Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99523 * 2 1 4 4 H 1.48493 * 109.47456 * 269.99833 * 3 2 1 5 5 H 1.48495 * 109.47143 * 30.00457 * 3 2 1 6 6 H 1.48500 * 109.46731 * 150.00065 * 3 2 1 7 7 C 1.38814 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99668 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.47144 * 125.58402 * 0.02562 * 9 7 2 11 11 C 1.54628 * 107.38062 * 179.05843 * 10 9 7 12 12 C 1.53522 * 102.69949 * 339.38415 * 11 10 9 13 13 C 1.51781 * 116.99592 * 164.16457 * 12 11 10 14 14 N 1.47393 * 87.51998 * 92.93383 * 13 12 11 15 15 C 1.34773 * 135.85549 * 205.66719 * 14 13 12 16 16 O 1.21593 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.47543 * 120.00239 * 179.72086 * 15 14 13 18 18 C 1.39920 * 120.17949 * 89.99195 * 17 15 14 19 19 F 1.35103 * 120.07338 * 0.02749 * 18 17 15 20 20 C 1.38174 * 119.85228 * 179.76895 * 18 17 15 21 21 C 1.38332 * 120.21399 * 0.51298 * 20 18 17 22 22 C 1.38451 * 120.35907 * 359.74420 * 21 20 18 23 23 F 1.35094 * 119.92851 * 179.97438 * 22 21 20 24 24 C 1.38441 * 120.14188 * 359.97438 * 22 21 20 25 25 F 1.35099 * 120.10739 * 179.97438 * 24 22 21 26 26 C 1.47394 * 88.29256 * 25.91455 * 14 13 12 27 27 C 1.47753 * 125.57689 * 179.97438 * 9 7 2 28 28 H 0.96992 * 120.00323 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.86585 * 59.60816 * 10 9 7 30 30 H 1.08996 * 109.97765 * 298.57325 * 10 9 7 31 31 H 1.09000 * 110.76496 * 221.09062 * 11 10 9 32 32 H 1.08993 * 110.76675 * 97.68624 * 11 10 9 33 33 H 1.08997 * 113.54730 * 338.26716 * 13 12 11 34 34 H 1.09002 * 113.60639 * 207.60372 * 13 12 11 35 35 H 1.08007 * 119.89241 * 180.25342 * 20 18 17 36 36 H 1.08001 * 119.82191 * 179.71991 * 21 20 18 37 37 H 1.08997 * 113.54094 * 88.74109 * 26 14 13 38 38 H 1.09000 * 113.54547 * 219.42321 * 26 14 13 39 39 H 1.08998 * 110.41104 * 83.53531 * 27 9 7 40 40 H 1.09003 * 110.40594 * 321.10901 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1388 -2.5312 -0.0028 11 6 -0.4549 -4.0446 -0.0280 12 6 0.8478 -4.6526 -0.5667 13 6 1.0385 -6.1471 -0.3824 14 7 0.4478 -6.3227 -1.7214 15 6 -0.2179 -7.3027 -2.3638 16 8 -0.4479 -8.3538 -1.7974 17 6 -0.6726 -7.0982 -3.7524 18 6 0.1589 -7.4448 -4.8231 19 9 1.3819 -7.9688 -4.5884 20 6 -0.2756 -7.2548 -6.1209 21 6 -1.5251 -6.7135 -6.3644 22 6 -2.3530 -6.3625 -5.3117 23 9 -3.5713 -5.8342 -5.5595 24 6 -1.9349 -6.5519 -4.0056 25 9 -2.7431 -6.2086 -2.9788 26 6 0.9076 -4.9625 -2.0543 27 6 1.9366 -3.7333 -0.0028 28 1 -0.4850 0.8399 -0.0004 29 1 -0.5572 -2.0506 -0.8872 30 1 -0.5578 -2.0802 0.8967 31 1 -1.2864 -4.2546 -0.7008 32 1 -0.6665 -4.4120 0.9761 33 1 0.4320 -6.5678 0.4196 34 1 2.0840 -6.4499 -0.3246 35 1 0.3641 -7.5259 -6.9478 36 1 -1.8565 -6.5636 -7.3813 37 1 1.9168 -4.9323 -2.4649 38 1 0.1919 -4.3940 -2.6482 39 1 2.1985 -4.0328 1.0120 40 1 2.8178 -3.7501 -0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072928492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -82.495080 kcal Electronic energy + Delta-G solvation = -29884.214747 eV Core-core repulsion = 25251.461223 eV Total energy + Delta-G solvation = -4632.753523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.79715 -50.30234 -49.84780 -42.11017 -40.30859 -39.11905 -37.38928 -34.16292 -32.90088 -31.34603 -31.12563 -30.23870 -27.63391 -27.31602 -25.96767 -24.83349 -24.14302 -22.17857 -21.37912 -19.89259 -19.54343 -19.16694 -18.93073 -18.62237 -18.10849 -17.63317 -17.38864 -17.05640 -16.74339 -16.69220 -16.59456 -16.23817 -16.06445 -15.69155 -15.63016 -15.58479 -14.95533 -14.44482 -14.23562 -14.18083 -13.79450 -13.77292 -13.50914 -13.38911 -13.06303 -12.98869 -12.87948 -12.76730 -12.33878 -12.03267 -12.02061 -11.88259 -11.73808 -11.31970 -11.23182 -10.67276 -10.46103 -9.97171 -9.91438 -8.86487 -7.81234 -5.16570 -0.65031 -0.50410 1.06010 1.45239 1.49887 1.51043 1.59611 1.89203 2.29861 2.52601 2.67145 2.88874 3.13730 3.21277 3.39463 3.42519 3.48403 3.56834 3.74731 3.96387 4.01943 4.15692 4.25787 4.39306 4.43537 4.52636 4.55683 4.58839 4.63253 4.66065 4.76349 4.79822 4.87176 4.97628 5.11485 5.16870 5.37557 5.50543 5.64458 5.78053 6.21493 6.36116 6.66861 7.12846 7.80461 8.44827 9.29448 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003318 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.968970 B = 8437.864962 C = 9070.854656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.236 4.236 8 H 0.089 0.911 9 N -0.625 5.625 10 C 0.192 3.808 11 C -0.104 4.104 12 C -0.099 4.099 13 C 0.127 3.873 14 N -0.631 5.631 15 C 0.588 3.412 16 O -0.565 6.565 17 C -0.186 4.186 18 C 0.146 3.854 19 F -0.123 7.123 20 C -0.106 4.106 21 C -0.054 4.054 22 C 0.055 3.945 23 F -0.126 7.126 24 C 0.103 3.897 25 F -0.131 7.131 26 C 0.125 3.875 27 C 0.154 3.846 28 H 0.245 0.755 29 H 0.011 0.989 30 H 0.005 0.995 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.206 0.794 36 H 0.209 0.791 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -15.974 -15.529 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.107 0.893 9 N -0.351 5.351 10 C 0.067 3.933 11 C -0.143 4.143 12 C -0.100 4.100 13 C 0.006 3.994 14 N -0.364 5.364 15 C 0.377 3.623 16 O -0.445 6.445 17 C -0.191 4.191 18 C 0.125 3.875 19 F -0.101 7.101 20 C -0.125 4.125 21 C -0.072 4.072 22 C 0.035 3.965 23 F -0.104 7.104 24 C 0.082 3.918 25 F -0.109 7.109 26 C 0.003 3.997 27 C 0.029 3.971 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.223 0.777 36 H 0.226 0.774 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.283 -16.464 -15.266 22.454 hybrid contribution -0.349 1.304 0.867 1.605 sum -0.066 -15.160 -14.399 20.909 Atomic orbital electron populations 1.70191 1.06415 1.25113 1.58666 1.25616 0.96453 1.00984 1.02880 0.85114 0.77694 0.79324 0.77430 1.21281 1.22695 1.19176 1.19490 0.91180 0.83420 1.42372 0.89299 1.44815 1.01998 1.01193 1.87129 1.20872 0.84172 0.90594 0.97677 1.22271 0.95475 0.95779 1.00730 1.21990 0.97814 0.94289 0.95934 1.22946 1.00355 0.92236 0.83894 1.49822 1.53169 1.15863 1.17515 1.17447 0.77930 0.81968 0.84968 1.90799 1.58671 1.27026 1.68042 1.19690 0.95613 1.09222 0.94533 1.17551 0.80378 0.96662 0.92866 1.91579 1.39710 1.83427 1.95429 1.21513 0.97150 0.99105 0.94690 1.21584 0.91393 0.93972 1.00285 1.17744 0.84033 1.03309 0.91452 1.91570 1.40347 1.83962 1.94529 1.17568 0.88642 1.01171 0.84390 1.91560 1.71652 1.89667 1.58028 1.23039 1.01259 0.78655 0.96768 1.21292 0.94018 0.83395 0.98388 0.94614 0.97112 0.97644 0.91966 0.90601 0.89934 0.86220 0.77658 0.77432 0.86545 0.90983 0.94334 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.87 10.30 21.65 0.22 -56.65 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 3 Si 0.98 44.63 29.55 68.60 2.03 46.66 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.24 -12.57 10.28 84.03 0.86 -11.71 16 8 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.62 -30.25 3.41 -693.49 -2.36 -32.62 16 10 C 0.19 9.32 5.39 86.81 0.47 9.79 16 11 C -0.10 -3.85 6.41 31.32 0.20 -3.65 16 12 C -0.10 -3.06 1.06 -52.62 -0.06 -3.12 16 13 C 0.13 3.35 8.03 83.67 0.67 4.02 16 14 N -0.63 -18.51 3.70 -863.63 -3.19 -21.70 16 15 C 0.59 19.03 6.79 86.70 0.59 19.61 16 16 O -0.57 -22.08 17.88 -4.01 -0.07 -22.15 16 17 C -0.19 -4.84 5.45 -20.02 -0.11 -4.95 16 18 C 0.15 2.77 7.29 22.66 0.17 2.94 16 19 F -0.12 -2.60 16.83 44.97 0.76 -1.84 16 20 C -0.11 -1.00 10.01 22.28 0.22 -0.78 16 21 C -0.05 -0.51 10.01 22.34 0.22 -0.28 16 22 C 0.06 1.04 7.29 22.37 0.16 1.20 16 23 F -0.13 -2.66 17.18 44.97 0.77 -1.89 16 24 C 0.10 2.67 7.30 22.71 0.17 2.84 16 25 F -0.13 -4.15 16.74 44.97 0.75 -3.40 16 26 C 0.12 3.47 7.76 83.76 0.65 4.12 16 27 C 0.15 5.51 6.70 86.22 0.58 6.09 16 28 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.01 0.59 7.39 -2.38 -0.02 0.57 16 30 H 0.01 0.30 7.49 -2.39 -0.02 0.28 16 31 H 0.06 2.28 8.07 -2.39 -0.02 2.26 16 32 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.08 2.21 8.13 -2.39 -0.02 2.19 16 34 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.21 0.18 8.06 -2.91 -0.02 0.16 16 36 H 0.21 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.12 2.72 8.06 -2.39 -0.02 2.70 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.06 2.01 8.00 -2.39 -0.02 1.99 16 Total: -1.00 -75.42 354.11 5.26 -70.16 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: 1.09 Total: 0.52 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 5.26 Total: 22.91 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -5.33 Total: -110.97 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.07 Total: -22.15 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 2.28 Total: -7.13 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.42 5.26 -70.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072928492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.336 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds