Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00063 * 2 1 4 4 H 1.48504 * 109.46879 * 275.00422 * 3 2 1 5 5 H 1.48500 * 109.47059 * 34.99653 * 3 2 1 6 6 H 1.48492 * 109.47216 * 155.00135 * 3 2 1 7 7 C 1.38810 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99993 * 174.86368 * 7 2 1 9 9 N 1.36943 * 119.99898 * 354.85717 * 7 2 1 10 10 C 1.47144 * 125.58179 * 5.05478 * 9 7 2 11 11 C 1.54622 * 107.37929 * 179.13245 * 10 9 7 12 12 C 1.53517 * 102.70368 * 339.38628 * 11 10 9 13 13 C 1.51778 * 117.00222 * 164.16295 * 12 11 10 14 14 N 1.47391 * 87.51755 * 92.92653 * 13 12 11 15 15 C 1.34780 * 135.85588 * 205.66103 * 14 13 12 16 16 O 1.21586 * 119.99699 * 5.47471 * 15 14 13 17 17 C 1.47571 * 120.00238 * 185.46863 * 15 14 13 18 18 C 1.39756 * 120.12887 * 24.30321 * 17 15 14 19 19 C 1.37926 * 119.87429 * 180.02562 * 18 17 15 20 20 F 1.35103 * 119.92280 * 179.97438 * 19 18 17 21 21 C 1.38944 * 120.14653 * 359.97333 * 19 18 17 22 22 F 1.35097 * 119.86372 * 180.28308 * 21 19 18 23 23 C 1.38441 * 120.26433 * 0.02562 * 21 19 18 24 24 C 1.38210 * 120.12498 * 0.02562 * 23 21 19 25 25 F 1.35100 * 120.07664 * 179.97438 * 24 23 21 26 26 C 1.47392 * 88.29250 * 25.91877 * 14 13 12 27 27 C 1.47758 * 125.57654 * 185.10662 * 9 7 2 28 28 H 0.97008 * 119.99935 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.86147 * 59.68058 * 10 9 7 30 30 H 1.09004 * 109.86178 * 298.58486 * 10 9 7 31 31 H 1.09002 * 110.76615 * 221.08182 * 11 10 9 32 32 H 1.09002 * 110.76631 * 97.68681 * 11 10 9 33 33 H 1.08996 * 113.54628 * 338.26971 * 13 12 11 34 34 H 1.08997 * 113.60884 * 207.59233 * 13 12 11 35 35 H 1.07997 * 120.06387 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.93879 * 179.97438 * 23 21 19 37 37 H 1.09004 * 113.53890 * 88.74329 * 26 14 13 38 38 H 1.09002 * 113.54697 * 219.41882 * 26 14 13 39 39 H 1.08998 * 110.40657 * 83.46082 * 27 9 7 40 40 H 1.09002 * 110.40388 * 321.03518 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3919 2.1074 -1.3948 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4120 0.5916 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2040 -0.0843 9 7 1.3297 -2.3857 0.1052 10 6 -0.1343 -2.5332 0.1201 11 6 -0.4452 -4.0437 0.2320 12 6 0.8585 -4.6935 -0.2525 13 6 1.0547 -6.1647 0.0652 14 7 0.4621 -6.4621 -1.2511 15 6 -0.2014 -7.4983 -1.8012 16 8 -0.5145 -8.4524 -1.1157 17 6 -0.5482 -7.4747 -3.2354 18 6 0.1968 -6.6951 -4.1245 19 6 -0.1322 -6.6765 -5.4638 20 9 0.5870 -5.9228 -6.3241 21 6 -1.2016 -7.4312 -5.9302 22 9 -1.5152 -7.4132 -7.2441 23 6 -1.9435 -8.2055 -5.0547 24 6 -1.6242 -8.2315 -3.7103 25 9 -2.3492 -8.9872 -2.8567 26 6 0.9166 -5.1359 -1.7062 27 6 1.9453 -3.7237 0.2243 28 1 -0.4850 0.8401 0.0004 29 1 -0.5559 -2.1356 -0.8032 30 1 -0.5511 -2.0047 0.9774 31 1 -1.2773 -4.3161 -0.4173 32 1 -0.6538 -4.3198 1.2656 33 1 0.4512 -6.5135 0.9031 34 1 2.1013 -6.4577 0.1476 35 1 1.0285 -6.1083 -3.7635 36 1 -2.7739 -8.7898 -5.4229 37 1 1.9249 -5.1397 -2.1202 38 1 0.1978 -4.6256 -2.3474 39 1 2.2098 -3.9294 1.2615 40 1 2.8254 -3.7952 -0.4147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072927953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -79.891974 kcal Electronic energy + Delta-G solvation = -29426.290805 eV Core-core repulsion = 24793.650160 eV Total energy + Delta-G solvation = -4632.640644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.75609 -50.23614 -49.81628 -42.12158 -40.29828 -38.98928 -37.33843 -34.15551 -32.90560 -31.48337 -31.05927 -30.12653 -27.54002 -27.27310 -25.84983 -24.99290 -24.08202 -22.12909 -21.26463 -19.97526 -19.42399 -19.22710 -18.77716 -18.57217 -17.84536 -17.69382 -17.30599 -16.86601 -16.76663 -16.55690 -16.41652 -16.18959 -16.02393 -15.79631 -15.58116 -15.41885 -14.97421 -14.79962 -14.23017 -14.12993 -13.73122 -13.68684 -13.57407 -13.33649 -12.97333 -12.95361 -12.85598 -12.76211 -12.27530 -12.01705 -11.96173 -11.81229 -11.67316 -11.24522 -11.07945 -10.63796 -10.52391 -10.01768 -9.76934 -8.82446 -7.80476 -5.14100 -0.89927 -0.47198 1.28945 1.50511 1.51515 1.54613 1.60431 2.08070 2.28741 2.53973 2.65597 2.93674 3.03792 3.15661 3.28245 3.42219 3.57391 3.63930 3.81601 4.01499 4.07249 4.22077 4.23176 4.30770 4.38939 4.50387 4.52126 4.58930 4.64811 4.69403 4.72073 4.86396 4.94693 5.04871 5.18170 5.23104 5.29499 5.53611 5.70211 5.82110 6.24611 6.50107 6.84663 7.15609 7.83669 8.47643 9.30303 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.003091 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.532688 B = 9055.384685 C =10310.601295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.234 4.234 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.189 3.811 11 C -0.104 4.104 12 C -0.100 4.100 13 C 0.129 3.871 14 N -0.634 5.634 15 C 0.586 3.414 16 O -0.564 6.564 17 C -0.156 4.156 18 C -0.055 4.055 19 C 0.053 3.947 20 F -0.123 7.123 21 C 0.128 3.872 22 F -0.115 7.115 23 C -0.153 4.153 24 C 0.169 3.831 25 F -0.116 7.116 26 C 0.115 3.885 27 C 0.152 3.848 28 H 0.244 0.756 29 H 0.009 0.991 30 H 0.006 0.994 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.176 0.824 36 H 0.196 0.804 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 -17.441 -10.536 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.064 3.936 11 C -0.142 4.142 12 C -0.102 4.102 13 C 0.008 3.992 14 N -0.367 5.367 15 C 0.376 3.624 16 O -0.445 6.445 17 C -0.160 4.160 18 C -0.074 4.074 19 C 0.032 3.968 20 F -0.102 7.102 21 C 0.107 3.893 22 F -0.093 7.093 23 C -0.172 4.172 24 C 0.148 3.852 25 F -0.094 7.094 26 C -0.007 4.007 27 C 0.027 3.973 28 H 0.053 0.947 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.193 0.807 36 H 0.213 0.787 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.465 -17.910 -10.311 20.672 hybrid contribution -0.031 1.357 -0.121 1.362 sum -0.495 -16.554 -10.432 19.573 Atomic orbital electron populations 1.70188 1.06326 1.25010 1.58603 1.25581 0.96422 1.00842 1.03005 0.85164 0.77941 0.79745 0.77121 1.21606 1.22736 1.19133 1.19469 0.91498 0.83573 1.41744 0.89404 1.44820 1.02082 1.01946 1.86334 1.20911 0.84118 0.90974 0.97574 1.22265 0.95711 0.95177 1.01025 1.22000 0.97517 0.94049 0.96643 1.22892 1.00182 0.90704 0.85462 1.49643 1.53890 1.16269 1.16854 1.17450 0.77967 0.80816 0.86156 1.90834 1.55595 1.34645 1.63378 1.19778 0.99331 1.02731 0.94148 1.21306 0.99973 0.96361 0.89753 1.17481 0.93951 0.97057 0.88297 1.91590 1.76157 1.73584 1.68822 1.17455 0.94752 0.97938 0.79152 1.91600 1.91893 1.94809 1.30967 1.21051 1.03690 1.02620 0.89826 1.17366 0.89798 0.90670 0.87397 1.91615 1.75311 1.72735 1.69778 1.23203 1.01738 0.78856 0.96860 1.21313 0.94200 0.83211 0.98556 0.94676 0.97308 0.97613 0.91340 0.90855 0.90152 0.86312 0.80707 0.78712 0.86061 0.89944 0.94684 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.59 10.33 21.65 0.22 -55.36 16 2 C -0.07 -3.57 5.48 84.86 0.47 -3.11 16 3 Si 0.97 44.06 29.56 68.60 2.03 46.08 16 4 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.23 -12.15 10.27 84.03 0.86 -11.29 16 8 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -29.02 3.41 -693.44 -2.36 -31.39 16 10 C 0.19 8.73 5.40 86.81 0.47 9.20 16 11 C -0.10 -3.47 6.40 31.32 0.20 -3.27 16 12 C -0.10 -2.75 1.06 -52.62 -0.06 -2.80 16 13 C 0.13 2.90 8.03 83.67 0.67 3.57 16 14 N -0.63 -15.17 3.65 -863.71 -3.15 -18.33 16 15 C 0.59 15.88 7.80 86.71 0.68 16.55 16 16 O -0.56 -19.33 16.48 -3.99 -0.07 -19.39 16 17 C -0.16 -3.39 5.84 -20.05 -0.12 -3.51 16 18 C -0.05 -0.98 8.84 22.56 0.20 -0.78 16 19 C 0.05 0.94 7.29 22.36 0.16 1.10 16 20 F -0.12 -2.47 17.17 44.97 0.77 -1.70 16 21 C 0.13 2.08 7.31 22.49 0.16 2.24 16 22 F -0.11 -1.95 17.17 44.97 0.77 -1.18 16 23 C -0.15 -2.22 9.99 22.31 0.22 -1.99 16 24 C 0.17 3.43 7.25 22.66 0.16 3.59 16 25 F -0.12 -2.87 15.84 44.97 0.71 -2.16 16 26 C 0.12 2.59 5.45 83.76 0.46 3.05 16 27 C 0.15 5.07 6.70 86.23 0.58 5.65 16 28 H 0.24 14.02 8.31 -92.70 -0.77 13.25 16 29 H 0.01 0.45 7.54 -2.38 -0.02 0.44 16 30 H 0.01 0.30 7.36 -2.38 -0.02 0.28 16 31 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.18 2.66 5.62 -2.91 -0.02 2.64 16 36 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.12 2.10 7.78 -2.39 -0.02 2.08 16 38 H 0.08 1.96 7.82 -2.39 -0.02 1.94 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.86 8.00 -2.39 -0.02 1.84 16 Total: -1.00 -68.64 347.00 5.14 -63.49 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.10 Total: 1.72 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 5.12 Total: 18.21 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -5.30 Total: -105.08 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.07 Total: -19.39 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 2.26 Total: -5.04 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.64 5.14 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072927953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.397 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds