Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99784 * 2 1 4 4 H 1.48504 * 109.47043 * 239.99960 * 3 2 1 5 5 H 1.48496 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46731 * 120.00027 * 3 2 1 7 7 C 1.38814 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00156 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.48645 * 125.09198 * 359.95220 * 9 7 2 11 11 C 1.53933 * 105.77082 * 198.22306 * 10 9 7 12 12 H 1.08995 * 113.01385 * 208.78476 * 11 10 9 13 13 C 1.53966 * 109.24822 * 82.04389 * 11 10 9 14 14 N 1.46781 * 106.62340 * 221.02576 * 13 11 10 15 15 C 1.34782 * 125.33715 * 198.51763 * 14 13 11 16 16 O 1.21570 * 119.99747 * 354.58244 * 15 14 13 17 17 C 1.47732 * 120.00012 * 174.58398 * 15 14 13 18 18 C 1.39629 * 120.09690 * 7.59262 * 17 15 14 19 19 C 1.38081 * 119.89000 * 179.79551 * 18 17 15 20 20 F 1.35102 * 119.94399 * 180.25527 * 19 18 17 21 21 C 1.38778 * 120.10296 * 0.48646 * 19 18 17 22 22 F 1.35106 * 119.89711 * 179.72422 * 21 19 18 23 23 C 1.38785 * 120.20663 * 359.74570 * 21 19 18 24 24 F 1.35099 * 119.95475 * 180.02562 * 23 21 19 25 25 C 1.38075 * 120.09575 * 0.02562 * 23 21 19 26 26 C 1.46661 * 109.32718 * 18.51655 * 14 13 11 27 27 C 1.53730 * 107.94120 * 359.45379 * 26 14 13 28 28 H 1.08998 * 113.05953 * 219.99720 * 27 26 14 29 29 C 1.46640 * 125.32621 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00287 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.12834 * 79.39572 * 10 9 7 32 32 H 1.08997 * 110.81180 * 317.41386 * 10 9 7 33 33 H 1.08998 * 110.03079 * 340.31325 * 13 11 10 34 34 H 1.08997 * 110.02720 * 101.73424 * 13 11 10 35 35 H 1.07991 * 120.05609 * 0.02562 * 18 17 15 36 36 H 1.08002 * 120.04809 * 179.97438 * 25 23 21 37 37 H 1.09001 * 109.77558 * 239.83673 * 26 14 13 38 38 H 1.09003 * 109.77366 * 119.07346 * 26 14 13 39 39 H 1.08996 * 109.76134 * 59.52525 * 29 9 7 40 40 H 1.08999 * 109.76037 * 298.80311 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1550 -2.5200 0.0010 11 6 -0.4466 -3.9588 0.4641 12 1 -1.3771 -4.3564 0.0590 13 6 -0.3848 -4.0196 2.0013 14 7 0.3051 -5.2688 2.3447 15 6 0.2626 -5.8779 3.5463 16 8 -0.3044 -5.3430 4.4792 17 6 0.9050 -7.1955 3.7296 18 6 1.6900 -7.7396 2.7110 19 6 2.2919 -8.9696 2.8886 20 9 3.0558 -9.4947 1.9058 21 6 2.1094 -9.6693 4.0731 22 9 2.6958 -10.8749 4.2402 23 6 1.3262 -9.1346 5.0864 24 9 1.1524 -9.8199 6.2376 25 6 0.7242 -7.9032 4.9196 26 6 1.0480 -5.7503 1.1754 27 6 0.8080 -4.7624 0.0222 28 1 0.6752 -5.2549 -0.9411 29 6 1.9378 -3.7206 0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5456 -2.3655 -1.0048 32 1 -0.6071 -1.8073 0.6907 33 1 0.1738 -3.1666 2.3865 34 1 -1.3930 -4.0239 2.4155 35 1 1.8291 -7.1977 1.7874 36 1 0.1145 -7.4881 5.7085 37 1 0.6901 -6.7404 0.8932 38 1 2.1121 -5.7949 1.4073 39 1 2.5644 -3.8383 0.8846 40 1 2.5407 -3.8491 -0.8984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049076733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -76.303052 kcal Electronic energy + Delta-G solvation = -29533.292046 eV Core-core repulsion = 24900.807029 eV Total energy + Delta-G solvation = -4632.485017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.16558 -49.56117 -48.84560 -40.93750 -39.07106 -37.87378 -35.24379 -32.58424 -31.59549 -31.08948 -29.99302 -29.75070 -26.10743 -25.85740 -24.48518 -23.63499 -22.77512 -20.46301 -20.28403 -19.55523 -18.63215 -18.23552 -18.14564 -17.19450 -17.05793 -16.70850 -16.15955 -15.84894 -15.71691 -15.55090 -15.33149 -15.29000 -14.80025 -14.74999 -14.66369 -13.83710 -13.72569 -13.33167 -13.11205 -12.95609 -12.78790 -12.30789 -12.21774 -12.06998 -11.86175 -11.59860 -11.39427 -11.05017 -10.85541 -10.50375 -10.24029 -10.15909 -10.07758 -9.93699 -9.68917 -9.45388 -9.39991 -8.71240 -8.62016 -6.93545 -5.76563 -3.14995 -0.09687 0.28333 2.17262 2.68054 2.95576 3.13165 3.36697 3.41555 3.42382 3.66994 3.71298 3.88618 3.99123 4.38434 4.43063 4.55818 4.71417 4.89249 4.95756 5.03150 5.21064 5.23104 5.30256 5.37822 5.43198 5.46896 5.59508 5.66087 5.76706 5.98565 6.05411 6.15754 6.23791 6.31374 6.53359 6.59953 6.68090 7.30315 7.42832 7.53228 7.72543 7.96136 8.19625 9.11581 9.73445 10.35626 11.30755 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.002722 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.129783 B =10284.612676 C =10735.651019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.173 3.827 11 C -0.123 4.123 12 H 0.089 0.911 13 C 0.119 3.881 14 N -0.597 5.597 15 C 0.570 3.430 16 O -0.527 6.527 17 C -0.075 4.075 18 C -0.144 4.144 19 C 0.095 3.905 20 F -0.115 7.115 21 C 0.051 3.949 22 F -0.114 7.114 23 C 0.092 3.908 24 F -0.116 7.116 25 C -0.079 4.079 26 C 0.093 3.907 27 C -0.110 4.110 28 H 0.100 0.900 29 C 0.144 3.856 30 H 0.254 0.746 31 H 0.025 0.975 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.194 0.806 36 H 0.167 0.833 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -19.057 4.579 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.048 3.952 11 C -0.143 4.143 12 H 0.107 0.893 13 C -0.002 4.002 14 N -0.329 5.329 15 C 0.358 3.642 16 O -0.405 6.405 17 C -0.078 4.078 18 C -0.162 4.162 19 C 0.075 3.925 20 F -0.093 7.093 21 C 0.029 3.971 22 F -0.093 7.093 23 C 0.071 3.929 24 F -0.094 7.094 25 C -0.098 4.098 26 C -0.030 4.030 27 C -0.129 4.129 28 H 0.119 0.881 29 C 0.018 3.982 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.210 0.790 36 H 0.185 0.815 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.041 0.959 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.538 -18.644 5.158 19.352 hybrid contribution 0.839 0.197 -0.005 0.862 sum 1.376 -18.447 5.153 19.202 Atomic orbital electron populations 1.69824 1.04869 1.25204 1.57168 1.24770 0.95736 0.97723 1.02078 0.86167 0.78460 0.83029 0.77913 1.21190 1.21540 1.21134 1.19004 0.90463 0.82376 1.43771 0.90504 1.44647 1.01429 0.99734 1.87204 1.21745 0.84499 0.89064 0.99898 1.23296 0.97017 1.00602 0.93399 0.89306 1.22169 0.97205 0.85235 0.95575 1.48199 1.48745 1.25658 1.10269 1.17425 0.80811 0.83976 0.81976 1.90829 1.44821 1.65645 1.39214 1.19640 0.98864 0.95686 0.93634 1.23005 0.96126 0.93991 1.03110 1.17198 0.96346 0.93689 0.85318 1.91598 1.72527 1.86030 1.59132 1.17864 1.00084 0.84222 0.94911 1.91578 1.81700 1.40443 1.95539 1.17118 1.00434 0.92325 0.82984 1.91591 1.93733 1.78600 1.45463 1.21238 0.98625 0.91379 0.98595 1.22512 0.96196 0.97919 0.86370 1.22825 0.97577 0.95618 0.96887 0.88142 1.21182 0.93135 0.85713 0.98191 0.93543 0.95718 0.88342 0.89655 0.90952 0.78998 0.81502 0.90549 0.90031 0.95874 0.95734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.54 10.15 55.49 0.56 -24.98 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.00 10.25 -15.06 -0.15 -6.15 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.05 3.41 -170.38 -0.58 -14.63 16 10 C 0.17 3.73 4.90 -2.37 -0.01 3.72 16 11 C -0.12 -1.96 4.11 -88.35 -0.36 -2.32 16 12 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.12 1.94 6.09 -3.39 -0.02 1.92 16 14 N -0.60 -8.31 3.31 -178.79 -0.59 -8.90 16 15 C 0.57 8.06 7.79 -12.38 -0.10 7.97 16 16 O -0.53 -9.17 16.69 5.30 0.09 -9.08 16 17 C -0.07 -0.82 5.87 -104.98 -0.62 -1.43 16 18 C -0.14 -1.34 8.53 -39.12 -0.33 -1.67 16 19 C 0.09 0.91 7.29 -39.44 -0.29 0.63 16 20 F -0.11 -1.15 17.17 2.25 0.04 -1.11 16 21 C 0.05 0.52 7.32 -39.18 -0.29 0.23 16 22 F -0.11 -1.26 17.09 2.25 0.04 -1.22 16 23 C 0.09 0.91 7.29 -39.44 -0.29 0.62 16 24 F -0.12 -1.20 17.17 2.25 0.04 -1.16 16 25 C -0.08 -0.79 9.56 -39.12 -0.37 -1.16 16 26 C 0.09 1.04 4.28 -3.57 -0.02 1.02 16 27 C -0.11 -1.52 4.02 -88.60 -0.36 -1.87 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 29 C 0.14 2.60 6.61 -3.60 -0.02 2.58 16 30 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 33 H 0.09 1.68 7.72 -51.93 -0.40 1.28 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.19 1.57 2.74 -59.36 -0.16 1.41 16 36 H 0.17 1.60 7.67 -52.49 -0.40 1.20 16 37 H 0.08 0.64 6.63 -51.93 -0.34 0.30 16 38 H 0.08 0.83 6.06 -51.93 -0.31 0.52 16 39 H 0.02 0.43 7.29 -51.93 -0.38 0.05 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -29.63 336.29 -7.66 -37.30 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -3.98 Total: -1.40 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -3.32 Total: 3.79 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.61 Total: -48.52 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.12 Total: -3.49 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.63 -7.66 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049076733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.007 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds