Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00452 * 2 1 4 4 H 1.48493 * 109.47247 * 269.99947 * 3 2 1 5 5 H 1.48500 * 109.46982 * 30.00190 * 3 2 1 6 6 H 1.48498 * 109.47381 * 149.99593 * 3 2 1 7 7 C 1.38819 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99990 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94301 * 0.02562 * 9 7 2 11 11 C 1.56017 * 105.10485 * 181.98173 * 10 9 7 12 12 H 1.09001 * 116.25022 * 159.68631 * 11 10 9 13 13 C 1.57082 * 99.60622 * 32.80682 * 11 10 9 14 14 C 1.49287 * 126.94800 * 179.97438 * 9 7 2 15 15 H 1.08997 * 116.15332 * 15.86452 * 14 9 7 16 16 C 1.56017 * 104.09370 * 246.71626 * 14 9 7 17 17 N 1.47862 * 105.19453 * 288.71640 * 16 14 9 18 18 C 1.34781 * 126.94560 * 182.05048 * 17 16 14 19 19 O 1.21568 * 120.00252 * 174.71202 * 18 17 16 20 20 C 1.47695 * 119.99721 * 354.71672 * 18 17 16 21 21 C 1.39666 * 120.16642 * 318.25410 * 20 18 17 22 22 C 1.37853 * 119.87773 * 179.97438 * 21 20 18 23 23 C 1.38457 * 120.21875 * 0.02562 * 22 21 20 24 24 C 1.38207 * 120.34219 * 359.97438 * 23 22 21 25 25 C 1.50698 * 119.94445 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.47001 * 30.00022 * 25 24 23 27 27 F 1.39906 * 109.47086 * 149.99855 * 25 24 23 28 28 C 1.38322 * 120.11385 * 359.73676 * 24 23 22 29 29 F 1.35098 * 120.11413 * 180.27493 * 28 24 23 30 30 H 0.97002 * 119.99558 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.31933 * 300.88904 * 10 9 7 32 32 H 1.09003 * 110.31951 * 62.97268 * 10 9 7 33 33 H 1.09001 * 112.36525 * 191.71680 * 13 11 10 34 34 H 1.08993 * 112.37042 * 64.27893 * 13 11 10 35 35 H 1.09006 * 110.30945 * 47.67832 * 16 14 9 36 36 H 1.09004 * 110.31355 * 169.75687 * 16 14 9 37 37 H 1.08002 * 120.05726 * 0.02562 * 21 20 18 38 38 H 1.07994 * 119.88774 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.83024 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47111 * 269.99949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1424 -2.5668 -0.0005 11 6 -0.3641 -4.1103 0.0521 12 1 -1.3417 -4.4454 0.3985 13 6 0.8831 -4.5250 0.9124 14 6 1.9100 -3.7618 0.0005 15 1 2.9641 -3.8354 0.2680 16 6 1.5084 -4.3456 -1.3894 17 7 0.0519 -4.5853 -1.3029 18 6 -0.7386 -5.1222 -2.2533 19 8 -1.9081 -5.3515 -2.0132 20 6 -0.1840 -5.4323 -3.5866 21 6 0.6886 -4.5370 -4.2093 22 6 1.2031 -4.8326 -5.4536 23 6 0.8574 -6.0137 -6.0880 24 6 -0.0052 -6.9061 -5.4801 25 6 -0.3760 -8.1887 -6.1790 26 9 0.6832 -8.5971 -6.9968 27 9 -0.6388 -9.1795 -5.2269 28 6 -0.5251 -6.6263 -4.2292 29 9 -1.3640 -7.5013 -3.6326 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5822 -2.0912 0.8762 32 1 -0.5736 -2.1519 -0.9116 33 1 1.0482 -5.6025 0.9109 34 1 0.8435 -4.1189 1.9230 35 1 1.7275 -3.6269 -2.1792 36 1 2.0357 -5.2816 -1.5734 37 1 0.9602 -3.6151 -3.7165 38 1 1.8782 -4.1406 -5.9350 39 1 1.2639 -6.2388 -7.0629 40 1 -1.2644 -8.0264 -6.7892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032407365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -103.075402 kcal Electronic energy + Delta-G solvation = -30080.302396 eV Core-core repulsion = 25446.656443 eV Total energy + Delta-G solvation = -4633.645953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.39133 -49.85552 -48.05429 -41.82730 -40.25073 -39.05686 -35.52791 -33.95821 -32.89554 -31.93392 -30.64739 -30.26561 -27.35569 -26.97414 -26.00122 -24.53992 -23.15211 -22.26648 -21.46996 -20.39949 -19.34146 -18.74170 -18.58262 -18.40261 -18.29180 -17.54088 -17.45502 -17.05480 -16.76141 -16.46695 -16.19358 -15.83943 -15.67279 -15.11023 -14.92345 -14.81137 -14.41882 -14.35696 -14.12072 -13.88072 -13.68805 -13.61093 -13.35138 -13.24516 -13.15341 -12.92314 -12.84374 -12.69726 -12.33275 -12.20495 -12.08227 -12.02707 -11.85959 -11.53137 -11.19684 -10.73196 -10.37471 -9.99675 -9.62754 -8.92305 -7.83620 -5.19663 -0.42852 -0.21564 1.49488 1.50328 1.50818 1.59288 1.75721 2.30511 2.49591 2.56644 2.86232 3.11956 3.15888 3.33868 3.38891 3.52714 3.70285 3.82129 3.83790 3.87994 3.91675 3.98433 4.12356 4.16657 4.40348 4.52344 4.59520 4.73418 4.73848 4.84056 4.88162 4.97664 5.00595 5.10043 5.12495 5.20492 5.44543 5.47910 5.55157 5.65373 6.09030 6.47795 6.92527 7.03122 7.71161 8.41383 9.27665 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003188 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.323391 B = 8781.263522 C = 9514.170804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.263 1.263 7 C -0.229 4.229 8 H 0.098 0.902 9 N -0.614 5.614 10 C 0.189 3.811 11 C 0.099 3.901 12 H 0.112 0.888 13 C -0.130 4.130 14 C 0.139 3.861 15 H 0.140 0.860 16 C 0.085 3.915 17 N -0.600 5.600 18 C 0.565 3.435 19 O -0.583 6.583 20 C -0.178 4.178 21 C -0.044 4.044 22 C -0.117 4.117 23 C -0.024 4.024 24 C -0.215 4.215 25 C 0.318 3.682 26 F -0.194 7.194 27 F -0.211 7.211 28 C 0.155 3.845 29 F -0.131 7.131 30 H 0.243 0.757 31 H 0.021 0.979 32 H 0.001 0.999 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -14.648 -13.597 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.188 1.188 7 C -0.357 4.357 8 H 0.116 0.884 9 N -0.339 5.339 10 C 0.063 3.937 11 C -0.004 4.004 12 H 0.130 0.870 13 C -0.170 4.170 14 C 0.032 3.968 15 H 0.157 0.843 16 C -0.039 4.039 17 N -0.332 5.332 18 C 0.354 3.646 19 O -0.465 6.465 20 C -0.182 4.182 21 C -0.063 4.063 22 C -0.134 4.134 23 C -0.042 4.042 24 C -0.217 4.217 25 C 0.265 3.735 26 F -0.176 7.176 27 F -0.193 7.193 28 C 0.134 3.866 29 F -0.109 7.109 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.019 0.981 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.157 0.843 38 H 0.197 0.803 39 H 0.201 0.799 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.441 -14.613 -13.489 20.617 hybrid contribution -0.590 1.141 0.574 1.407 sum 4.851 -13.472 -12.915 19.282 Atomic orbital electron populations 1.70151 1.06628 1.25151 1.58697 1.25632 0.96318 1.01093 1.03072 0.85103 0.77764 0.79308 0.77297 1.21508 1.23207 1.18766 1.19536 0.91305 0.82862 1.42010 0.88419 1.45483 1.01259 1.01004 1.86107 1.21508 0.85186 0.89443 0.97528 1.24299 0.99460 0.94714 0.81939 0.87022 1.24067 0.93829 1.00703 0.98358 1.23595 0.98291 0.83295 0.91607 0.84292 1.23457 0.78588 1.00634 1.01173 1.49212 1.10424 1.58752 1.14811 1.18108 0.85034 0.77198 0.84231 1.90751 1.18107 1.55850 1.81803 1.19906 1.04856 0.97281 0.96157 1.21658 0.91248 0.97633 0.95730 1.21572 1.00514 0.97847 0.93477 1.21459 0.91101 0.90933 1.00672 1.20666 1.05598 1.00573 0.94832 1.20527 0.89907 0.80584 0.82507 1.93005 1.60438 1.91372 1.72737 1.93026 1.94429 1.64783 1.67015 1.17523 0.90592 0.87089 0.91353 1.91555 1.68419 1.67340 1.83604 0.94735 0.96113 0.98054 0.88439 0.89675 0.91109 0.89122 0.84269 0.80251 0.79878 0.81892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.59 10.56 21.65 0.23 -56.36 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 3 Si 0.98 43.54 29.55 68.60 2.03 45.57 16 4 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.23 -11.52 10.37 84.04 0.87 -10.65 16 8 H 0.10 4.51 7.83 -2.91 -0.02 4.48 16 9 N -0.61 -28.14 3.02 -648.48 -1.96 -30.10 16 10 C 0.19 9.21 4.77 87.16 0.42 9.62 16 11 C 0.10 3.85 5.26 46.89 0.25 4.10 16 12 H 0.11 4.42 8.04 -2.39 -0.02 4.40 16 13 C -0.13 -4.10 6.81 33.48 0.23 -3.87 16 14 C 0.14 4.59 5.53 46.94 0.26 4.85 16 15 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 16 C 0.09 2.61 5.24 87.16 0.46 3.07 16 17 N -0.60 -22.09 2.96 -771.38 -2.28 -24.37 16 18 C 0.56 22.07 7.32 86.74 0.63 22.71 16 19 O -0.58 -27.24 16.71 -3.93 -0.07 -27.30 16 20 C -0.18 -5.48 5.48 -20.05 -0.11 -5.59 16 21 C -0.04 -1.06 8.53 22.52 0.19 -0.87 16 22 C -0.12 -1.78 10.03 22.23 0.22 -1.55 16 23 C -0.02 -0.33 9.39 22.31 0.21 -0.12 16 24 C -0.21 -4.23 5.74 -19.85 -0.11 -4.35 16 25 C 0.32 5.21 5.60 71.24 0.40 5.61 16 26 F -0.19 -3.06 16.47 44.97 0.74 -2.32 16 27 F -0.21 -4.97 15.48 44.97 0.70 -4.27 16 28 C 0.15 4.41 7.08 22.67 0.16 4.57 16 29 F -0.13 -4.42 14.46 44.97 0.65 -3.77 16 30 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.02 1.14 7.46 -2.38 -0.02 1.13 16 32 H 0.00 0.07 7.67 -2.39 -0.02 0.05 16 33 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.07 2.26 5.84 -2.38 -0.01 2.25 16 36 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.14 3.67 5.91 -2.91 -0.02 3.65 16 38 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.18 1.16 7.59 -2.91 -0.02 1.14 16 40 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.14 340.58 5.68 -69.46 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.10 Total: 9.16 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 4.54 Total: 24.31 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -4.01 Total: -110.84 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.07 Total: -27.30 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.09 Total: -10.36 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.14 5.68 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032407365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.615 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds