Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47480 * 300.00301 * 3 2 1 6 6 H 1.48503 * 109.47210 * 60.00676 * 3 2 1 7 7 C 1.38813 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00817 * 164.50859 * 7 2 1 9 9 N 1.36942 * 119.99288 * 344.51359 * 7 2 1 10 10 C 1.47002 * 121.37590 * 335.96845 * 9 7 2 11 11 C 1.50324 * 109.16690 * 222.97387 * 10 9 7 12 12 C 1.29459 * 123.65093 * 349.02005 * 11 10 9 13 13 C 1.50695 * 117.69747 * 180.86154 * 12 11 10 14 14 N 1.46494 * 109.47378 * 94.99809 * 13 12 11 15 15 C 1.34777 * 119.99948 * 180.27268 * 14 13 12 16 16 O 1.21588 * 120.00521 * 359.72958 * 15 14 13 17 17 C 1.47551 * 120.00000 * 179.72599 * 15 14 13 18 18 C 1.39932 * 120.17472 * 89.72320 * 17 15 14 19 19 F 1.35095 * 120.07241 * 0.02562 * 18 17 15 20 20 C 1.38175 * 119.84979 * 179.78763 * 18 17 15 21 21 C 1.38335 * 120.21255 * 0.50012 * 20 18 17 22 22 C 1.38448 * 120.36024 * 359.72967 * 21 20 18 23 23 F 1.35099 * 119.92659 * 180.02562 * 22 21 20 24 24 C 1.38440 * 120.14370 * 0.03233 * 22 21 20 25 25 F 1.35101 * 120.11151 * 179.97438 * 24 22 21 26 26 C 1.49975 * 124.61066 * 1.14220 * 12 11 10 27 27 C 1.47340 * 121.37237 * 155.99549 * 9 7 2 28 28 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.52305 * 103.06522 * 10 9 7 30 30 H 1.09002 * 109.52518 * 342.87811 * 10 9 7 31 31 H 1.07994 * 118.17963 * 169.00004 * 11 10 9 32 32 H 1.09004 * 109.46938 * 334.99734 * 13 12 11 33 33 H 1.09004 * 109.47361 * 215.00704 * 13 12 11 34 34 H 0.97003 * 120.00167 * 0.02562 * 14 13 12 35 35 H 1.07994 * 119.89328 * 180.23378 * 20 18 17 36 36 H 1.08003 * 119.81876 * 179.72198 * 21 20 18 37 37 H 1.09000 * 109.31324 * 101.00750 * 26 12 11 38 38 H 1.08994 * 109.31356 * 220.43683 * 26 12 11 39 39 H 1.09001 * 109.78003 * 237.78458 * 27 9 7 40 40 H 1.08997 * 109.77697 * 358.59469 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2190 -0.2503 9 7 1.3629 -2.3666 0.3156 10 6 0.1445 -2.3660 1.1382 11 6 0.2248 -3.4838 2.1400 12 6 1.1205 -4.4177 2.1026 13 6 1.0642 -5.4853 3.1647 14 7 0.3204 -6.6407 2.6568 15 6 0.1367 -7.7215 3.4408 16 8 0.5926 -7.7396 4.5678 17 6 -0.6176 -8.8828 2.9314 18 6 0.0481 -9.9147 2.2606 19 9 1.3851 -9.8510 2.0775 20 6 -0.6643 -11.0011 1.7902 21 6 -2.0342 -11.0666 1.9714 22 6 -2.7024 -10.0483 2.6296 23 9 -4.0404 -10.1215 2.8021 24 6 -2.0026 -8.9552 3.1113 25 9 -2.6555 -7.9616 3.7530 26 6 2.2140 -4.5088 1.0802 27 6 1.8590 -3.6720 -0.1541 28 1 -0.4850 0.8401 0.0004 29 1 -0.7264 -2.5114 0.4992 30 1 0.0587 -1.4135 1.6613 31 1 -0.5051 -3.5091 2.9355 32 1 0.5640 -5.0915 4.0495 33 1 2.0771 -5.7915 3.4262 34 1 -0.0431 -6.6264 1.7576 35 1 -0.1506 -11.7997 1.2757 36 1 -2.5854 -11.9167 1.5972 37 1 3.1444 -4.1418 1.5137 38 1 2.3438 -5.5494 0.7830 39 1 1.0847 -4.1739 -0.7344 40 1 2.7476 -3.5293 -0.7691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001111545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -118.161337 kcal Electronic energy + Delta-G solvation = -28785.372638 eV Core-core repulsion = 24151.072510 eV Total energy + Delta-G solvation = -4634.300128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.77299 -50.27021 -49.82119 -41.25518 -39.65836 -39.14436 -36.55228 -34.67276 -33.04669 -32.27806 -31.44195 -31.22029 -28.70810 -26.44954 -25.15906 -24.38660 -24.11645 -22.89675 -22.10360 -19.93926 -19.49995 -19.27451 -19.13854 -18.02715 -17.88179 -17.40978 -17.27182 -17.06836 -16.93664 -16.68255 -16.20641 -16.15154 -15.89406 -15.65166 -15.58799 -15.39200 -15.26689 -15.02357 -14.52946 -14.17778 -14.01492 -13.72919 -13.46009 -13.29866 -13.05921 -13.00052 -12.93718 -12.82641 -12.62914 -12.23410 -12.12519 -11.72957 -11.54519 -11.27594 -10.71236 -10.44513 -10.36433 -9.88694 -9.72108 -8.77216 -7.89904 -5.31266 -0.62804 -0.47519 1.05921 1.09765 1.45658 1.47921 1.57813 1.86556 2.04908 2.35004 2.50068 2.76049 3.13807 3.23368 3.27407 3.49956 3.56649 3.58708 3.80436 3.91067 4.10752 4.36777 4.41439 4.50418 4.56740 4.58553 4.67343 4.69775 4.80235 4.80707 4.87535 5.05282 5.11141 5.19171 5.36489 5.40093 5.44949 5.60253 5.71386 6.10475 6.18961 6.32387 6.81144 7.11829 7.81635 8.35338 9.18837 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002446 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.758412 B =11443.423408 C =11931.276165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.256 4.256 8 H 0.071 0.929 9 N -0.616 5.616 10 C 0.205 3.795 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.164 3.836 14 N -0.695 5.695 15 C 0.562 3.438 16 O -0.562 6.562 17 C -0.190 4.190 18 C 0.148 3.852 19 F -0.124 7.124 20 C -0.108 4.108 21 C -0.053 4.053 22 C 0.056 3.944 23 F -0.126 7.126 24 C 0.108 3.892 25 F -0.130 7.130 26 C -0.084 4.084 27 C 0.139 3.861 28 H 0.249 0.751 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.203 0.797 36 H 0.207 0.793 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 -27.479 2.166 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.386 4.386 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.159 4.159 12 C -0.141 4.141 13 C 0.042 3.958 14 N -0.346 5.346 15 C 0.347 3.653 16 O -0.441 6.441 17 C -0.195 4.195 18 C 0.127 3.873 19 F -0.102 7.102 20 C -0.126 4.126 21 C -0.071 4.071 22 C 0.035 3.965 23 F -0.104 7.104 24 C 0.087 3.913 25 F -0.108 7.108 26 C -0.123 4.123 27 C 0.014 3.986 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.251 0.749 35 H 0.220 0.780 36 H 0.224 0.776 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.312 -27.274 2.978 27.635 hybrid contribution -0.228 1.947 0.019 1.960 sum -3.540 -25.327 2.997 25.748 Atomic orbital electron populations 1.70169 1.06504 1.25722 1.56210 1.25741 0.96174 1.01349 1.01675 0.85198 0.78592 0.79923 0.76696 1.19096 1.21887 1.21920 1.19551 0.92585 0.85543 1.40876 0.91083 1.44424 1.29371 1.02251 1.57912 1.19397 0.87813 0.94851 0.89921 1.22993 0.97906 0.96170 0.98844 1.20577 0.98574 0.96409 0.98585 1.20384 0.96770 0.83806 0.94838 1.46063 1.55024 1.15230 1.18251 1.18052 0.79552 0.82750 0.84932 1.90819 1.51162 1.81917 1.20155 1.19689 0.92681 0.98981 1.08112 1.17568 0.77884 0.94509 0.97312 1.91593 1.29611 1.96220 1.92791 1.21500 0.93534 0.97361 1.00209 1.21570 0.93901 0.97546 0.94084 1.17706 0.78404 0.95961 1.04383 1.91574 1.28897 1.96180 1.93764 1.17497 0.88521 0.87365 0.97950 1.91566 1.80672 1.59540 1.79023 1.20737 0.96208 1.00409 0.94908 1.21182 0.97454 0.85711 0.94287 0.94135 0.96711 0.92416 0.87120 0.91604 0.90446 0.74935 0.77961 0.77596 0.91554 0.89378 0.95337 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.30 11.08 21.65 0.24 -55.06 16 2 C -0.05 -3.04 5.01 84.86 0.43 -2.62 16 3 Si 0.97 44.97 29.58 68.60 2.03 47.00 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 7 C -0.26 -13.96 9.71 84.03 0.82 -13.15 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 9 N -0.62 -30.57 3.01 -703.02 -2.11 -32.68 16 10 C 0.21 9.89 5.23 85.42 0.45 10.34 16 11 C -0.14 -5.21 9.47 27.10 0.26 -4.95 16 12 C -0.14 -4.56 5.22 -15.14 -0.08 -4.64 16 13 C 0.16 4.69 5.66 85.63 0.48 5.18 16 14 N -0.70 -17.91 5.54 -470.00 -2.61 -20.51 16 15 C 0.56 15.83 6.54 86.70 0.57 16.40 16 16 O -0.56 -20.09 17.11 -3.99 -0.07 -20.16 16 17 C -0.19 -4.05 5.64 -20.02 -0.11 -4.16 16 18 C 0.15 2.26 7.29 22.67 0.17 2.43 16 19 F -0.12 -2.28 16.83 44.97 0.76 -1.53 16 20 C -0.11 -0.65 10.01 22.28 0.22 -0.43 16 21 C -0.05 -0.29 10.01 22.34 0.22 -0.07 16 22 C 0.06 0.80 7.29 22.37 0.16 0.96 16 23 F -0.13 -2.09 17.18 44.97 0.77 -1.32 16 24 C 0.11 2.23 7.30 22.71 0.17 2.39 16 25 F -0.13 -3.41 16.74 44.97 0.75 -2.65 16 26 C -0.08 -2.67 5.95 29.72 0.18 -2.49 16 27 C 0.14 5.45 6.59 86.32 0.57 6.02 16 28 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 3.17 6.41 -2.39 -0.02 3.15 16 31 H 0.11 3.77 7.73 -2.91 -0.02 3.75 16 32 H 0.07 1.98 7.78 -2.38 -0.02 1.96 16 33 H 0.08 2.18 8.11 -2.38 -0.02 2.16 16 34 H 0.41 9.19 8.45 -92.71 -0.78 8.40 16 35 H 0.20 -0.35 8.06 -2.91 -0.02 -0.38 16 36 H 0.21 -0.58 8.06 -2.91 -0.02 -0.61 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 Total: -1.00 -72.90 356.60 4.58 -68.32 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.32 Total: 7.38 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 4.49 Total: 11.21 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -4.48 Total: -108.25 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.07 Total: -20.16 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 2.28 Total: -5.50 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.90 4.58 -68.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001111545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.840 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds