Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99523 * 2 1 4 4 H 1.48493 * 109.47456 * 269.99833 * 3 2 1 5 5 H 1.48495 * 109.47143 * 30.00457 * 3 2 1 6 6 H 1.48500 * 109.46731 * 150.00065 * 3 2 1 7 7 C 1.38814 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99668 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.47144 * 125.58402 * 0.02562 * 9 7 2 11 11 C 1.54628 * 107.38062 * 179.05843 * 10 9 7 12 12 C 1.53522 * 102.69949 * 339.38415 * 11 10 9 13 13 C 1.51781 * 116.99592 * 164.16457 * 12 11 10 14 14 N 1.47393 * 87.51998 * 92.93383 * 13 12 11 15 15 C 1.34773 * 135.85549 * 205.66719 * 14 13 12 16 16 O 1.21593 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.47543 * 120.00239 * 179.72086 * 15 14 13 18 18 C 1.39920 * 120.17949 * 89.99195 * 17 15 14 19 19 F 1.35103 * 120.07338 * 0.02749 * 18 17 15 20 20 C 1.38174 * 119.85228 * 179.76895 * 18 17 15 21 21 C 1.38332 * 120.21399 * 0.51298 * 20 18 17 22 22 C 1.38451 * 120.35907 * 359.74420 * 21 20 18 23 23 F 1.35094 * 119.92851 * 179.97438 * 22 21 20 24 24 C 1.38441 * 120.14188 * 359.97438 * 22 21 20 25 25 F 1.35099 * 120.10739 * 179.97438 * 24 22 21 26 26 C 1.47394 * 88.29256 * 25.91455 * 14 13 12 27 27 C 1.47753 * 125.57689 * 179.97438 * 9 7 2 28 28 H 0.96992 * 120.00323 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.86585 * 59.60816 * 10 9 7 30 30 H 1.08996 * 109.97765 * 298.57325 * 10 9 7 31 31 H 1.09000 * 110.76496 * 221.09062 * 11 10 9 32 32 H 1.08993 * 110.76675 * 97.68624 * 11 10 9 33 33 H 1.08997 * 113.54730 * 338.26716 * 13 12 11 34 34 H 1.09002 * 113.60639 * 207.60372 * 13 12 11 35 35 H 1.08007 * 119.89241 * 180.25342 * 20 18 17 36 36 H 1.08001 * 119.82191 * 179.71991 * 21 20 18 37 37 H 1.08997 * 113.54094 * 88.74109 * 26 14 13 38 38 H 1.09000 * 113.54547 * 219.42321 * 26 14 13 39 39 H 1.08998 * 110.41104 * 83.53531 * 27 9 7 40 40 H 1.09003 * 110.40594 * 321.10901 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1388 -2.5312 -0.0028 11 6 -0.4549 -4.0446 -0.0280 12 6 0.8478 -4.6526 -0.5667 13 6 1.0385 -6.1471 -0.3824 14 7 0.4478 -6.3227 -1.7214 15 6 -0.2179 -7.3027 -2.3638 16 8 -0.4479 -8.3538 -1.7974 17 6 -0.6726 -7.0982 -3.7524 18 6 0.1589 -7.4448 -4.8231 19 9 1.3819 -7.9688 -4.5884 20 6 -0.2756 -7.2548 -6.1209 21 6 -1.5251 -6.7135 -6.3644 22 6 -2.3530 -6.3625 -5.3117 23 9 -3.5713 -5.8342 -5.5595 24 6 -1.9349 -6.5519 -4.0056 25 9 -2.7431 -6.2086 -2.9788 26 6 0.9076 -4.9625 -2.0543 27 6 1.9366 -3.7333 -0.0028 28 1 -0.4850 0.8399 -0.0004 29 1 -0.5572 -2.0506 -0.8872 30 1 -0.5578 -2.0802 0.8967 31 1 -1.2864 -4.2546 -0.7008 32 1 -0.6665 -4.4120 0.9761 33 1 0.4320 -6.5678 0.4196 34 1 2.0840 -6.4499 -0.3246 35 1 0.3641 -7.5259 -6.9478 36 1 -1.8565 -6.5636 -7.3813 37 1 1.9168 -4.9323 -2.4649 38 1 0.1919 -4.3940 -2.6482 39 1 2.1985 -4.0328 1.0120 40 1 2.8178 -3.7501 -0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072928492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -63.019578 kcal Electronic energy + Delta-G solvation = -29883.370226 eV Core-core repulsion = 25251.461223 eV Total energy + Delta-G solvation = -4631.909002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.87768 -49.47903 -48.94233 -40.84674 -39.28881 -38.01645 -35.73952 -32.43691 -31.85125 -30.51823 -29.53471 -28.73230 -26.19542 -26.04261 -24.57600 -23.54268 -23.31876 -20.44580 -20.17896 -18.69819 -18.49042 -18.30742 -17.92337 -17.12145 -16.78486 -16.64239 -16.31819 -16.04624 -15.86117 -15.40412 -15.29291 -14.94825 -14.88089 -14.76152 -14.43931 -13.87105 -13.71990 -13.47027 -13.21734 -12.65539 -12.53443 -12.43148 -12.22402 -12.18484 -11.99137 -11.87446 -11.05945 -10.96668 -10.73658 -10.57555 -10.32739 -10.14694 -9.96645 -9.85658 -9.67504 -9.64694 -9.12734 -8.73704 -8.63399 -6.88163 -5.74733 -3.08886 0.12099 0.25925 2.23436 2.45821 2.70255 3.12284 3.37690 3.43042 3.45055 3.49483 3.83734 3.90921 4.12018 4.26169 4.42741 4.55690 4.82627 4.91733 5.04120 5.13549 5.19845 5.26479 5.39878 5.42064 5.46414 5.58360 5.61130 5.66337 5.76085 5.79049 6.07399 6.09579 6.18847 6.41137 6.47627 6.60484 6.65126 7.51913 7.56829 7.57782 7.79043 7.87643 8.20889 9.17655 9.77696 10.42952 11.36795 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003318 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.968970 B = 8437.864962 C = 9070.854656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.122 3.878 14 N -0.630 5.630 15 C 0.592 3.408 16 O -0.524 6.524 17 C -0.161 4.161 18 C 0.154 3.846 19 F -0.116 7.116 20 C -0.134 4.134 21 C -0.081 4.081 22 C 0.061 3.939 23 F -0.118 7.118 24 C 0.134 3.866 25 F -0.106 7.106 26 C 0.118 3.882 27 C 0.155 3.845 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.029 0.971 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 -14.842 -12.934 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.156 4.156 12 C -0.106 4.106 13 C 0.000 4.000 14 N -0.364 5.364 15 C 0.379 3.621 16 O -0.401 6.401 17 C -0.166 4.166 18 C 0.134 3.866 19 F -0.094 7.094 20 C -0.153 4.153 21 C -0.100 4.100 22 C 0.040 3.960 23 F -0.096 7.096 24 C 0.113 3.887 25 F -0.084 7.084 26 C -0.004 4.004 27 C 0.028 3.972 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.707 -15.315 -12.669 19.949 hybrid contribution 0.240 0.983 0.101 1.016 sum -1.467 -14.332 -12.568 19.118 Atomic orbital electron populations 1.69958 1.04896 1.25105 1.56902 1.24797 0.95687 0.97661 1.02139 0.86129 0.78608 0.83524 0.77551 1.21622 1.21688 1.20678 1.19044 0.90441 0.82293 1.44026 0.90357 1.44537 1.01575 0.99653 1.87345 1.21219 0.84235 0.87750 1.01281 1.22492 0.94068 0.99273 0.99798 1.22185 1.00357 0.93338 0.94711 1.22879 0.98635 0.94419 0.84086 1.49787 1.53475 1.15928 1.17165 1.16997 0.78679 0.82559 0.83898 1.90839 1.57142 1.25455 1.66667 1.19803 0.94668 1.06776 0.95403 1.17258 0.80826 0.96396 0.92118 1.91598 1.39315 1.83238 1.95252 1.21011 0.97103 1.01860 0.95358 1.21046 0.92622 0.96951 0.99412 1.17460 0.83791 1.03095 0.91643 1.91588 1.39679 1.83754 1.94612 1.17245 0.88495 0.99213 0.83784 1.91636 1.70935 1.89085 1.56708 1.23008 1.00212 0.79168 0.98031 1.21125 0.93045 0.85691 0.97341 0.93706 0.93526 0.93692 0.92046 0.91603 0.89974 0.89185 0.82111 0.81950 0.88990 0.90095 0.95385 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.30 55.49 0.57 -25.81 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.13 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.54 3.41 -170.55 -0.58 -15.12 16 10 C 0.18 4.18 5.39 -2.83 -0.02 4.16 16 11 C -0.12 -2.14 6.41 -25.60 -0.16 -2.30 16 12 C -0.10 -1.67 1.06 -155.22 -0.16 -1.84 16 13 C 0.12 1.71 8.03 -7.47 -0.06 1.65 16 14 N -0.63 -9.50 3.70 -186.95 -0.69 -10.19 16 15 C 0.59 9.55 6.79 -12.47 -0.08 9.46 16 16 O -0.52 -10.04 17.88 5.28 0.09 -9.95 16 17 C -0.16 -2.14 5.45 -104.87 -0.57 -2.71 16 18 C 0.15 1.65 7.29 -38.98 -0.28 1.36 16 19 F -0.12 -1.35 16.83 2.25 0.04 -1.31 16 20 C -0.13 -0.94 10.01 -39.57 -0.40 -1.34 16 21 C -0.08 -0.56 10.01 -39.47 -0.39 -0.95 16 22 C 0.06 0.62 7.29 -39.43 -0.29 0.33 16 23 F -0.12 -1.31 17.18 2.25 0.04 -1.27 16 24 C 0.13 1.72 7.30 -38.90 -0.28 1.44 16 25 F -0.11 -1.58 16.74 2.25 0.04 -1.55 16 26 C 0.12 1.72 7.76 -7.33 -0.06 1.66 16 27 C 0.15 2.88 6.70 -3.23 -0.02 2.86 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.05 1.21 7.39 -51.92 -0.38 0.82 16 30 H 0.04 1.17 7.49 -51.93 -0.39 0.78 16 31 H 0.06 1.08 8.07 -51.93 -0.42 0.67 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.16 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.36 354.11 -7.75 -40.11 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.53 Total: -3.96 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -3.03 Total: 7.25 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.70 Total: -51.13 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.11 Total: -4.13 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.36 -7.75 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072928492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.912 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds