Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00063 * 2 1 4 4 H 1.48504 * 109.46879 * 275.00422 * 3 2 1 5 5 H 1.48500 * 109.47059 * 34.99653 * 3 2 1 6 6 H 1.48492 * 109.47216 * 155.00135 * 3 2 1 7 7 C 1.38810 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99993 * 174.86368 * 7 2 1 9 9 N 1.36943 * 119.99898 * 354.85717 * 7 2 1 10 10 C 1.47144 * 125.58179 * 5.05478 * 9 7 2 11 11 C 1.54622 * 107.37929 * 179.13245 * 10 9 7 12 12 C 1.53517 * 102.70368 * 339.38628 * 11 10 9 13 13 C 1.51778 * 117.00222 * 164.16295 * 12 11 10 14 14 N 1.47391 * 87.51755 * 92.92653 * 13 12 11 15 15 C 1.34780 * 135.85588 * 205.66103 * 14 13 12 16 16 O 1.21586 * 119.99699 * 5.47471 * 15 14 13 17 17 C 1.47571 * 120.00238 * 185.46863 * 15 14 13 18 18 C 1.39756 * 120.12887 * 24.30321 * 17 15 14 19 19 C 1.37926 * 119.87429 * 180.02562 * 18 17 15 20 20 F 1.35103 * 119.92280 * 179.97438 * 19 18 17 21 21 C 1.38944 * 120.14653 * 359.97333 * 19 18 17 22 22 F 1.35097 * 119.86372 * 180.28308 * 21 19 18 23 23 C 1.38441 * 120.26433 * 0.02562 * 21 19 18 24 24 C 1.38210 * 120.12498 * 0.02562 * 23 21 19 25 25 F 1.35100 * 120.07664 * 179.97438 * 24 23 21 26 26 C 1.47392 * 88.29250 * 25.91877 * 14 13 12 27 27 C 1.47758 * 125.57654 * 185.10662 * 9 7 2 28 28 H 0.97008 * 119.99935 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.86147 * 59.68058 * 10 9 7 30 30 H 1.09004 * 109.86178 * 298.58486 * 10 9 7 31 31 H 1.09002 * 110.76615 * 221.08182 * 11 10 9 32 32 H 1.09002 * 110.76631 * 97.68681 * 11 10 9 33 33 H 1.08996 * 113.54628 * 338.26971 * 13 12 11 34 34 H 1.08997 * 113.60884 * 207.59233 * 13 12 11 35 35 H 1.07997 * 120.06387 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.93879 * 179.97438 * 23 21 19 37 37 H 1.09004 * 113.53890 * 88.74329 * 26 14 13 38 38 H 1.09002 * 113.54697 * 219.41882 * 26 14 13 39 39 H 1.08998 * 110.40657 * 83.46082 * 27 9 7 40 40 H 1.09002 * 110.40388 * 321.03518 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3919 2.1074 -1.3948 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4120 0.5916 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2040 -0.0843 9 7 1.3297 -2.3857 0.1052 10 6 -0.1343 -2.5332 0.1201 11 6 -0.4452 -4.0437 0.2320 12 6 0.8585 -4.6935 -0.2525 13 6 1.0547 -6.1647 0.0652 14 7 0.4621 -6.4621 -1.2511 15 6 -0.2014 -7.4983 -1.8012 16 8 -0.5145 -8.4524 -1.1157 17 6 -0.5482 -7.4747 -3.2354 18 6 0.1968 -6.6951 -4.1245 19 6 -0.1322 -6.6765 -5.4638 20 9 0.5870 -5.9228 -6.3241 21 6 -1.2016 -7.4312 -5.9302 22 9 -1.5152 -7.4132 -7.2441 23 6 -1.9435 -8.2055 -5.0547 24 6 -1.6242 -8.2315 -3.7103 25 9 -2.3492 -8.9872 -2.8567 26 6 0.9166 -5.1359 -1.7062 27 6 1.9453 -3.7237 0.2243 28 1 -0.4850 0.8401 0.0004 29 1 -0.5559 -2.1356 -0.8032 30 1 -0.5511 -2.0047 0.9774 31 1 -1.2773 -4.3161 -0.4173 32 1 -0.6538 -4.3198 1.2656 33 1 0.4512 -6.5135 0.9031 34 1 2.1013 -6.4577 0.1476 35 1 1.0285 -6.1083 -3.7635 36 1 -2.7739 -8.7898 -5.4229 37 1 1.9249 -5.1397 -2.1202 38 1 0.1978 -4.6256 -2.3474 39 1 2.2098 -3.9294 1.2615 40 1 2.8254 -3.7952 -0.4147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072927953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -62.406156 kcal Electronic energy + Delta-G solvation = -29425.532563 eV Core-core repulsion = 24793.650160 eV Total energy + Delta-G solvation = -4631.882402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.97071 -49.34435 -49.01826 -41.00190 -39.29806 -37.92957 -35.78958 -32.53517 -31.83086 -30.62484 -29.50978 -28.73695 -26.25998 -26.04387 -24.56458 -23.81574 -23.14169 -20.46338 -20.16090 -18.90059 -18.43869 -18.33266 -17.85072 -17.00142 -16.87706 -16.73357 -16.25908 -15.90924 -15.57592 -15.50327 -15.37830 -15.01821 -14.95618 -14.74276 -14.40368 -13.95679 -13.89214 -13.70102 -13.16860 -12.79069 -12.52049 -12.41128 -12.18322 -12.11368 -12.04454 -11.89619 -11.08663 -11.00299 -10.75964 -10.57394 -10.33967 -10.16529 -9.98439 -9.88063 -9.73720 -9.69367 -9.14400 -8.73647 -8.64235 -6.90460 -5.78195 -3.11692 -0.07289 0.28621 2.19090 2.56367 3.00118 3.06699 3.36263 3.42305 3.44105 3.45621 3.82248 3.82587 3.98041 4.33026 4.42390 4.53821 4.79474 4.85886 4.98002 5.08954 5.13225 5.21962 5.35375 5.39048 5.42648 5.49950 5.58150 5.65960 5.70521 5.75133 6.03400 6.07430 6.15079 6.37171 6.42870 6.56454 6.62091 7.47912 7.55550 7.56709 7.75962 7.91571 8.18254 9.14862 9.75148 10.40244 11.33553 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.003091 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.532688 B = 9055.384685 C =10310.601295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.117 4.117 12 C -0.104 4.104 13 C 0.122 3.878 14 N -0.636 5.636 15 C 0.587 3.413 16 O -0.525 6.525 17 C -0.143 4.143 18 C -0.064 4.064 19 C 0.056 3.944 20 F -0.117 7.117 21 C 0.123 3.877 22 F -0.115 7.115 23 C -0.173 4.173 24 C 0.179 3.821 25 F -0.103 7.103 26 C 0.110 3.890 27 C 0.154 3.846 28 H 0.253 0.747 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.029 0.971 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 -16.119 -9.445 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.156 4.156 12 C -0.106 4.106 13 C 0.000 4.000 14 N -0.370 5.370 15 C 0.376 3.624 16 O -0.403 6.403 17 C -0.148 4.148 18 C -0.084 4.084 19 C 0.035 3.965 20 F -0.096 7.096 21 C 0.102 3.898 22 F -0.093 7.093 23 C -0.193 4.193 24 C 0.158 3.842 25 F -0.081 7.081 26 C -0.012 4.012 27 C 0.027 3.973 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.830 -16.570 -9.217 19.049 hybrid contribution 0.367 0.960 -0.443 1.119 sum -1.463 -15.610 -9.660 18.415 Atomic orbital electron populations 1.69965 1.04927 1.25125 1.56672 1.24807 0.95680 0.97679 1.02012 0.86135 0.78714 0.83626 0.77490 1.21665 1.21655 1.20607 1.19038 0.90819 0.82362 1.43703 0.90360 1.44538 1.01527 1.00435 1.86622 1.21239 0.84326 0.87858 1.01171 1.22483 0.94023 0.98957 1.00106 1.22188 1.00326 0.93376 0.94685 1.22846 0.98486 0.93024 0.85617 1.49682 1.54280 1.16388 1.16623 1.17155 0.78610 0.81313 0.85372 1.90856 1.54009 1.33198 1.62211 1.19916 0.98256 1.01347 0.95254 1.21336 1.00099 0.96857 0.90067 1.17418 0.93755 0.96957 0.88354 1.91600 1.75942 1.73362 1.68671 1.17424 0.95037 0.98229 0.79128 1.91593 1.91934 1.94847 1.30899 1.20905 1.03687 1.03515 0.91199 1.17182 0.89741 0.90533 0.86711 1.91647 1.74969 1.72291 1.69161 1.23111 1.00163 0.79598 0.98350 1.21133 0.93013 0.85423 0.97703 0.93706 0.93845 0.93405 0.92078 0.91584 0.89990 0.89254 0.81772 0.81548 0.88998 0.89652 0.95377 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.91 10.33 55.49 0.57 -25.34 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.24 29.56 -169.99 -5.02 16.21 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.23 -6.04 10.27 -15.06 -0.15 -6.19 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.60 -14.10 3.41 -170.53 -0.58 -14.68 16 10 C 0.18 4.01 5.40 -2.84 -0.02 3.99 16 11 C -0.12 -2.00 6.40 -25.61 -0.16 -2.16 16 12 C -0.10 -1.54 1.06 -155.22 -0.16 -1.70 16 13 C 0.12 1.55 8.03 -7.48 -0.06 1.49 16 14 N -0.64 -8.37 3.65 -186.97 -0.68 -9.05 16 15 C 0.59 8.39 7.80 -12.45 -0.10 8.29 16 16 O -0.53 -9.21 16.48 5.29 0.09 -9.12 16 17 C -0.14 -1.68 5.84 -104.92 -0.61 -2.29 16 18 C -0.06 -0.64 8.84 -39.13 -0.35 -0.99 16 19 C 0.06 0.56 7.29 -39.43 -0.29 0.27 16 20 F -0.12 -1.29 17.17 2.25 0.04 -1.25 16 21 C 0.12 1.14 7.31 -39.25 -0.29 0.85 16 22 F -0.11 -1.11 17.17 2.25 0.04 -1.07 16 23 C -0.17 -1.47 9.99 -39.52 -0.39 -1.87 16 24 C 0.18 1.96 7.25 -38.98 -0.28 1.68 16 25 F -0.10 -1.31 15.84 2.25 0.04 -1.28 16 26 C 0.11 1.39 5.45 -7.33 -0.04 1.35 16 27 C 0.15 2.73 6.70 -3.22 -0.02 2.71 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.04 1.08 7.54 -51.93 -0.39 0.69 16 30 H 0.05 1.22 7.36 -51.93 -0.38 0.83 16 31 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.16 1.48 5.62 -52.49 -0.30 1.18 16 36 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.09 0.99 7.78 -51.93 -0.40 0.58 16 38 H 0.09 1.11 7.82 -51.93 -0.41 0.70 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.71 8.00 -51.93 -0.42 0.30 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -30.79 347.00 -7.68 -38.47 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.37 Total: -3.32 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -3.02 Total: 5.20 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.69 Total: -49.07 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.11 Total: -3.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.79 -7.68 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072927953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.937 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds