Wall clock time and date at job start Sat Apr 11 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86808 * 119.99768 * 2 1 4 4 H 1.48499 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46949 * 299.99989 * 3 2 1 6 6 H 1.48494 * 109.46955 * 60.00110 * 3 2 1 7 7 C 1.38810 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00335 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.46785 * 125.34013 * 180.02562 * 9 7 2 11 11 C 1.53961 * 106.62648 * 161.51904 * 10 9 7 12 12 H 1.08996 * 113.01669 * 265.72007 * 11 10 9 13 13 C 1.54103 * 109.44455 * 138.17979 * 11 10 9 14 14 N 1.46744 * 106.63425 * 278.64285 * 13 11 10 15 15 C 1.34775 * 125.33140 * 161.58621 * 14 13 11 16 16 O 1.21585 * 120.00147 * 179.69411 * 15 14 13 17 17 C 1.47545 * 119.99949 * 359.68730 * 15 14 13 18 18 C 1.39926 * 120.17376 * 89.95793 * 17 15 14 19 19 F 1.35104 * 120.07670 * 0.04638 * 18 17 15 20 20 C 1.38172 * 119.85152 * 180.02562 * 18 17 15 21 21 C 1.38334 * 120.21452 * 0.02562 * 20 18 17 22 22 C 1.38442 * 120.35903 * 0.02562 * 21 20 18 23 23 F 1.35105 * 119.93154 * 179.97438 * 22 21 20 24 24 C 1.38445 * 120.14250 * 359.95710 * 22 21 20 25 25 F 1.35103 * 120.11070 * 179.74775 * 24 22 21 26 26 C 1.46640 * 109.34193 * 341.31676 * 14 13 11 27 27 C 1.53693 * 108.00835 * 1.06692 * 26 14 13 28 28 H 1.09000 * 112.56245 * 254.08949 * 27 26 14 29 29 C 1.46671 * 125.34149 * 0.04820 * 9 7 2 30 30 H 0.96994 * 120.00015 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.02011 * 42.22911 * 10 9 7 32 32 H 1.09001 * 110.02429 * 280.81518 * 10 9 7 33 33 H 1.08994 * 110.14458 * 159.30367 * 13 11 10 34 34 H 1.09004 * 109.95666 * 37.87789 * 13 11 10 35 35 H 1.08004 * 119.89259 * 180.02562 * 20 18 17 36 36 H 1.08005 * 119.82580 * 180.02562 * 21 20 18 37 37 H 1.08996 * 109.76516 * 120.70408 * 26 14 13 38 38 H 1.08997 * 109.76506 * 241.42919 * 26 14 13 39 39 H 1.08997 * 109.77299 * 60.88266 * 29 9 7 40 40 H 1.09005 * 109.77049 * 300.12897 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9382 -3.7219 -0.0005 11 6 0.8505 -4.7061 0.4671 12 1 0.8860 -4.9029 1.5386 13 6 0.9089 -5.9826 -0.3943 14 7 0.1884 -5.6839 -1.6373 15 6 0.2957 -6.3795 -2.7867 16 8 -0.3533 -6.0487 -3.7602 17 6 1.2007 -7.5422 -2.8637 18 6 0.7311 -8.8212 -2.5449 19 9 -0.5540 -8.9958 -2.1662 20 6 1.5845 -9.9054 -2.6188 21 6 2.9009 -9.7300 -3.0061 22 6 3.3750 -8.4683 -3.3224 23 9 4.6624 -8.3069 -3.6991 24 6 2.5327 -7.3717 -3.2538 25 9 2.9974 -6.1401 -3.5577 26 6 -0.6714 -4.5141 -1.4312 27 6 -0.4700 -4.0247 0.0118 28 1 -1.3139 -4.2677 0.6574 29 6 -0.1346 -2.5245 -0.0010 30 1 -0.4850 0.8400 0.0004 31 1 2.7831 -3.7447 0.6878 32 1 2.2686 -3.9810 -1.0065 33 1 0.4267 -6.8095 0.1269 34 1 1.9460 -6.2348 -0.6157 35 1 1.2227 -10.8929 -2.3733 36 1 3.5624 -10.5819 -3.0621 37 1 -0.3939 -3.7250 -2.1300 38 1 -1.7143 -4.7917 -1.5839 39 1 -0.5479 -2.0621 -0.8973 40 1 -0.5500 -2.0460 0.8860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049016377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:30 Heat of formation + Delta-G solvation = -98.921670 kcal Electronic energy + Delta-G solvation = -30246.831991 eV Core-core repulsion = 25613.366157 eV Total energy + Delta-G solvation = -4633.465834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.87160 -49.47462 -48.93557 -40.49977 -39.08292 -37.97486 -35.07731 -32.49996 -31.75745 -30.53173 -30.15909 -29.67598 -26.10531 -25.56793 -24.52497 -23.38179 -22.81926 -20.26877 -20.10803 -19.48741 -18.68247 -18.33784 -18.05211 -17.15560 -16.87491 -16.58200 -16.25821 -15.90953 -15.79714 -15.56189 -15.27339 -14.95367 -14.80682 -14.73052 -14.27065 -13.70468 -13.57600 -13.32723 -13.14197 -12.97467 -12.52714 -12.31798 -12.22807 -12.10433 -11.85138 -11.75874 -11.52139 -10.92971 -10.83568 -10.49499 -10.15987 -10.06664 -10.05783 -9.93429 -9.69638 -9.62797 -9.13684 -8.64965 -8.53424 -6.85557 -5.74118 -3.07573 0.11764 0.24746 2.29484 2.51905 2.83538 3.15803 3.39631 3.45462 3.47721 3.49406 3.89830 3.90206 4.17251 4.26524 4.46805 4.68044 4.82416 4.96336 5.06958 5.16654 5.19873 5.25246 5.39639 5.41361 5.48660 5.53695 5.62772 5.72281 5.87940 6.04905 6.07464 6.18703 6.26744 6.38351 6.56511 6.63429 6.79502 7.42012 7.53738 7.54053 7.78517 7.97231 8.23929 9.20355 9.80508 10.43867 11.37726 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.003419 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.718639 B = 8186.730341 C = 9070.311505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.108 4.108 12 H 0.102 0.898 13 C 0.107 3.893 14 N -0.592 5.592 15 C 0.576 3.424 16 O -0.518 6.518 17 C -0.161 4.161 18 C 0.154 3.846 19 F -0.115 7.115 20 C -0.135 4.135 21 C -0.083 4.083 22 C 0.059 3.941 23 F -0.119 7.119 24 C 0.133 3.867 25 F -0.104 7.104 26 C 0.118 3.882 27 C -0.122 4.122 28 H 0.091 0.909 29 C 0.187 3.813 30 H 0.252 0.748 31 H 0.036 0.964 32 H 0.018 0.982 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -23.485 -1.807 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.017 3.983 11 C -0.128 4.128 12 H 0.120 0.880 13 C -0.016 4.016 14 N -0.324 5.324 15 C 0.361 3.639 16 O -0.394 6.394 17 C -0.166 4.166 18 C 0.134 3.866 19 F -0.093 7.093 20 C -0.154 4.154 21 C -0.101 4.101 22 C 0.039 3.961 23 F -0.097 7.097 24 C 0.112 3.888 25 F -0.082 7.082 26 C -0.004 4.004 27 C -0.141 4.141 28 H 0.110 0.890 29 C 0.062 3.938 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.674 -23.025 -2.414 23.306 hybrid contribution 0.577 1.120 -0.084 1.262 sum 3.251 -21.906 -2.498 22.286 Atomic orbital electron populations 1.69951 1.04862 1.25026 1.57123 1.24793 0.95739 0.97699 1.02069 0.86034 0.78733 0.83692 0.77247 1.20507 1.21718 1.21719 1.19090 0.90506 0.82278 1.43822 0.90345 1.44219 1.01426 0.99940 1.87233 1.21255 0.93823 0.85884 0.97326 1.22960 0.97333 0.93313 0.99152 0.87960 1.22061 0.96479 0.98354 0.84728 1.48181 1.43590 1.30057 1.10587 1.17128 0.82219 0.81899 0.82640 1.90853 1.45407 1.68043 1.35125 1.19874 0.93840 0.95216 1.07687 1.17266 0.79926 0.91689 0.97744 1.91603 1.34028 1.95749 1.87961 1.21001 0.92612 0.99141 1.02663 1.21028 0.96002 0.95647 0.97468 1.17462 0.80019 0.93199 1.05425 1.91588 1.33134 1.96161 1.88812 1.17278 0.90437 0.80667 1.00441 1.91666 1.88163 1.38602 1.89732 1.22105 0.93507 0.86651 0.98097 1.23169 0.97073 1.00229 0.93678 0.89037 1.21052 0.84653 0.86390 1.01728 0.93722 0.94564 0.96482 0.91406 0.91152 0.82164 0.82018 0.90133 0.91610 0.93168 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.25 55.49 0.57 -26.19 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.35 10.25 -15.06 -0.15 -6.50 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.09 3.38 -171.84 -0.58 -15.67 16 10 C 0.14 2.89 6.49 -3.39 -0.02 2.87 16 11 C -0.11 -1.71 4.16 -88.26 -0.37 -2.08 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 13 C 0.11 1.46 5.76 -3.33 -0.02 1.44 16 14 N -0.59 -9.70 3.30 -173.50 -0.57 -10.28 16 15 C 0.58 9.82 6.56 -12.47 -0.08 9.74 16 16 O -0.52 -10.66 17.41 5.29 0.09 -10.57 16 17 C -0.16 -2.13 4.58 -104.87 -0.48 -2.61 16 18 C 0.15 1.58 7.29 -38.97 -0.28 1.30 16 19 F -0.12 -1.31 16.83 2.25 0.04 -1.27 16 20 C -0.14 -0.86 10.01 -39.57 -0.40 -1.26 16 21 C -0.08 -0.51 10.01 -39.47 -0.40 -0.90 16 22 C 0.06 0.58 7.29 -39.43 -0.29 0.29 16 23 F -0.12 -1.26 17.18 2.25 0.04 -1.22 16 24 C 0.13 1.70 7.30 -38.90 -0.28 1.41 16 25 F -0.10 -1.62 16.74 2.25 0.04 -1.59 16 26 C 0.12 2.09 6.22 -3.61 -0.02 2.07 16 27 C -0.12 -2.13 4.01 -88.60 -0.36 -2.49 16 28 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 29 C 0.19 4.36 4.77 -3.57 -0.02 4.34 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.37 7.72 -51.93 -0.40 -0.03 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.90 7.63 -51.93 -0.40 0.50 16 35 H 0.16 0.50 8.06 -52.48 -0.42 0.08 16 36 H 0.16 0.45 8.06 -52.48 -0.42 0.03 16 37 H 0.08 1.68 7.29 -51.93 -0.38 1.30 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.32 6.73 -51.93 -0.35 0.97 16 40 H 0.05 1.30 7.38 -51.93 -0.38 0.91 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -33.31 345.86 -7.87 -41.17 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.41 Total: -4.07 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -3.26 Total: 7.33 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.59 Total: -52.13 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.11 Total: -4.08 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.31 -7.87 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049016377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.750 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds