Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00119 * 2 1 4 4 H 1.48498 * 109.47103 * 239.99890 * 3 2 1 5 5 H 1.48504 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47254 * 120.00161 * 3 2 1 7 7 C 1.38808 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.47131 * 125.58959 * 0.02562 * 9 7 2 11 11 C 1.54606 * 107.36618 * 179.03928 * 10 9 7 12 12 C 1.53648 * 102.73251 * 339.24966 * 11 10 9 13 13 C 1.52371 * 116.40128 * 162.92144 * 12 11 10 14 14 N 1.47893 * 85.59363 * 95.81792 * 13 12 11 15 15 C 1.34774 * 134.34095 * 203.51042 * 14 13 12 16 16 O 1.21574 * 119.99857 * 174.44416 * 15 14 13 17 17 C 1.47724 * 120.00351 * 354.44705 * 15 14 13 18 18 C 1.39638 * 120.09883 * 352.87449 * 17 15 14 19 19 C 1.38085 * 119.89468 * 179.74546 * 18 17 15 20 20 F 1.35094 * 119.94682 * 180.24866 * 19 18 17 21 21 C 1.38780 * 120.09840 * 0.52938 * 19 18 17 22 22 F 1.35099 * 119.89386 * 179.76568 * 21 19 18 23 23 C 1.38783 * 120.20701 * 359.74096 * 21 19 18 24 24 F 1.35094 * 119.94851 * 179.97438 * 23 21 19 25 25 C 1.38075 * 120.10257 * 359.97438 * 23 21 19 26 26 C 1.47891 * 91.31377 * 23.48552 * 14 13 12 27 27 C 1.47727 * 125.58630 * 179.97438 * 9 7 2 28 28 H 0.97004 * 119.99908 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.87161 * 298.48715 * 10 9 7 30 30 H 1.08995 * 109.86440 * 59.60058 * 10 9 7 31 31 H 1.09003 * 110.75580 * 97.56016 * 11 10 9 32 32 H 1.08993 * 110.75935 * 220.93355 * 11 10 9 33 33 H 1.09000 * 113.85708 * 209.98538 * 13 12 11 34 34 H 1.09004 * 113.84720 * 341.64982 * 13 12 11 35 35 H 1.07996 * 120.04776 * 359.97438 * 18 17 15 36 36 H 1.07998 * 120.05269 * 180.02562 * 25 23 21 37 37 H 1.08997 * 113.85444 * 222.34928 * 26 14 13 38 38 H 1.09007 * 113.96600 * 90.69534 * 26 14 13 39 39 H 1.09004 * 110.40085 * 321.27772 * 27 9 7 40 40 H 1.08998 * 110.40644 * 83.57522 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 -0.1389 -2.5313 -0.0005 11 6 -0.4545 -4.0446 -0.0248 12 6 0.8479 -4.6535 -0.5669 13 6 1.0386 -6.1494 -0.3488 14 7 0.4964 -6.3021 -1.7162 15 6 -0.1187 -7.3012 -2.3795 16 8 -0.5564 -7.1096 -3.4974 17 6 -0.2613 -8.6291 -1.7481 18 6 0.3676 -8.8966 -0.5303 19 6 0.2272 -10.1376 0.0587 20 9 0.8310 -10.3959 1.2393 21 6 -0.5284 -11.1217 -0.5631 22 9 -0.6591 -12.3360 0.0145 23 6 -1.1506 -10.8622 -1.7762 24 9 -1.8844 -11.8241 -2.3772 25 6 -1.0207 -9.6223 -2.3699 26 6 0.8972 -4.9222 -2.0660 27 6 1.9360 -3.7332 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5559 -2.0803 0.8999 30 1 -0.5573 -2.0515 -0.8852 31 1 -0.6638 -4.4117 0.9799 32 1 -1.2877 -4.2547 -0.6954 33 1 2.0815 -6.4513 -0.2518 34 1 0.3983 -6.5666 0.4285 35 1 0.9597 -8.1329 -0.0482 36 1 -1.5055 -9.4211 -3.3137 37 1 0.1460 -4.3763 -2.6366 38 1 1.8966 -4.8466 -2.4948 39 1 2.8188 -3.7498 -0.6386 40 1 2.1971 -4.0320 1.0157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073005748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -60.522961 kcal Electronic energy + Delta-G solvation = -29049.839733 eV Core-core repulsion = 24418.038992 eV Total energy + Delta-G solvation = -4631.800741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.22881 -49.62573 -48.90799 -41.06868 -39.41554 -37.88436 -35.79458 -32.46658 -31.51306 -31.12427 -29.52754 -28.73337 -26.59182 -26.05722 -24.43670 -23.72705 -23.41125 -20.50061 -20.24417 -18.87323 -18.49011 -18.31080 -18.08032 -17.25167 -16.93830 -16.64868 -16.34310 -15.91435 -15.86851 -15.69493 -15.36071 -15.27843 -14.89367 -14.79674 -14.51189 -14.00101 -13.83408 -13.51446 -13.29923 -12.98669 -12.52837 -12.46054 -12.27327 -12.22030 -11.96114 -11.88269 -11.15050 -10.99284 -10.77042 -10.61163 -10.36220 -10.19312 -9.97360 -9.92006 -9.68488 -9.52906 -9.47554 -8.77716 -8.65554 -6.91128 -5.77091 -3.11361 -0.17225 0.20849 2.09592 2.47084 2.80869 3.07693 3.37184 3.41810 3.43109 3.59604 3.64425 3.79628 3.83536 4.29907 4.40776 4.52180 4.68293 4.80554 4.86864 5.04432 5.13945 5.17922 5.22488 5.33571 5.39886 5.43907 5.55833 5.66636 5.72041 5.84747 5.99652 6.05085 6.11079 6.36217 6.40422 6.54045 6.58842 7.48245 7.50492 7.53967 7.76137 7.86904 8.18609 9.15216 9.75332 10.39775 11.34350 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.002392 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.790784 B =11704.402101 C =12280.119786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.121 4.121 12 C -0.103 4.103 13 C 0.099 3.901 14 N -0.631 5.631 15 C 0.578 3.422 16 O -0.530 6.530 17 C -0.074 4.074 18 C -0.116 4.116 19 C 0.095 3.905 20 F -0.114 7.114 21 C 0.052 3.948 22 F -0.113 7.113 23 C 0.094 3.906 24 F -0.115 7.115 25 C -0.079 4.079 26 C 0.135 3.865 27 C 0.151 3.849 28 H 0.253 0.747 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -21.210 -0.599 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.159 4.159 12 C -0.105 4.105 13 C -0.023 4.023 14 N -0.365 5.365 15 C 0.367 3.633 16 O -0.407 6.407 17 C -0.078 4.078 18 C -0.135 4.135 19 C 0.075 3.925 20 F -0.092 7.092 21 C 0.031 3.969 22 F -0.091 7.091 23 C 0.073 3.927 24 F -0.093 7.093 25 C -0.099 4.099 26 C 0.014 3.986 27 C 0.024 3.976 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.187 0.813 36 H 0.185 0.815 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.578 -21.096 -1.261 21.142 hybrid contribution 0.402 0.250 0.340 0.583 sum -0.175 -20.846 -0.922 20.867 Atomic orbital electron populations 1.69940 1.04896 1.25271 1.56725 1.24799 0.95709 0.97709 1.02051 0.86202 0.78465 0.83181 0.77902 1.21145 1.21616 1.21161 1.18983 0.90396 0.82295 1.44274 0.90422 1.44514 1.01556 0.99649 1.87353 1.21226 0.84280 0.87761 1.01329 1.22563 0.94242 0.99466 0.99619 1.22475 1.00267 0.92693 0.95045 1.23371 0.99351 0.95940 0.83637 1.50121 1.56619 1.14352 1.15428 1.17431 0.78906 0.82271 0.84681 1.90828 1.48995 1.82060 1.18862 1.19684 0.98590 0.95014 0.94512 1.21934 1.00471 0.95810 0.95254 1.17153 0.97467 0.93463 0.84444 1.91603 1.80694 1.94297 1.42625 1.17821 1.02873 0.82555 0.93675 1.91584 1.94214 1.39900 1.83437 1.17128 0.96440 0.87685 0.91442 1.91595 1.74086 1.61416 1.82195 1.21258 0.97797 0.89378 1.01450 1.23055 1.00883 0.77757 0.96906 1.21219 0.93244 0.85880 0.97239 0.93626 0.93713 0.93425 0.91740 0.91864 0.88653 0.89278 0.81295 0.81452 0.89301 0.89055 0.93883 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.01 10.30 55.49 0.57 -25.44 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.05 10.28 -15.06 -0.15 -6.20 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.60 -14.03 3.41 -170.51 -0.58 -14.61 16 10 C 0.18 3.98 5.39 -2.85 -0.02 3.96 16 11 C -0.12 -1.96 6.33 -25.55 -0.16 -2.13 16 12 C -0.10 -1.46 0.99 -154.85 -0.15 -1.61 16 13 C 0.10 1.00 5.54 -3.60 -0.02 0.98 16 14 N -0.63 -7.73 3.60 -188.03 -0.68 -8.41 16 15 C 0.58 7.50 7.98 -12.39 -0.10 7.40 16 16 O -0.53 -8.66 17.09 5.30 0.09 -8.57 16 17 C -0.07 -0.75 5.87 -104.98 -0.62 -1.36 16 18 C -0.12 -0.98 9.06 -39.12 -0.35 -1.33 16 19 C 0.10 0.85 7.29 -39.44 -0.29 0.56 16 20 F -0.11 -1.08 17.17 2.25 0.04 -1.04 16 21 C 0.05 0.50 7.32 -39.18 -0.29 0.21 16 22 F -0.11 -1.18 17.08 2.25 0.04 -1.14 16 23 C 0.09 0.87 7.29 -39.44 -0.29 0.58 16 24 F -0.11 -1.13 17.17 2.25 0.04 -1.09 16 25 C -0.08 -0.74 9.57 -39.12 -0.37 -1.11 16 26 C 0.13 1.87 8.15 -3.60 -0.03 1.84 16 27 C 0.15 2.61 6.66 -3.17 -0.02 2.59 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 30 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.10 0.74 8.01 -51.93 -0.42 0.33 16 34 H 0.09 0.75 6.96 -51.93 -0.36 0.39 16 35 H 0.17 1.20 4.09 -52.49 -0.21 0.99 16 36 H 0.17 1.49 7.66 -52.49 -0.40 1.09 16 37 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 38 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 39 H 0.04 0.72 7.99 -51.93 -0.42 0.30 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -30.29 346.16 -7.48 -37.76 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.23 Total: -3.09 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.96 Total: 4.13 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.69 Total: -48.45 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.12 Total: -3.27 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.29 -7.48 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073005748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.760 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds