Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 119.99745 * 2 1 4 4 H 1.48503 * 109.46870 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46928 * 299.99587 * 3 2 1 6 6 H 1.48497 * 109.47211 * 59.99530 * 3 2 1 7 7 C 1.38815 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00068 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.47548 * 125.66026 * 359.97438 * 9 7 2 11 11 C 1.55150 * 105.00989 * 203.91532 * 10 9 7 12 12 C 1.53921 * 101.43428 * 324.38266 * 11 10 9 13 13 C 1.52556 * 115.97033 * 163.60439 * 12 11 10 14 14 N 1.47851 * 85.66702 * 94.97951 * 13 12 11 15 15 C 1.34768 * 134.36898 * 203.62629 * 14 13 12 16 16 O 1.21582 * 120.00538 * 174.64642 * 15 14 13 17 17 C 1.47579 * 119.99700 * 354.65166 * 15 14 13 18 18 C 1.39735 * 120.13080 * 335.32798 * 17 15 14 19 19 C 1.37762 * 119.94514 * 180.02562 * 18 17 15 20 20 C 1.38713 * 120.20934 * 359.97438 * 19 18 17 21 21 F 1.35101 * 119.85897 * 180.02562 * 20 19 18 22 22 C 1.38655 * 120.27139 * 0.02562 * 20 19 18 23 23 F 1.35104 * 119.97485 * 179.97438 * 22 20 19 24 24 C 1.38388 * 120.05067 * 359.72130 * 22 20 19 25 25 F 1.35099 * 120.10545 * 180.27177 * 24 22 20 26 26 C 1.47856 * 91.27055 * 23.62837 * 14 13 12 27 27 C 1.47367 * 125.65898 * 179.97438 * 9 7 2 28 28 H 0.96998 * 120.00336 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.33363 * 322.80066 * 10 9 7 30 30 H 1.09002 * 110.32875 * 84.92562 * 10 9 7 31 31 H 1.09001 * 111.03418 * 82.39302 * 11 10 9 32 32 H 1.08997 * 111.03772 * 206.32693 * 11 10 9 33 33 H 1.08999 * 113.84163 * 209.16554 * 13 12 11 34 34 H 1.08999 * 113.84394 * 340.79134 * 13 12 11 35 35 H 1.07997 * 120.03243 * 359.97438 * 18 17 15 36 36 H 1.07998 * 119.88975 * 180.02562 * 19 18 17 37 37 H 1.08998 * 113.83914 * 222.18902 * 26 14 13 38 38 H 1.09003 * 113.95801 * 90.57003 * 26 14 13 39 39 H 1.08993 * 109.97985 * 297.31657 * 27 9 7 40 40 H 1.09005 * 109.97926 * 58.57645 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1426 -2.5336 0.0005 11 6 -0.4073 -3.9365 0.6080 12 6 0.7832 -4.7389 0.0531 13 6 1.0744 -6.0669 0.7452 14 7 0.2523 -6.6752 -0.3225 15 6 -0.4557 -7.8168 -0.4319 16 8 -1.1314 -8.0207 -1.4219 17 6 -0.4109 -8.8193 0.6502 18 6 0.6897 -8.8753 1.5094 19 6 0.7277 -9.8131 2.5179 20 6 -0.3237 -10.7025 2.6840 21 9 -0.2792 -11.6189 3.6756 22 6 -1.4201 -10.6548 1.8365 23 9 -2.4406 -11.5242 2.0034 24 6 -1.4722 -9.7138 0.8231 25 9 -2.5424 -9.6627 0.0001 26 6 0.5162 -5.5322 -1.2225 27 6 1.9331 -3.7307 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5998 -1.7608 0.6185 30 1 -0.5284 -2.4810 -1.0176 31 1 -0.3818 -3.9023 1.6972 32 1 -1.3537 -4.3443 0.2531 33 1 2.1240 -6.3593 0.7136 34 1 0.6369 -6.1506 1.7400 35 1 1.5101 -8.1846 1.3825 36 1 1.5786 -9.8553 3.1817 37 1 -0.3606 -5.1953 -1.7755 38 1 1.3954 -5.6600 -1.8540 39 1 2.5149 -3.8762 -0.9096 40 1 2.5733 -3.8499 0.8747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072926721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -62.790444 kcal Electronic energy + Delta-G solvation = -29174.843748 eV Core-core repulsion = 24542.944682 eV Total energy + Delta-G solvation = -4631.899066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.17114 -49.57176 -48.82218 -40.94696 -39.33273 -37.95500 -35.74640 -32.44012 -31.50125 -31.15423 -29.49112 -28.64330 -26.51230 -25.97114 -24.43150 -23.64294 -23.43475 -20.55192 -20.12533 -18.90564 -18.44621 -18.33874 -18.00961 -17.22921 -16.86369 -16.64335 -16.35206 -16.04847 -15.83130 -15.60575 -15.26283 -15.02693 -14.86123 -14.76130 -14.43052 -14.05670 -13.82178 -13.63328 -13.19925 -12.67070 -12.66081 -12.37489 -12.36591 -12.18460 -12.01591 -11.78059 -11.29045 -11.03020 -10.85848 -10.59375 -10.17734 -10.11755 -9.98851 -9.89329 -9.63070 -9.47364 -9.46485 -8.75394 -8.70373 -6.91912 -5.71933 -3.14163 -0.11897 0.20952 2.17595 2.46644 2.86101 2.99470 3.35756 3.41252 3.43926 3.62086 3.70633 3.80640 3.91905 4.15197 4.40148 4.50129 4.70619 4.85517 4.97366 5.05629 5.16712 5.22192 5.29592 5.33409 5.33929 5.44731 5.53788 5.66991 5.76369 5.79395 6.00368 6.04040 6.18558 6.40263 6.48737 6.58090 6.63281 7.43384 7.52806 7.55843 7.78549 7.91111 8.28325 9.14581 9.75415 10.39236 11.32036 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002409 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.268309 B =11620.136668 C =12067.019742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.120 4.120 12 C -0.101 4.101 13 C 0.105 3.895 14 N -0.631 5.631 15 C 0.578 3.422 16 O -0.524 6.524 17 C -0.144 4.144 18 C -0.039 4.039 19 C -0.141 4.141 20 C 0.120 3.880 21 F -0.115 7.115 22 C 0.023 3.977 23 F -0.114 7.114 24 C 0.154 3.846 25 F -0.096 7.096 26 C 0.129 3.871 27 C 0.152 3.848 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.014 0.986 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 -20.518 6.180 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.029 3.971 11 C -0.159 4.159 12 C -0.103 4.103 13 C -0.017 4.017 14 N -0.366 5.366 15 C 0.366 3.634 16 O -0.401 6.401 17 C -0.148 4.148 18 C -0.058 4.058 19 C -0.160 4.160 20 C 0.099 3.901 21 F -0.093 7.093 22 C 0.002 3.998 23 F -0.092 7.092 24 C 0.132 3.868 25 F -0.074 7.074 26 C 0.008 3.992 27 C 0.026 3.974 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.177 0.823 36 H 0.180 0.820 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.706 -20.635 5.619 21.455 hybrid contribution 0.061 0.340 0.051 0.350 sum 1.766 -20.295 5.671 21.146 Atomic orbital electron populations 1.69795 1.04913 1.24788 1.57422 1.24796 0.95715 0.97772 1.02290 0.86009 0.78639 0.83602 0.77278 1.20513 1.21747 1.21739 1.19100 0.90517 0.82326 1.43283 0.90352 1.44585 1.01867 0.99566 1.86991 1.21987 0.84601 0.92139 0.98418 1.22732 0.94689 0.98326 1.00142 1.22480 0.99697 0.93166 0.94909 1.23360 0.95281 0.90318 0.92762 1.50020 1.48303 1.18705 1.19566 1.17318 0.80306 0.79956 0.85770 1.90868 1.40765 1.76746 1.31681 1.20063 0.95459 0.99063 1.00258 1.21389 0.96946 0.96533 0.90924 1.21127 0.98749 0.95347 1.00782 1.17578 0.94357 0.90643 0.87483 1.91591 1.96279 1.63611 1.57830 1.17405 0.88455 0.94426 0.99525 1.91588 1.56277 1.66489 1.94842 1.17308 0.85596 0.94739 0.89132 1.91661 1.51699 1.94983 1.69049 1.23161 1.01522 0.80412 0.94093 1.20981 0.92543 0.85534 0.98392 0.93697 0.87524 0.96808 0.91460 0.92093 0.89002 0.89434 0.82267 0.82030 0.89480 0.89166 0.95519 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.85 10.09 55.49 0.56 -25.29 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -5.87 10.28 -15.06 -0.15 -6.02 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.17 3.41 -170.34 -0.58 -14.75 16 10 C 0.15 3.46 5.90 -2.33 -0.01 3.44 16 11 C -0.12 -2.05 6.42 -25.11 -0.16 -2.21 16 12 C -0.10 -1.46 0.98 -154.68 -0.15 -1.61 16 13 C 0.11 1.07 5.59 -3.53 -0.02 1.05 16 14 N -0.63 -7.98 3.58 -186.86 -0.67 -8.65 16 15 C 0.58 8.15 7.78 -12.45 -0.10 8.06 16 16 O -0.52 -9.48 16.46 5.29 0.09 -9.40 16 17 C -0.14 -1.58 5.82 -104.92 -0.61 -2.19 16 18 C -0.04 -0.28 8.84 -39.20 -0.35 -0.63 16 19 C -0.14 -0.85 10.00 -39.58 -0.40 -1.25 16 20 C 0.12 1.00 7.31 -39.25 -0.29 0.72 16 21 F -0.11 -1.01 17.17 2.25 0.04 -0.97 16 22 C 0.02 0.24 7.30 -39.37 -0.29 -0.04 16 23 F -0.11 -1.31 17.09 2.25 0.04 -1.28 16 24 C 0.15 1.83 7.25 -38.92 -0.28 1.55 16 25 F -0.10 -1.39 15.77 2.25 0.04 -1.36 16 26 C 0.13 1.78 8.08 -3.52 -0.03 1.76 16 27 C 0.15 2.68 6.75 -3.56 -0.02 2.66 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.11 2.76 5.89 -51.93 -0.31 2.46 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.00 8.06 -51.93 -0.42 0.59 16 33 H 0.09 0.68 7.71 -51.93 -0.40 0.28 16 34 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 35 H 0.16 0.82 5.50 -52.49 -0.29 0.53 16 36 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 38 H 0.09 1.11 8.00 -51.93 -0.42 0.70 16 39 H 0.03 0.47 7.85 -51.93 -0.41 0.06 16 40 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -31.76 345.80 -7.56 -39.32 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.30 Total: -3.95 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.96 Total: 4.91 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.69 Total: -48.69 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.11 Total: -3.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.76 -7.56 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072926721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.468 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds