Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99758 * 2 1 4 4 H 1.48504 * 109.46899 * 264.99825 * 3 2 1 5 5 H 1.48497 * 109.47164 * 24.99861 * 3 2 1 6 6 H 1.48491 * 109.46925 * 144.99977 * 3 2 1 7 7 C 1.38806 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00601 * 185.21373 * 7 2 1 9 9 N 1.36937 * 119.99933 * 5.21367 * 7 2 1 10 10 C 1.46779 * 125.33976 * 185.08431 * 9 7 2 11 11 C 1.53972 * 106.62751 * 161.52175 * 10 9 7 12 12 H 1.09000 * 113.00974 * 265.71904 * 11 10 9 13 13 C 1.53923 * 109.25369 * 138.18838 * 11 10 9 14 14 N 1.46749 * 106.72024 * 278.36443 * 13 11 10 15 15 C 1.34777 * 125.32726 * 161.92622 * 14 13 11 16 16 O 1.21592 * 119.99712 * 175.72347 * 15 14 13 17 17 C 1.47567 * 120.00281 * 355.72466 * 15 14 13 18 18 C 1.39752 * 120.13279 * 36.62677 * 17 15 14 19 19 C 1.37919 * 119.87825 * 180.02562 * 18 17 15 20 20 F 1.35107 * 119.92598 * 179.97438 * 19 18 17 21 21 C 1.38939 * 120.14577 * 359.97438 * 19 18 17 22 22 F 1.35099 * 119.86771 * 180.02562 * 21 19 18 23 23 C 1.38452 * 120.26915 * 0.02562 * 21 19 18 24 24 C 1.38213 * 120.11674 * 359.72367 * 23 21 19 25 25 F 1.35101 * 120.07586 * 180.29528 * 24 23 21 26 26 C 1.46640 * 109.34203 * 341.66006 * 14 13 11 27 27 C 1.53695 * 108.00592 * 0.83496 * 26 14 13 28 28 H 1.09000 * 112.55878 * 254.09144 * 27 26 14 29 29 C 1.46675 * 125.33689 * 5.12645 * 9 7 2 30 30 H 0.96999 * 119.99924 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.02800 * 42.22522 * 10 9 7 32 32 H 1.09001 * 110.02267 * 280.80552 * 10 9 7 33 33 H 1.08996 * 110.01132 * 159.04593 * 13 11 10 34 34 H 1.09003 * 110.01037 * 37.67755 * 13 11 10 35 35 H 1.08006 * 120.06131 * 359.97438 * 18 17 15 36 36 H 1.07997 * 119.94305 * 179.97438 * 23 21 19 37 37 H 1.08994 * 109.76372 * 120.47623 * 26 14 13 38 38 H 1.09002 * 109.75806 * 241.19939 * 26 14 13 39 39 H 1.08997 * 109.77050 * 60.88994 * 29 9 7 40 40 H 1.08997 * 109.76965 * 300.12703 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6034 1.9854 -1.3948 5 1 1.3988 2.6809 0.5917 6 1 3.4908 1.4731 0.8030 7 6 2.0103 -1.2021 0.0005 8 1 3.0870 -1.2040 0.0855 9 7 1.3300 -2.3856 -0.1067 10 6 1.9305 -3.7216 -0.0131 11 6 0.7801 -4.7023 0.2794 12 1 0.6485 -4.8997 1.3433 13 6 0.9713 -5.9752 -0.5647 14 7 0.4487 -5.6768 -1.9031 15 6 0.7270 -6.3749 -3.0219 16 8 0.1787 -6.0891 -4.0689 17 6 1.6969 -7.4860 -2.9762 18 6 1.7611 -8.3155 -1.8533 19 6 2.6700 -9.3522 -1.8160 20 9 2.7333 -10.1544 -0.7307 21 6 3.5207 -9.5734 -2.8920 22 9 4.4086 -10.5908 -2.8497 23 6 3.4623 -8.7553 -4.0075 24 6 2.5521 -7.7165 -4.0587 25 9 2.4918 -6.9224 -5.1501 26 6 -0.4287 -4.5040 -1.8315 27 6 -0.4516 -4.0160 -0.3743 28 1 -1.3862 -4.2564 0.1326 29 6 -0.1131 -2.5170 -0.3340 30 1 -0.4850 0.8400 -0.0004 31 1 2.6585 -3.7477 0.7978 32 1 2.4118 -3.9814 -0.9559 33 1 0.4156 -6.8024 -0.1232 34 1 2.0301 -6.2270 -0.6253 35 1 1.1008 -8.1446 -1.0159 36 1 4.1263 -8.9318 -4.8407 37 1 -0.0436 -3.7156 -2.4781 38 1 -1.4363 -4.7780 -2.1443 39 1 -0.3805 -2.0530 -1.2833 40 1 -0.6594 -2.0373 0.4781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049016986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -96.485540 kcal Electronic energy + Delta-G solvation = -29774.020695 eV Core-core repulsion = 25140.660500 eV Total energy + Delta-G solvation = -4633.360195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.99357 -49.32957 -49.05010 -40.72344 -39.04780 -37.91866 -35.16919 -32.60657 -31.76949 -30.64760 -30.11873 -29.71870 -25.99291 -25.70643 -24.59911 -23.55140 -22.73049 -20.29636 -20.22699 -19.54203 -18.66904 -18.48040 -17.85545 -17.11420 -16.95653 -16.62216 -16.13547 -16.12424 -15.70859 -15.42655 -15.30112 -15.08026 -14.82853 -14.68057 -14.38458 -13.96122 -13.70202 -13.43148 -13.14070 -12.85172 -12.74727 -12.37285 -12.15820 -12.08638 -11.87719 -11.76607 -11.47804 -10.95486 -10.84817 -10.51069 -10.17754 -10.11912 -10.04477 -9.98900 -9.73094 -9.71246 -9.13820 -8.68638 -8.56557 -6.88749 -5.76247 -3.12320 -0.03474 0.27814 2.22917 2.70731 2.97230 3.11265 3.37848 3.43052 3.44311 3.46326 3.81797 3.82750 4.07860 4.36909 4.44285 4.63412 4.77795 4.93929 4.98674 5.03474 5.16095 5.23853 5.33819 5.38154 5.44160 5.48975 5.57019 5.68532 5.83693 5.99676 6.05152 6.14396 6.22868 6.35069 6.52567 6.59307 6.73998 7.37067 7.44260 7.56891 7.74645 7.98841 8.21534 9.16333 9.77003 10.40153 11.33571 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.002951 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.625006 B = 9486.312581 C = 9591.718342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.143 3.857 11 C -0.109 4.109 12 H 0.103 0.897 13 C 0.101 3.899 14 N -0.597 5.597 15 C 0.571 3.429 16 O -0.520 6.520 17 C -0.140 4.140 18 C -0.072 4.072 19 C 0.055 3.945 20 F -0.119 7.119 21 C 0.120 3.880 22 F -0.116 7.116 23 C -0.171 4.171 24 C 0.178 3.822 25 F -0.104 7.104 26 C 0.118 3.882 27 C -0.121 4.121 28 H 0.092 0.908 29 C 0.182 3.818 30 H 0.253 0.747 31 H 0.037 0.963 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -20.595 -2.642 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.095 0.905 9 N -0.327 5.327 10 C 0.017 3.983 11 C -0.129 4.129 12 H 0.121 0.879 13 C -0.022 4.022 14 N -0.329 5.329 15 C 0.359 3.641 16 O -0.397 6.397 17 C -0.144 4.144 18 C -0.091 4.091 19 C 0.034 3.966 20 F -0.098 7.098 21 C 0.099 3.901 22 F -0.094 7.094 23 C -0.191 4.191 24 C 0.157 3.843 25 F -0.082 7.082 26 C -0.003 4.003 27 C -0.141 4.141 28 H 0.110 0.890 29 C 0.057 3.943 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.033 -20.255 -3.264 20.740 hybrid contribution 0.704 0.629 0.019 0.945 sum 3.737 -19.626 -3.245 20.240 Atomic orbital electron populations 1.69927 1.04894 1.25210 1.56722 1.24803 0.95707 0.97748 1.01952 0.86132 0.78569 0.83307 0.77715 1.21518 1.21638 1.20709 1.19017 0.90673 0.82431 1.43836 0.90456 1.44205 1.03672 0.99925 1.84904 1.21269 0.93460 0.85899 0.97669 1.22965 0.97502 0.93375 0.99072 0.87891 1.22279 0.99142 0.98314 0.82505 1.48135 1.47254 1.30206 1.07352 1.17303 0.82018 0.81651 0.83172 1.90866 1.51533 1.68025 1.29285 1.19925 1.00179 0.99812 0.94491 1.21421 0.97201 0.92046 0.98471 1.17382 1.00008 0.94031 0.85149 1.91585 1.95584 1.71347 1.51260 1.17407 0.90337 0.88150 0.94202 1.91589 1.65258 1.56072 1.96454 1.20911 1.02311 0.95971 0.99868 1.17176 0.94397 0.89318 0.83376 1.91652 1.94866 1.71284 1.50380 1.22095 0.93342 0.86545 0.98330 1.23161 0.97909 1.00131 0.92904 0.89012 1.21106 0.85337 0.86671 1.01158 0.93635 0.94514 0.96571 0.91340 0.90456 0.81451 0.81551 0.90294 0.91606 0.94409 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.16 10.34 55.49 0.57 -25.59 16 2 C -0.01 -0.15 5.46 -17.43 -0.10 -0.25 16 3 Si 0.91 21.74 29.56 -169.99 -5.02 16.71 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.26 10.24 -15.06 -0.15 -6.42 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.55 3.38 -171.83 -0.58 -15.13 16 10 C 0.14 2.73 6.48 -3.38 -0.02 2.71 16 11 C -0.11 -1.60 4.17 -88.35 -0.37 -1.97 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 13 C 0.10 1.18 4.34 -3.43 -0.01 1.16 16 14 N -0.60 -8.67 3.30 -173.59 -0.57 -9.24 16 15 C 0.57 8.69 7.40 -12.46 -0.09 8.60 16 16 O -0.52 -9.78 16.43 5.29 0.09 -9.70 16 17 C -0.14 -1.65 5.51 -104.92 -0.58 -2.22 16 18 C -0.07 -0.66 8.00 -39.13 -0.31 -0.97 16 19 C 0.05 0.49 7.29 -39.44 -0.29 0.21 16 20 F -0.12 -1.14 17.17 2.25 0.04 -1.10 16 21 C 0.12 1.06 7.31 -39.24 -0.29 0.77 16 22 F -0.12 -1.06 17.17 2.25 0.04 -1.02 16 23 C -0.17 -1.45 9.99 -39.51 -0.39 -1.85 16 24 C 0.18 2.01 7.24 -38.98 -0.28 1.73 16 25 F -0.10 -1.41 16.14 2.25 0.04 -1.37 16 26 C 0.12 1.93 6.22 -3.60 -0.02 1.91 16 27 C -0.12 -1.99 4.02 -88.60 -0.36 -2.35 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 C 0.18 4.10 4.82 -3.57 -0.02 4.08 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.33 7.71 -51.93 -0.40 -0.07 16 33 H 0.07 0.59 6.79 -51.93 -0.35 0.24 16 34 H 0.08 0.83 6.76 -51.93 -0.35 0.47 16 35 H 0.17 1.25 5.27 -52.48 -0.28 0.97 16 36 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.08 1.53 7.29 -51.93 -0.38 1.16 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.04 0.95 7.14 -51.93 -0.37 0.58 16 40 H 0.06 1.62 6.96 -51.93 -0.36 1.25 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -31.51 337.99 -7.75 -39.26 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.15 Total: -3.04 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -3.28 Total: 5.14 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.58 Total: -49.97 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.11 Total: -3.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.51 -7.75 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049016986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.228 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds