 8.49408 9.23380 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.001867 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.520270 B =14993.991241 C =15590.799260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.977 3.023 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.149 3.851 11 C -0.158 4.158 12 H 0.128 0.872 13 C -0.109 4.109 14 H 0.119 0.881 15 C 0.162 3.838 16 N -0.696 5.696 17 C 0.557 3.443 18 O -0.570 6.570 19 C -0.160 4.160 20 C -0.013 4.013 21 C -0.115 4.115 22 C 0.125 3.875 23 F -0.118 7.118 24 C 0.005 3.995 25 F -0.129 7.129 26 C 0.132 3.868 27 F -0.119 7.119 28 C -0.182 4.182 29 H 0.108 0.892 30 C 0.189 3.811 31 H 0.249 0.751 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.420 0.580 37 H 0.198 0.802 38 H 0.205 0.795 39 H 0.006 0.994 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -25.001 -4.881 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.024 3.976 11 C -0.177 4.177 12 H 0.145 0.855 13 C -0.128 4.128 14 H 0.137 0.863 15 C 0.038 3.962 16 N -0.349 5.349 17 C 0.344 3.656 18 O -0.450 6.450 19 C -0.165 4.165 20 C -0.031 4.031 21 C -0.134 4.134 22 C 0.105 3.895 23 F -0.096 7.096 24 C -0.016 4.016 25 F -0.107 7.107 26 C 0.110 3.890 27 F -0.098 7.098 28 C -0.202 4.202 29 H 0.126 0.874 30 C 0.063 3.937 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.259 0.741 37 H 0.215 0.785 38 H 0.222 0.778 39 H 0.024 0.976 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.366 -24.810 -4.016 25.358 hybrid contribution -0.005 0.578 0.368 0.686 sum -3.371 -24.232 -3.647 24.736 Atomic orbital electron populations 1.70074 1.06429 1.25743 1.57161 1.25702 0.96477 1.01198 1.02277 0.85182 0.77247 0.78779 0.78301 1.19941 1.22109 1.20549 1.19320 0.91360 0.83778 1.42393 0.90246 1.45458 1.14304 1.01280 1.73553 1.21899 0.97637 0.83979 0.94103 1.24658 0.90394 1.01721 1.00971 0.85457 1.22433 0.98079 0.91800 1.00448 0.86337 1.20745 1.01215 0.81774 0.92434 1.45649 1.68716 1.08623 1.11947 1.18016 0.77182 0.83495 0.86907 1.90873 1.53008 1.85414 1.15679 1.19958 1.08652 0.91878 0.95992 1.21638 0.91700 1.00708 0.89072 1.21569 0.99193 0.88377 1.04213 1.17823 1.00505 0.85638 0.85572 1.91597 1.91456 1.51140 1.75380 1.17635 1.10504 0.82632 0.90796 1.91540 1.89762 1.45674 1.83758 1.17626 1.00670 0.93040 0.77657 1.91603 1.92677 1.96711 1.28767 1.23861 1.05113 0.91426 0.99810 0.87424 1.20808 0.86093 0.93626 0.93124 0.94177 0.94472 0.92834 0.91130 0.91178 0.74061 0.78520 0.77841 0.97565 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.62 10.88 21.65 0.24 -55.38 16 2 C -0.06 -3.49 5.39 84.86 0.46 -3.03 16 3 Si 0.98 44.55 29.56 68.60 2.03 46.57 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.24 -13.05 10.35 84.03 0.87 -12.18 16 8 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 9 N -0.62 -30.58 3.38 -681.41 -2.30 -32.88 16 10 C 0.15 5.52 7.09 87.73 0.62 6.14 16 11 C -0.16 -4.63 7.03 -8.69 -0.06 -4.69 16 12 H 0.13 3.31 8.12 -2.39 -0.02 3.29 16 13 C -0.11 -2.60 5.34 -10.79 -0.06 -2.66 16 14 H 0.12 2.59 8.04 -2.39 -0.02 2.57 16 15 C 0.16 3.38 5.95 86.38 0.51 3.89 16 16 N -0.70 -10.96 5.51 -466.24 -2.57 -13.53 16 17 C 0.56 11.68 7.76 86.71 0.67 12.35 16 18 O -0.57 -17.75 15.33 -3.97 -0.06 -17.81 16 19 C -0.16 -2.44 5.88 -20.06 -0.12 -2.56 16 20 C -0.01 -0.07 9.53 22.52 0.21 0.15 16 21 C -0.12 -0.46 10.00 22.27 0.22 -0.24 16 22 C 0.13 1.43 7.31 22.48 0.16 1.59 16 23 F -0.12 -1.54 17.17 44.97 0.77 -0.77 16 24 C 0.01 0.10 7.30 22.41 0.16 0.26 16 25 F -0.13 -2.76 17.09 44.97 0.77 -1.99 16 26 C 0.13 2.64 7.29 22.70 0.17 2.81 16 27 F -0.12 -3.26 15.46 44.97 0.70 -2.57 16 28 C -0.18 -6.18 6.77 -9.88 -0.07 -6.25 16 29 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 30 C 0.19 8.77 5.70 86.53 0.49 9.27 16 31 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.57 7.94 -2.39 -0.02 1.56 16 36 H 0.42 3.32 6.43 -92.70 -0.60 2.73 16 37 H 0.20 -0.54 6.40 -2.91 -0.02 -0.56 16 38 H 0.20 -0.73 8.06 -2.91 -0.02 -0.75 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.05 2.60 6.53 -2.39 -0.02 2.59 16 Total: -1.00 -75.95 352.79 4.34 -71.61 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 0.52 Total: 1.87 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.26 Total: 4.87 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -4.63 Total: -101.79 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.06 Total: -17.81 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 2.24 Total: -5.32 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.95 4.34 -71.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978638919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.098 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds