Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48500 * 109.47047 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.46990 * 30.00342 * 3 2 1 6 6 H 1.48498 * 109.47166 * 150.00504 * 3 2 1 7 7 C 1.38814 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00019 * 189.09316 * 7 2 1 9 9 N 1.36937 * 119.99901 * 9.09531 * 7 2 1 10 10 C 1.48143 * 127.83829 * 15.59027 * 9 7 2 11 11 C 1.54386 * 104.61643 * 140.39832 * 10 9 7 12 12 H 1.08999 * 118.18493 * 244.20526 * 11 10 9 13 13 C 1.53003 * 118.12390 * 87.19006 * 11 10 9 14 14 H 1.09000 * 117.44006 * 16.06759 * 13 11 10 15 15 C 1.53002 * 117.44470 * 160.80865 * 13 11 10 16 16 N 1.46502 * 109.47205 * 185.00089 * 15 13 11 17 17 C 1.34777 * 119.99711 * 180.02562 * 16 15 13 18 18 O 1.21581 * 119.99991 * 0.02562 * 17 16 15 19 19 C 1.47576 * 119.99558 * 180.02562 * 17 16 15 20 20 C 1.39753 * 120.13273 * 0.02562 * 19 17 16 21 21 C 1.37912 * 119.87693 * 180.02562 * 20 19 17 22 22 F 1.35107 * 119.92907 * 179.97438 * 21 20 19 23 23 C 1.38944 * 120.14453 * 359.97438 * 21 20 19 24 24 F 1.35103 * 119.86635 * 179.97438 * 23 21 20 25 25 C 1.38448 * 120.26795 * 0.02562 * 23 21 20 26 26 C 1.38207 * 120.12218 * 0.25106 * 25 23 21 27 27 F 1.35098 * 120.07821 * 179.74217 * 26 25 23 28 28 C 1.52999 * 60.55781 * 268.46134 * 13 11 10 29 29 H 1.09000 * 119.53929 * 248.23540 * 28 13 11 30 30 C 1.48147 * 127.83602 * 195.57050 * 9 7 2 31 31 H 0.97003 * 120.00510 * 359.97438 * 1 2 3 32 32 H 1.09006 * 110.40968 * 21.61380 * 10 9 7 33 33 H 1.09003 * 110.41006 * 259.17977 * 10 9 7 34 34 H 1.09003 * 109.46489 * 64.99996 * 15 13 11 35 35 H 1.08995 * 109.47099 * 305.00829 * 15 13 11 36 36 H 0.97000 * 119.99586 * 0.02562 * 16 15 13 37 37 H 1.07999 * 120.06100 * 0.02562 * 20 19 17 38 38 H 1.08003 * 119.93851 * 179.97438 * 25 23 21 39 39 H 1.09001 * 110.40418 * 100.81607 * 30 9 7 40 40 H 1.08997 * 110.50787 * 338.44222 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0340 -2.5705 -0.7126 11 6 0.0642 -3.8159 -1.6197 12 1 -0.1225 -3.6919 -2.6864 13 6 -0.1179 -5.1924 -0.9771 14 1 -0.5673 -5.2280 0.0153 15 6 -0.4667 -6.3613 -1.9008 16 7 -0.7170 -7.5606 -1.0975 17 6 -1.0433 -8.7203 -1.7017 18 8 -1.1296 -8.7712 -2.9134 19 6 -1.2959 -9.9283 -0.8925 20 6 -1.1980 -9.8727 0.5005 21 6 -1.4346 -11.0049 1.2515 22 9 -1.3398 -10.9525 2.5982 23 6 -1.7704 -12.1994 0.6262 24 9 -2.0006 -13.3053 1.3674 25 6 -1.8691 -12.2613 -0.7533 26 6 -1.6287 -11.1348 -1.5171 27 9 -1.7201 -11.1974 -2.8635 28 6 1.2865 -4.5966 -1.0933 29 1 2.0102 -5.0541 -1.7680 30 6 1.8197 -3.7546 0.0856 31 1 -0.4851 0.8400 0.0004 32 1 -0.3431 -1.7011 -1.2928 33 1 -0.7317 -2.7503 0.1054 34 1 0.3641 -6.5467 -2.5816 35 1 -1.3597 -6.1161 -2.4756 36 1 -0.6477 -7.5200 -0.1308 37 1 -0.9375 -8.9449 0.9879 38 1 -2.1300 -13.1927 -1.2339 39 1 1.4116 -4.1191 1.0283 40 1 2.9091 -3.7801 0.1090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978640327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -95.626421 kcal Electronic energy + Delta-G solvation = -27972.452497 eV Core-core repulsion = 23339.129556 eV Total energy + Delta-G solvation = -4633.322941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.72215 -50.16805 -49.78124 -41.31832 -40.35955 -39.18547 -36.42643 -35.09463 -33.06112 -32.29730 -31.35349 -28.97793 -28.77232 -26.79495 -25.32454 -24.19989 -22.86056 -22.12703 -21.37213 -20.82542 -19.74735 -19.17851 -18.98600 -18.80526 -17.86630 -17.71293 -17.09132 -16.84703 -16.80581 -16.47233 -16.27177 -16.12089 -15.95267 -15.75893 -15.66796 -15.28858 -15.06265 -14.69033 -14.56576 -14.34360 -14.15824 -13.56796 -13.34946 -13.17925 -12.96433 -12.94506 -12.83493 -12.72816 -12.30094 -11.96787 -11.92710 -11.76113 -11.35820 -10.92894 -10.71008 -10.55552 -10.51262 -10.15387 -9.86391 -8.89498 -7.91448 -5.27256 -0.88630 -0.42664 1.34240 1.46709 1.48435 1.57035 1.83732 2.20889 2.33526 2.47931 2.69174 2.73374 3.07509 3.12221 3.26421 3.34434 3.61347 3.72141 3.75245 3.86575 4.14236 4.20179 4.26338 4.29635 4.38630 4.44635 4.55529 4.60433 4.63301 4.67236 4.75750 4.96024 5.05089 5.14932 5.32439 5.35758 5.40180 5.46304 5.55568 5.68339 6.19339 6.35551 7.01351 7.02244 7.69593 8.47395 9.22186 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.001991 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.647269 B =14062.932795 C =14955.129486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.188 3.812 11 C -0.177 4.177 12 H 0.113 0.887 13 C -0.108 4.108 14 H 0.114 0.886 15 C 0.163 3.837 16 N -0.702 5.702 17 C 0.559 3.441 18 O -0.562 6.562 19 C -0.159 4.159 20 C -0.047 4.047 21 C 0.052 3.948 22 F -0.124 7.124 23 C 0.128 3.872 24 F -0.117 7.117 25 C -0.158 4.158 26 C 0.171 3.829 27 F -0.116 7.116 28 C -0.160 4.160 29 H 0.125 0.875 30 C 0.148 3.852 31 H 0.249 0.751 32 H 0.051 0.949 33 H 0.004 0.996 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.030 0.970 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 -27.266 1.029 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.063 3.937 11 C -0.197 4.197 12 H 0.131 0.869 13 C -0.127 4.127 14 H 0.132 0.868 15 C 0.040 3.960 16 N -0.355 5.355 17 C 0.346 3.654 18 O -0.442 6.442 19 C -0.163 4.163 20 C -0.066 4.066 21 C 0.032 3.968 22 F -0.102 7.102 23 C 0.107 3.893 24 F -0.095 7.095 25 C -0.177 4.177 26 C 0.150 3.850 27 F -0.094 7.094 28 C -0.180 4.180 29 H 0.142 0.858 30 C 0.023 3.977 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.255 0.745 37 H 0.204 0.796 38 H 0.208 0.792 39 H 0.048 0.952 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.202 -27.036 0.249 27.362 hybrid contribution 0.200 1.065 0.565 1.222 sum -4.003 -25.971 0.815 26.290 Atomic orbital electron populations 1.70083 1.06458 1.25691 1.57262 1.25720 0.96500 1.01233 1.02242 0.85087 0.77810 0.79008 0.77482 1.21356 1.22090 1.19160 1.19376 0.91324 0.83734 1.42383 0.90213 1.45533 1.13919 1.01252 1.73870 1.20804 0.85989 0.93747 0.93194 1.23916 1.04666 0.91300 0.99843 0.86920 1.22420 0.97958 0.91913 1.00446 0.86808 1.20752 1.01523 0.81501 0.92256 1.45747 1.69433 1.08624 1.11677 1.17968 0.77139 0.83319 0.86986 1.90871 1.52829 1.85438 1.15042 1.19797 1.09073 0.93590 0.93868 1.21245 0.95419 0.99076 0.90887 1.17468 1.07289 0.93819 0.78267 1.91597 1.93913 1.96856 1.27834 1.17520 1.00406 0.82331 0.89065 1.91602 1.91443 1.50252 1.76208 1.21048 1.04969 1.00690 0.90979 1.17433 0.97047 0.92805 0.77742 1.91630 1.92536 1.96697 1.28507 1.23934 0.90590 1.02219 1.01245 0.85769 1.21307 0.97707 0.84226 0.94505 0.94154 0.93088 0.97803 0.90892 0.90758 0.74513 0.79568 0.79207 0.95185 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.29 10.86 21.65 0.24 -56.05 16 2 C -0.06 -3.55 5.40 84.86 0.46 -3.10 16 3 Si 0.98 45.05 29.56 68.60 2.03 47.08 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.24 -13.22 10.35 84.03 0.87 -12.35 16 8 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 9 N -0.62 -31.19 3.38 -688.17 -2.33 -33.52 16 10 C 0.19 8.91 5.70 86.53 0.49 9.40 16 11 C -0.18 -6.14 6.85 -9.88 -0.07 -6.21 16 12 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 13 C -0.11 -2.74 5.39 -10.79 -0.06 -2.80 16 14 H 0.11 2.73 8.04 -2.39 -0.02 2.71 16 15 C 0.16 3.50 5.95 86.38 0.51 4.02 16 16 N -0.70 -12.06 5.51 -466.23 -2.57 -14.62 16 17 C 0.56 11.67 7.76 86.71 0.67 12.34 16 18 O -0.56 -16.59 15.33 -3.97 -0.06 -16.66 16 19 C -0.16 -2.42 5.88 -20.05 -0.12 -2.54 16 20 C -0.05 -0.48 9.51 22.56 0.21 -0.26 16 21 C 0.05 0.61 7.29 22.36 0.16 0.78 16 22 F -0.12 -1.76 17.17 44.97 0.77 -0.99 16 23 C 0.13 1.47 7.31 22.49 0.16 1.64 16 24 F -0.12 -1.54 17.17 44.97 0.77 -0.77 16 25 C -0.16 -1.62 9.99 22.31 0.22 -1.40 16 26 C 0.17 2.65 7.28 22.66 0.16 2.82 16 27 F -0.12 -2.43 15.54 44.97 0.70 -1.74 16 28 C -0.16 -4.91 6.74 -9.89 -0.07 -4.98 16 29 H 0.12 3.36 8.12 -2.39 -0.02 3.35 16 30 C 0.15 5.69 7.04 86.53 0.61 6.29 16 31 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.05 2.79 6.51 -2.38 -0.02 2.77 16 33 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.07 1.65 7.94 -2.39 -0.02 1.63 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.42 4.60 6.43 -92.71 -0.60 4.00 16 37 H 0.19 0.88 6.40 -2.91 -0.02 0.86 16 38 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -71.23 352.67 4.31 -66.92 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.52 Total: 6.69 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.24 Total: 3.66 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.66 Total: -104.20 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.06 Total: -16.66 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 2.24 Total: -3.49 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.23 4.31 -66.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978640327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.706 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds