Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00452 * 2 1 4 4 H 1.48493 * 109.47247 * 269.99947 * 3 2 1 5 5 H 1.48500 * 109.46982 * 30.00190 * 3 2 1 6 6 H 1.48498 * 109.47381 * 149.99593 * 3 2 1 7 7 C 1.38819 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99990 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94301 * 0.02562 * 9 7 2 11 11 C 1.56017 * 105.10485 * 181.98173 * 10 9 7 12 12 H 1.09001 * 116.25022 * 159.68631 * 11 10 9 13 13 C 1.57082 * 99.60622 * 32.80682 * 11 10 9 14 14 C 1.49287 * 126.94800 * 179.97438 * 9 7 2 15 15 H 1.08997 * 116.15332 * 15.86452 * 14 9 7 16 16 C 1.56017 * 104.09370 * 246.71626 * 14 9 7 17 17 N 1.47862 * 105.19453 * 288.71640 * 16 14 9 18 18 C 1.34781 * 126.94560 * 182.05048 * 17 16 14 19 19 O 1.21568 * 120.00252 * 174.71202 * 18 17 16 20 20 C 1.47695 * 119.99721 * 354.71672 * 18 17 16 21 21 C 1.39666 * 120.16642 * 318.25410 * 20 18 17 22 22 C 1.37853 * 119.87773 * 179.97438 * 21 20 18 23 23 C 1.38457 * 120.21875 * 0.02562 * 22 21 20 24 24 C 1.38207 * 120.34219 * 359.97438 * 23 22 21 25 25 C 1.50698 * 119.94445 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.47001 * 30.00022 * 25 24 23 27 27 F 1.39906 * 109.47086 * 149.99855 * 25 24 23 28 28 C 1.38322 * 120.11385 * 359.73676 * 24 23 22 29 29 F 1.35098 * 120.11413 * 180.27493 * 28 24 23 30 30 H 0.97002 * 119.99558 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.31933 * 300.88904 * 10 9 7 32 32 H 1.09003 * 110.31951 * 62.97268 * 10 9 7 33 33 H 1.09001 * 112.36525 * 191.71680 * 13 11 10 34 34 H 1.08993 * 112.37042 * 64.27893 * 13 11 10 35 35 H 1.09006 * 110.30945 * 47.67832 * 16 14 9 36 36 H 1.09004 * 110.31355 * 169.75687 * 16 14 9 37 37 H 1.08002 * 120.05726 * 0.02562 * 21 20 18 38 38 H 1.07994 * 119.88774 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.83024 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47111 * 269.99949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1424 -2.5668 -0.0005 11 6 -0.3641 -4.1103 0.0521 12 1 -1.3417 -4.4454 0.3985 13 6 0.8831 -4.5250 0.9124 14 6 1.9100 -3.7618 0.0005 15 1 2.9641 -3.8354 0.2680 16 6 1.5084 -4.3456 -1.3894 17 7 0.0519 -4.5853 -1.3029 18 6 -0.7386 -5.1222 -2.2533 19 8 -1.9081 -5.3515 -2.0132 20 6 -0.1840 -5.4323 -3.5866 21 6 0.6886 -4.5370 -4.2093 22 6 1.2031 -4.8326 -5.4536 23 6 0.8574 -6.0137 -6.0880 24 6 -0.0052 -6.9061 -5.4801 25 6 -0.3760 -8.1887 -6.1790 26 9 0.6832 -8.5971 -6.9968 27 9 -0.6388 -9.1795 -5.2269 28 6 -0.5251 -6.6263 -4.2292 29 9 -1.3640 -7.5013 -3.6326 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5822 -2.0912 0.8762 32 1 -0.5736 -2.1519 -0.9116 33 1 1.0482 -5.6025 0.9109 34 1 0.8435 -4.1189 1.9230 35 1 1.7275 -3.6269 -2.1792 36 1 2.0357 -5.2816 -1.5734 37 1 0.9602 -3.6151 -3.7165 38 1 1.8782 -4.1406 -5.9350 39 1 1.2639 -6.2388 -7.0629 40 1 -1.2644 -8.0264 -6.7892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032407365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = -84.592184 kcal Electronic energy + Delta-G solvation = -30079.500904 eV Core-core repulsion = 25446.656443 eV Total energy + Delta-G solvation = -4632.844461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.44761 -48.90120 -47.25272 -40.41011 -39.10970 -37.63673 -33.79581 -32.70402 -31.50982 -30.84393 -29.08506 -28.61093 -26.49204 -25.34814 -24.58786 -23.11041 -22.25347 -20.85447 -19.94820 -18.94865 -18.04408 -17.82693 -17.68383 -17.39862 -16.86457 -16.30327 -16.19891 -15.71986 -15.60990 -15.04323 -14.97700 -14.48446 -14.10332 -14.03710 -13.62314 -13.61699 -13.40897 -13.27920 -13.09934 -12.65650 -12.38510 -12.30956 -12.17534 -11.87004 -11.73718 -11.40830 -11.19769 -11.09760 -10.93320 -10.82640 -10.67725 -10.32008 -10.14179 -9.73727 -9.70012 -9.40807 -9.03359 -8.78466 -8.11986 -7.01462 -5.84299 -3.19320 0.53649 0.72325 2.74903 3.03780 3.31725 3.35758 3.37221 3.39875 3.43586 3.76276 3.89794 4.19252 4.35058 4.47905 4.56461 4.69490 4.74587 4.96616 5.01913 5.09553 5.27281 5.31582 5.48047 5.55559 5.59561 5.67515 5.69765 5.83939 5.84774 5.96862 6.11847 6.20384 6.33326 6.34454 6.46054 6.51517 6.59367 7.34364 7.38690 7.63820 7.91474 8.01933 8.38060 9.02439 9.63366 10.32010 11.27708 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003188 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.323391 B = 8781.263522 C = 9514.170804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.116 0.884 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.108 0.892 16 C 0.078 3.922 17 N -0.598 5.598 18 C 0.572 3.428 19 O -0.537 6.537 20 C -0.155 4.155 21 C -0.038 4.038 22 C -0.135 4.135 23 C -0.043 4.043 24 C -0.220 4.220 25 C 0.320 3.680 26 F -0.197 7.197 27 F -0.192 7.192 28 C 0.179 3.821 29 F -0.110 7.110 30 H 0.255 0.745 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -13.254 -11.370 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.126 0.874 16 C -0.047 4.047 17 N -0.331 5.331 18 C 0.360 3.640 19 O -0.416 6.416 20 C -0.159 4.159 21 C -0.056 4.056 22 C -0.153 4.153 23 C -0.062 4.062 24 C -0.222 4.222 25 C 0.267 3.733 26 F -0.178 7.178 27 F -0.173 7.173 28 C 0.159 3.841 29 F -0.088 7.088 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.206 -13.177 -11.257 17.471 hybrid contribution 0.346 0.749 -0.041 0.826 sum 2.552 -12.428 -11.298 16.989 Atomic orbital electron populations 1.69909 1.04964 1.25419 1.56212 1.24822 0.95675 0.97738 1.01905 0.86116 0.78602 0.83409 0.77570 1.21597 1.21664 1.20609 1.19045 0.90416 0.81996 1.44699 0.90090 1.45260 1.01297 0.99295 1.86304 1.21949 0.84765 0.86946 1.01499 1.24465 0.98046 0.97641 0.80121 0.86609 1.24155 0.96488 0.99069 0.99276 1.23195 0.96675 0.86270 0.90613 0.87376 1.23500 0.79726 0.99120 1.02375 1.49145 1.09468 1.59185 1.15299 1.17461 0.85517 0.78079 0.82972 1.90797 1.16186 1.53870 1.80732 1.20121 1.02664 0.95588 0.97489 1.21704 0.91072 0.98543 0.94302 1.21185 1.01540 0.97382 0.95235 1.20974 0.93171 0.92267 0.99749 1.20405 1.06131 0.99479 0.96219 1.20157 0.88636 0.81941 0.82614 1.93001 1.60280 1.91472 1.73061 1.93060 1.94272 1.63999 1.66004 1.17241 0.89656 0.87255 0.89974 1.91613 1.67517 1.66743 1.82969 0.93509 0.92362 0.93397 0.91534 0.89539 0.90722 0.92650 0.83044 0.83865 0.83822 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.81 10.56 55.49 0.59 -25.22 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.23 -5.92 10.37 -15.06 -0.16 -6.07 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.60 -13.62 3.02 -156.32 -0.47 -14.09 16 10 C 0.17 3.99 4.77 -1.68 -0.01 3.98 16 11 C 0.10 1.88 5.26 -62.44 -0.33 1.55 16 12 H 0.12 2.16 8.04 -51.93 -0.42 1.74 16 13 C -0.15 -2.47 6.81 -22.28 -0.15 -2.63 16 14 C 0.14 2.49 5.53 -62.53 -0.35 2.14 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 16 C 0.08 1.26 5.24 -1.68 -0.01 1.25 16 17 N -0.60 -10.89 2.96 -157.78 -0.47 -11.35 16 18 C 0.57 10.83 7.32 -12.40 -0.09 10.74 16 19 O -0.54 -11.87 16.71 5.31 0.09 -11.78 16 20 C -0.15 -2.39 5.48 -104.91 -0.58 -2.97 16 21 C -0.04 -0.48 8.53 -39.19 -0.33 -0.82 16 22 C -0.14 -1.31 10.03 -39.64 -0.40 -1.70 16 23 C -0.04 -0.40 9.39 -39.51 -0.37 -0.77 16 24 C -0.22 -2.48 5.74 -104.60 -0.60 -3.08 16 25 C 0.32 3.10 5.60 36.00 0.20 3.30 16 26 F -0.20 -1.93 16.47 2.25 0.04 -1.89 16 27 F -0.19 -2.39 15.48 2.25 0.03 -2.36 16 28 C 0.18 2.61 7.08 -38.96 -0.28 2.33 16 29 F -0.11 -1.82 14.46 2.25 0.03 -1.79 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 32 H 0.05 1.26 7.67 -51.93 -0.40 0.86 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.24 5.84 -51.93 -0.30 0.94 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.15 2.04 5.91 -52.49 -0.31 1.73 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.14 0.92 7.59 -52.48 -0.40 0.52 16 40 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -31.75 340.58 -7.89 -39.63 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.30 Total: 0.79 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -3.54 Total: 7.05 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.35 Total: -50.67 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.10 Total: -6.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.75 -7.89 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032407365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.957 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds