Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48503 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47087 * 299.99625 * 3 2 1 6 6 H 1.48501 * 109.47100 * 59.99975 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00447 * 189.10469 * 7 2 1 9 9 N 1.36942 * 120.00144 * 9.10557 * 7 2 1 10 10 C 1.48145 * 127.83571 * 15.58770 * 9 7 2 11 11 C 1.54390 * 104.61604 * 140.39721 * 10 9 7 12 12 H 1.09008 * 118.18154 * 244.20316 * 11 10 9 13 13 C 1.52996 * 118.12381 * 87.19422 * 11 10 9 14 14 H 1.09001 * 117.43980 * 16.10806 * 13 11 10 15 15 C 1.53003 * 117.44477 * 160.85255 * 13 11 10 16 16 N 1.46494 * 109.47117 * 185.00069 * 15 13 11 17 17 C 1.34779 * 120.00082 * 180.02562 * 16 15 13 18 18 O 1.21572 * 119.99989 * 359.97438 * 17 16 15 19 19 C 1.47725 * 120.00309 * 179.97438 * 17 16 15 20 20 C 1.39635 * 120.10161 * 359.72342 * 19 17 16 21 21 C 1.38073 * 119.90229 * 179.78772 * 20 19 17 22 22 F 1.35091 * 119.95166 * 180.23178 * 21 20 19 23 23 C 1.38785 * 120.09704 * 0.47035 * 21 20 19 24 24 F 1.35103 * 119.89925 * 179.76462 * 23 21 20 25 25 C 1.38784 * 120.20422 * 359.78222 * 23 21 20 26 26 F 1.35098 * 119.94937 * 179.97438 * 25 23 21 27 27 C 1.38078 * 120.09923 * 359.97438 * 25 23 21 28 28 C 1.52995 * 60.55572 * 268.45547 * 13 11 10 29 29 H 1.09002 * 119.54474 * 248.23101 * 28 13 11 30 30 C 1.48140 * 127.84195 * 195.56771 * 9 7 2 31 31 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.40715 * 21.61523 * 10 9 7 33 33 H 1.08997 * 110.41237 * 259.18590 * 10 9 7 34 34 H 1.09005 * 109.47056 * 305.00186 * 15 13 11 35 35 H 1.09003 * 109.46860 * 64.99921 * 15 13 11 36 36 H 0.96999 * 120.00164 * 359.97438 * 16 15 13 37 37 H 1.08001 * 120.04768 * 0.02562 * 20 19 17 38 38 H 1.08001 * 120.04688 * 179.97438 * 27 25 23 39 39 H 1.09000 * 110.40859 * 100.81619 * 30 9 7 40 40 H 1.08996 * 110.50838 * 338.44038 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3385 -2.3807 -0.1866 10 6 -0.0341 -2.5710 -0.7107 11 6 0.0643 -3.8171 -1.6169 12 1 -0.1224 -3.6938 -2.6838 13 6 -0.1181 -5.1931 -0.9733 14 1 -0.5683 -5.2279 0.0188 15 6 -0.4659 -6.3628 -1.8963 16 7 -0.7165 -7.5615 -1.0922 17 6 -1.0420 -8.7218 -1.6957 18 8 -1.1282 -8.7736 -2.9073 19 6 -1.2942 -9.9307 -0.8850 20 6 -1.1902 -9.8751 0.5064 21 6 -1.4311 -11.0064 1.2604 22 9 -1.3353 -10.9526 2.6068 23 6 -1.7665 -12.2000 0.6367 24 9 -1.9967 -13.3058 1.3781 25 6 -1.8659 -12.2614 -0.7462 26 9 -2.1924 -13.4261 -1.3479 27 6 -1.6317 -11.1338 -1.5080 28 6 1.2863 -4.5975 -1.0899 29 1 2.0101 -5.0555 -1.7640 30 6 1.8194 -3.7546 0.0886 31 1 -0.4849 0.8401 -0.0004 32 1 -0.3430 -1.7020 -1.2916 33 1 -0.7319 -2.7500 0.1073 34 1 -1.3585 -6.1183 -2.4721 35 1 0.3655 -6.5486 -2.5763 36 1 -0.6474 -7.5203 -0.1256 37 1 -0.9255 -8.9476 0.9922 38 1 -1.7089 -11.1826 -2.5841 39 1 1.4112 -4.1184 1.0315 40 1 2.9088 -3.7802 0.1121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978749847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -77.971832 kcal Electronic energy + Delta-G solvation = -27776.975046 eV Core-core repulsion = 23144.417665 eV Total energy + Delta-G solvation = -4632.557381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -50.32538 -49.72336 -49.00429 -40.67426 -39.06420 -38.33691 -35.29173 -33.52757 -31.71289 -31.23245 -30.73278 -27.61263 -27.18989 -25.35009 -24.29376 -23.80095 -21.29908 -21.26040 -20.15866 -19.36335 -19.06051 -18.51806 -18.19890 -17.34966 -17.10409 -16.85149 -16.69361 -16.00749 -15.86833 -15.62176 -15.47373 -15.41365 -14.98186 -14.91803 -14.52023 -14.16814 -13.80647 -13.44968 -13.24170 -13.19440 -12.90540 -12.75191 -12.35649 -12.31186 -11.93331 -11.33553 -11.18000 -10.88899 -10.74160 -10.54168 -10.36004 -10.15410 -9.80463 -9.67536 -9.64250 -9.52707 -9.25074 -9.09876 -8.70286 -6.92642 -5.85327 -3.19757 -0.30558 0.09013 1.95572 2.53130 2.77096 2.93740 3.34277 3.40642 3.42931 3.47186 3.54614 3.71789 3.89723 4.06857 4.19063 4.41610 4.67215 4.75694 4.79892 5.00218 5.09795 5.18663 5.26906 5.29783 5.35999 5.41257 5.67385 5.75920 5.80390 5.86534 5.87898 6.09292 6.15005 6.46040 6.57361 6.62294 6.83782 7.10462 7.28884 7.47382 7.66680 7.76204 8.15285 9.05690 9.68453 10.44703 11.29037 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.001880 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.945064 B =14889.500544 C =15624.435785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.159 4.159 12 H 0.104 0.896 13 C -0.153 4.153 14 H 0.104 0.896 15 C 0.154 3.846 16 N -0.712 5.712 17 C 0.559 3.441 18 O -0.526 6.526 19 C -0.081 4.081 20 C -0.104 4.104 21 C 0.097 3.903 22 F -0.113 7.113 23 C 0.055 3.945 24 F -0.112 7.112 25 C 0.095 3.905 26 F -0.114 7.114 27 C -0.077 4.077 28 C -0.171 4.171 29 H 0.104 0.896 30 C 0.153 3.847 31 H 0.254 0.746 32 H 0.091 0.909 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.403 0.597 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.024 0.976 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -24.044 -0.175 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.057 3.943 11 C -0.180 4.180 12 H 0.122 0.878 13 C -0.173 4.173 14 H 0.122 0.878 15 C 0.031 3.969 16 N -0.363 5.363 17 C 0.344 3.656 18 O -0.403 6.403 19 C -0.084 4.084 20 C -0.123 4.123 21 C 0.077 3.923 22 F -0.091 7.091 23 C 0.033 3.967 24 F -0.090 7.090 25 C 0.074 3.926 26 F -0.092 7.092 27 C -0.097 4.097 28 C -0.191 4.191 29 H 0.122 0.878 30 C 0.027 3.973 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.239 0.761 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.513 -23.826 -0.956 24.269 hybrid contribution 0.337 0.345 0.843 0.972 sum -4.176 -23.481 -0.113 23.850 Atomic orbital electron populations 1.69901 1.05069 1.25377 1.55807 1.24902 0.95662 0.98027 1.01709 0.86041 0.78891 0.83474 0.77311 1.20348 1.21573 1.21670 1.19040 0.90845 0.82328 1.43327 0.90509 1.45213 1.13343 1.00010 1.73210 1.21074 0.86869 0.92741 0.93578 1.24246 1.02016 0.91584 1.00157 0.87772 1.22534 1.00601 0.93834 1.00283 0.87815 1.20990 1.01581 0.81632 0.92694 1.45964 1.69638 1.09583 1.11152 1.17782 0.77804 0.82668 0.87337 1.90839 1.51269 1.84867 1.13345 1.19677 1.01744 0.94638 0.92379 1.21365 0.99630 0.98315 0.93015 1.17112 1.04057 0.92732 0.78427 1.91615 1.93494 1.96729 1.27267 1.17830 1.06584 0.83912 0.88372 1.91595 1.91838 1.49701 1.75868 1.17149 1.03642 0.83669 0.88114 1.91605 1.89802 1.44913 1.82874 1.21255 0.96758 0.89160 1.02539 1.24014 0.89754 1.02559 1.02758 0.87818 1.21140 0.97215 0.86035 0.92908 0.93565 0.89128 0.95827 0.90540 0.90865 0.76148 0.82172 0.81348 0.95849 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.87 55.49 0.60 -25.55 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.47 29.56 -169.99 -5.03 16.45 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.16 10.35 -15.06 -0.16 -6.32 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 N -0.59 -14.63 3.38 -168.86 -0.57 -15.20 16 10 C 0.18 4.17 5.70 -2.41 -0.01 4.16 16 11 C -0.16 -2.77 6.85 -89.22 -0.61 -3.38 16 12 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 13 C -0.15 -2.06 5.39 -90.62 -0.49 -2.54 16 14 H 0.10 1.36 8.04 -51.93 -0.42 0.94 16 15 C 0.15 1.74 5.95 -4.04 -0.02 1.71 16 16 N -0.71 -6.48 5.51 -61.29 -0.34 -6.82 16 17 C 0.56 5.59 7.77 -12.38 -0.10 5.50 16 18 O -0.53 -7.09 16.34 5.30 0.09 -7.00 16 19 C -0.08 -0.61 5.87 -104.98 -0.62 -1.23 16 20 C -0.10 -0.64 9.51 -39.12 -0.37 -1.01 16 21 C 0.10 0.72 7.29 -39.44 -0.29 0.43 16 22 F -0.11 -0.95 17.17 2.25 0.04 -0.91 16 23 C 0.05 0.44 7.32 -39.18 -0.29 0.16 16 24 F -0.11 -1.05 17.08 2.25 0.04 -1.01 16 25 C 0.09 0.73 7.29 -39.44 -0.29 0.45 16 26 F -0.11 -0.97 17.17 2.25 0.04 -0.94 16 27 C -0.08 -0.57 9.57 -39.12 -0.37 -0.95 16 28 C -0.17 -2.74 6.74 -89.22 -0.60 -3.34 16 29 H 0.10 1.53 8.12 -51.93 -0.42 1.11 16 30 C 0.15 3.01 7.04 -2.41 -0.02 2.99 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.09 2.34 6.51 -51.93 -0.34 2.00 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 36 H 0.40 2.68 6.43 -40.82 -0.26 2.42 16 37 H 0.16 0.63 6.40 -52.49 -0.34 0.29 16 38 H 0.17 1.18 7.65 -52.49 -0.40 0.78 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -31.00 354.40 -8.36 -39.36 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.25 Total: -0.09 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -4.33 Total: -3.64 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.31 Total: -47.57 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: 0.09 Total: -7.00 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.12 Total: -2.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.00 -8.36 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978749847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.608 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds