Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48505 * 109.47313 * 274.45518 * 3 2 1 5 5 H 1.48500 * 109.46839 * 34.45235 * 3 2 1 6 6 H 1.48499 * 109.47138 * 154.45584 * 3 2 1 7 7 C 1.38815 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99826 * 164.49680 * 7 2 1 9 9 N 1.36936 * 119.99827 * 344.49785 * 7 2 1 10 10 C 1.47006 * 121.37424 * 335.97528 * 9 7 2 11 11 C 1.50331 * 109.16746 * 222.97018 * 10 9 7 12 12 C 1.29457 * 123.64765 * 349.02990 * 11 10 9 13 13 C 1.50698 * 117.69221 * 180.85713 * 12 11 10 14 14 N 1.46503 * 109.47329 * 94.99688 * 13 12 11 15 15 C 1.34775 * 119.99881 * 180.02562 * 14 13 12 16 16 O 1.21567 * 119.99966 * 359.97438 * 15 14 13 17 17 C 1.47730 * 119.99539 * 179.72251 * 15 14 13 18 18 C 1.39628 * 120.10412 * 359.97438 * 17 15 14 19 19 C 1.38079 * 119.89838 * 179.78936 * 18 17 15 20 20 F 1.35099 * 119.94944 * 180.25110 * 19 18 17 21 21 C 1.38786 * 120.09937 * 0.48720 * 19 18 17 22 22 F 1.35102 * 119.89605 * 179.72097 * 21 19 18 23 23 C 1.38778 * 120.20224 * 359.74270 * 21 19 18 24 24 F 1.35107 * 119.94871 * 180.02562 * 23 21 19 25 25 C 1.38075 * 120.10440 * 0.02562 * 23 21 19 26 26 C 1.49975 * 124.61080 * 1.13055 * 12 11 10 27 27 C 1.47338 * 121.37455 * 156.00271 * 9 7 2 28 28 H 0.97002 * 120.00183 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.52287 * 103.07080 * 10 9 7 30 30 H 1.08991 * 109.52366 * 342.87797 * 10 9 7 31 31 H 1.07994 * 118.17502 * 168.99559 * 11 10 9 32 32 H 1.09000 * 109.47139 * 334.99604 * 13 12 11 33 33 H 1.09002 * 109.47144 * 214.99506 * 13 12 11 34 34 H 0.96997 * 119.99585 * 359.97438 * 14 13 12 35 35 H 1.07999 * 120.05197 * 359.97438 * 18 17 15 36 36 H 1.08003 * 120.05346 * 179.97438 * 25 23 21 37 37 H 1.08998 * 109.31105 * 101.02033 * 26 12 11 38 38 H 1.08998 * 109.30777 * 220.43994 * 26 12 11 39 39 H 1.08999 * 109.77785 * 237.78129 * 27 9 7 40 40 H 1.09001 * 109.77903 * 358.59428 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4036 2.1008 -1.3959 5 1 1.4979 2.6236 0.7921 6 1 3.5917 1.4148 0.6037 7 6 2.0103 -1.2022 -0.0005 8 1 3.0607 -1.2190 -0.2505 9 7 1.3629 -2.3666 0.3159 10 6 0.1447 -2.3658 1.1387 11 6 0.2250 -3.4835 2.1407 12 6 1.1209 -4.4174 2.1033 13 6 1.0646 -5.4847 3.1657 14 7 0.3208 -6.6403 2.6580 15 6 0.1415 -7.7229 3.4405 16 8 0.5975 -7.7408 4.5673 17 6 -0.6138 -8.8857 2.9307 18 6 -1.1434 -8.8651 1.6389 19 6 -1.8450 -9.9560 1.1652 20 9 -2.3535 -9.9392 -0.0863 21 6 -2.0327 -11.0677 1.9746 22 9 -2.7247 -12.1305 1.5089 23 6 -1.5123 -11.0907 3.2609 24 9 -1.6977 -12.1758 4.0442 25 6 -0.8053 -10.0064 3.7414 26 6 2.2141 -4.5086 1.0807 27 6 1.8590 -3.6721 -0.1537 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7264 -2.5114 0.4998 30 1 0.0589 -1.4134 1.6616 31 1 -0.5048 -3.5086 2.9363 32 1 0.5645 -5.0908 4.0504 33 1 2.0776 -5.7910 3.4270 34 1 -0.0433 -6.6258 1.7591 35 1 -1.0020 -7.9985 1.0101 36 1 -0.4010 -10.0250 4.7427 37 1 3.1445 -4.1416 1.5141 38 1 2.3439 -5.5493 0.7837 39 1 1.0846 -4.1740 -0.7337 40 1 2.7475 -3.5295 -0.7688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001194807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -98.954344 kcal Electronic energy + Delta-G solvation = -28231.601857 eV Core-core repulsion = 23598.134606 eV Total energy + Delta-G solvation = -4633.467251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.27059 -49.66536 -48.94917 -40.59157 -38.60441 -37.75844 -35.21285 -33.17524 -31.62560 -31.17289 -30.72555 -29.79114 -27.18544 -25.02312 -24.07001 -23.62325 -22.82659 -21.29114 -21.04628 -19.29091 -18.46101 -18.21663 -17.72410 -17.29377 -17.10516 -16.63648 -15.95146 -15.82671 -15.78573 -15.53898 -15.39945 -15.34830 -15.03651 -14.87605 -14.44716 -13.97595 -13.78214 -13.53138 -13.35159 -13.14743 -13.11263 -12.47401 -12.30746 -12.23133 -12.11593 -11.66180 -11.47451 -10.98854 -10.78768 -10.56669 -10.40723 -10.33940 -9.90390 -9.70116 -9.60118 -9.55607 -9.20168 -8.76433 -8.18275 -6.82697 -5.87122 -3.25968 -0.24191 0.15027 2.02562 2.33676 2.72144 3.01447 3.15036 3.33383 3.40995 3.43070 3.53517 3.60494 3.78064 4.07278 4.26401 4.43462 4.76697 4.82463 4.99568 5.07379 5.17565 5.22651 5.31840 5.34223 5.48765 5.68183 5.79515 5.92452 5.96077 6.04879 6.18462 6.22613 6.40541 6.63474 6.77282 7.04767 7.14527 7.18267 7.28674 7.63683 7.73770 7.86007 8.30471 9.12019 9.74663 10.31964 11.23456 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.002151 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.562451 B =13011.159781 C =13729.853556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.192 3.808 11 C -0.119 4.119 12 C -0.171 4.171 13 C 0.157 3.843 14 N -0.709 5.709 15 C 0.557 3.443 16 O -0.529 6.529 17 C -0.080 4.080 18 C -0.103 4.103 19 C 0.098 3.902 20 F -0.113 7.113 21 C 0.054 3.946 22 F -0.112 7.112 23 C 0.094 3.906 24 F -0.114 7.114 25 C -0.078 4.078 26 C -0.091 4.091 27 C 0.143 3.857 28 H 0.254 0.746 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.402 0.598 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -20.908 4.900 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.140 4.140 12 C -0.172 4.172 13 C 0.035 3.965 14 N -0.360 5.360 15 C 0.342 3.658 16 O -0.407 6.407 17 C -0.084 4.084 18 C -0.123 4.123 19 C 0.077 3.923 20 F -0.091 7.091 21 C 0.032 3.968 22 F -0.090 7.090 23 C 0.074 3.926 24 F -0.093 7.093 25 C -0.098 4.098 26 C -0.130 4.130 27 C 0.017 3.983 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.238 0.762 35 H 0.178 0.822 36 H 0.186 0.814 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.420 -20.800 5.665 21.827 hybrid contribution -0.170 0.425 -0.617 0.768 sum -3.591 -20.375 5.048 21.296 Atomic orbital electron populations 1.70000 1.05192 1.25590 1.54702 1.24991 0.95404 0.98345 1.01128 0.86243 0.79136 0.83572 0.77620 1.21462 1.21537 1.20450 1.19176 0.92260 0.84303 1.41902 0.91331 1.44128 1.29219 1.01235 1.57245 1.19782 0.88872 0.94811 0.89779 1.23340 0.95634 0.96532 0.98515 1.20484 1.00212 0.97309 0.99163 1.20570 0.96240 0.83931 0.95785 1.46156 1.55814 1.16014 1.18001 1.17829 0.80251 0.82263 0.85443 1.90825 1.49868 1.81365 1.18598 1.19718 0.99810 0.95516 0.93353 1.21386 0.96721 0.98116 0.96074 1.17120 0.99815 0.94058 0.81302 1.91618 1.84751 1.96512 1.36210 1.17818 0.99934 0.86204 0.92816 1.91591 1.76171 1.52971 1.88309 1.17145 1.01553 0.86266 0.87673 1.91603 1.93384 1.51473 1.72794 1.21251 0.96362 0.89962 1.02203 1.20799 0.96597 0.99045 0.96525 1.20992 0.97396 0.87201 0.92731 0.93559 0.93980 0.88770 0.88655 0.91109 0.91020 0.76183 0.82159 0.81391 0.91603 0.92895 0.95863 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.31 11.08 55.49 0.61 -24.70 16 2 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.09 29.58 -169.99 -5.03 16.06 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.25 -6.50 9.71 -15.06 -0.15 -6.65 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -14.04 3.01 -173.56 -0.52 -14.56 16 10 C 0.19 4.26 5.23 -5.10 -0.03 4.23 16 11 C -0.12 -2.05 9.47 -35.78 -0.34 -2.39 16 12 C -0.17 -2.59 5.22 -100.99 -0.53 -3.12 16 13 C 0.16 2.00 5.66 -5.19 -0.03 1.97 16 14 N -0.71 -7.49 5.50 -62.47 -0.34 -7.83 16 15 C 0.56 6.15 7.77 -12.38 -0.10 6.06 16 16 O -0.53 -7.58 16.34 5.31 0.09 -7.50 16 17 C -0.08 -0.69 5.87 -104.98 -0.62 -1.30 16 18 C -0.10 -0.75 9.51 -39.12 -0.37 -1.12 16 19 C 0.10 0.81 7.29 -39.44 -0.29 0.52 16 20 F -0.11 -1.05 17.17 2.25 0.04 -1.01 16 21 C 0.05 0.48 7.32 -39.18 -0.29 0.19 16 22 F -0.11 -1.12 17.08 2.25 0.04 -1.08 16 23 C 0.09 0.79 7.29 -39.44 -0.29 0.50 16 24 F -0.11 -1.04 17.17 2.25 0.04 -1.00 16 25 C -0.08 -0.63 9.57 -39.12 -0.37 -1.01 16 26 C -0.09 -1.41 5.95 -28.09 -0.17 -1.58 16 27 C 0.14 2.73 6.59 -3.44 -0.02 2.71 16 28 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 2.36 6.41 -51.93 -0.33 2.03 16 31 H 0.10 1.45 7.73 -52.49 -0.41 1.04 16 32 H 0.07 0.94 7.78 -51.93 -0.40 0.53 16 33 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.40 3.51 6.49 -40.82 -0.26 3.25 16 35 H 0.16 0.87 6.40 -52.49 -0.34 0.53 16 36 H 0.17 1.29 7.65 -52.48 -0.40 0.89 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.09 7.96 -51.93 -0.41 0.67 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -29.62 353.00 -7.64 -37.27 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.22 Total: 0.12 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -3.67 Total: -1.10 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.25 Total: -47.09 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.12 Total: -3.09 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.62 -7.64 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001194807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.689 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds