Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00441 * 2 1 4 4 H 1.48499 * 109.46968 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46887 * 239.99607 * 3 2 1 6 6 H 1.48500 * 109.47067 * 120.00044 * 3 2 1 7 7 C 1.38811 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00201 * 155.21312 * 7 2 1 9 9 N 1.36935 * 120.00110 * 335.21866 * 7 2 1 10 10 C 1.46617 * 119.89044 * 331.66382 * 9 7 2 11 11 C 1.53096 * 108.01062 * 237.30351 * 10 9 7 12 12 C 1.53021 * 109.44993 * 301.02430 * 11 10 9 13 13 H 1.08993 * 113.42014 * 275.04246 * 12 11 10 14 14 C 1.54653 * 110.83664 * 143.88784 * 12 11 10 15 15 N 1.47801 * 85.79180 * 270.23321 * 14 12 11 16 16 C 1.34783 * 135.01000 * 153.79267 * 15 14 12 17 17 O 1.21602 * 120.00029 * 180.02562 * 16 15 14 18 18 C 1.47418 * 119.99833 * 0.02562 * 16 15 14 19 19 C 1.39982 * 120.15931 * 89.72611 * 18 16 15 20 20 F 1.35093 * 120.08264 * 0.02562 * 19 18 16 21 21 C 1.38097 * 119.82996 * 179.76416 * 19 18 16 22 22 C 1.38601 * 120.16875 * 0.51177 * 21 19 18 23 23 F 1.35097 * 119.84280 * 179.71714 * 22 21 19 24 24 C 1.38608 * 120.32785 * 359.74325 * 22 21 19 25 25 C 1.38101 * 120.16163 * 359.97438 * 24 22 21 26 26 F 1.35101 * 120.07930 * 180.02562 * 25 24 22 27 27 C 1.46816 * 89.97869 * 333.80675 * 15 14 12 28 28 H 1.08993 * 111.56657 * 274.48506 * 27 15 14 29 29 C 1.45680 * 119.88911 * 151.39243 * 9 7 2 30 30 H 0.96996 * 120.00846 * 174.28491 * 1 2 3 31 31 H 1.08996 * 109.75429 * 356.93911 * 10 9 7 32 32 H 1.09001 * 109.75028 * 117.67785 * 10 9 7 33 33 H 1.08998 * 109.47331 * 61.01306 * 11 10 9 34 34 H 1.08996 * 109.47515 * 181.03202 * 11 10 9 35 35 H 1.08993 * 113.81921 * 24.45209 * 14 12 11 36 36 H 1.09005 * 113.81649 * 156.01332 * 14 12 11 37 37 H 1.08000 * 119.92086 * 180.25438 * 21 19 18 38 38 H 1.07994 * 119.91650 * 179.97438 * 24 22 21 39 39 H 1.09007 * 108.71559 * 261.76460 * 29 9 7 40 40 H 1.09001 * 108.71834 * 19.78662 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0155 -1.2456 -0.3916 9 7 1.4200 -2.3332 0.4981 10 6 0.3998 -2.2247 1.5456 11 6 0.8659 -3.0502 2.7477 12 6 1.0624 -4.5064 2.3204 13 1 0.1450 -5.0942 2.3506 14 6 2.2681 -5.1374 3.0551 15 7 3.0772 -4.6485 1.9189 16 6 4.3678 -4.2995 1.7480 17 8 4.7565 -3.9216 0.6595 18 6 5.3081 -4.3758 2.8808 19 6 6.0213 -5.5554 3.1245 20 9 5.8504 -6.6282 2.3214 21 6 6.9041 -5.6179 4.1846 22 6 7.0769 -4.5200 5.0127 23 9 7.9380 -4.5902 6.0513 24 6 6.3702 -3.3503 4.7809 25 6 5.4883 -3.2710 3.7211 26 9 4.8007 -2.1299 3.4964 27 6 1.8922 -4.7002 1.0536 28 1 1.7499 -5.6935 0.6281 29 6 1.8036 -3.6399 -0.0192 30 1 -0.4851 -0.8358 -0.0836 31 1 0.2820 -1.1815 1.8384 32 1 -0.5493 -2.6140 1.1771 33 1 1.8093 -2.6502 3.1193 34 1 0.1145 -3.0010 3.5357 35 1 2.5061 -4.6568 4.0040 36 1 2.2206 -6.2241 3.1264 37 1 7.4582 -6.5259 4.3715 38 1 6.5097 -2.4990 5.4305 39 1 1.0700 -3.9507 -0.7632 40 1 2.7752 -3.5522 -0.5054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084622223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -70.408671 kcal Electronic energy + Delta-G solvation = -30812.391116 eV Core-core repulsion = 26180.161699 eV Total energy + Delta-G solvation = -4632.229417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.55133 -49.47628 -49.24757 -40.73005 -39.04158 -37.57022 -35.56283 -32.04300 -31.21408 -31.06182 -31.01701 -28.62979 -26.93068 -24.44321 -23.82002 -23.58498 -22.90199 -21.24750 -20.33166 -18.97714 -18.27003 -18.21966 -17.67245 -16.83012 -16.71138 -16.37442 -16.25969 -16.00514 -15.75133 -15.63737 -15.43329 -15.27126 -14.74323 -14.21217 -14.06899 -13.71961 -13.50375 -13.39665 -13.06315 -12.86741 -12.65971 -12.55973 -12.30429 -12.05065 -11.87528 -11.82770 -11.21065 -10.86819 -10.66484 -10.52558 -10.12457 -9.98106 -9.93630 -9.53636 -9.38136 -9.26393 -9.16697 -8.50076 -8.27101 -6.79838 -5.99033 -3.14713 0.20213 0.38601 2.58476 2.60550 2.88676 3.09185 3.56873 3.59113 3.71522 3.77381 3.77658 4.08252 4.28627 4.34532 4.50494 4.67444 5.01807 5.07496 5.18892 5.20089 5.22545 5.27521 5.31029 5.38797 5.45148 5.47486 5.59645 5.70914 5.82610 5.86040 6.08452 6.16648 6.34785 6.43902 6.49714 6.69579 6.85441 7.06869 7.22373 7.85964 8.17353 8.24939 8.67315 9.21699 9.94031 10.32799 11.29510 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.004330 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.127074 B = 6465.161049 C = 7410.283811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.060 2.940 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.338 4.338 8 H 0.055 0.945 9 N -0.589 5.589 10 C 0.149 3.851 11 C -0.120 4.120 12 C -0.105 4.105 13 H 0.092 0.908 14 C 0.094 3.906 15 N -0.618 5.618 16 C 0.589 3.411 17 O -0.507 6.507 18 C -0.197 4.197 19 C 0.192 3.808 20 F -0.113 7.113 21 C -0.206 4.206 22 C 0.174 3.826 23 F -0.119 7.119 24 C -0.204 4.204 25 C 0.200 3.800 26 F -0.099 7.099 27 C 0.133 3.867 28 H 0.081 0.919 29 C 0.143 3.857 30 H 0.267 0.733 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.020 0.980 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.195 -14.079 13.621 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.225 4.225 3 Si 0.890 3.110 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.073 0.927 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.160 4.160 12 C -0.124 4.124 13 H 0.110 0.890 14 C -0.028 4.028 15 N -0.353 5.353 16 C 0.375 3.625 17 O -0.382 6.382 18 C -0.202 4.202 19 C 0.172 3.828 20 F -0.091 7.091 21 C -0.225 4.225 22 C 0.154 3.846 23 F -0.097 7.097 24 C -0.224 4.224 25 C 0.179 3.821 26 F -0.077 7.077 27 C 0.030 3.970 28 H 0.099 0.901 29 C 0.016 3.984 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.038 0.962 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.464 -12.141 13.022 20.163 hybrid contribution 0.407 -1.875 -0.005 1.918 sum 9.871 -14.016 13.016 21.525 Atomic orbital electron populations 1.70789 1.06487 1.30123 1.48654 1.25745 0.96487 1.01216 0.99094 0.83585 0.74827 0.76218 0.76321 1.21125 1.22003 1.22148 1.20002 0.97382 0.88264 1.41061 0.92723 1.43567 1.46048 1.00996 1.40591 1.20884 0.90237 0.99810 0.86812 1.21935 1.01405 0.92880 0.99761 1.22881 0.96186 0.98524 0.94823 0.88959 1.23651 0.88840 0.98961 0.91391 1.49741 1.06428 1.63989 1.15121 1.17002 0.80087 0.78542 0.86861 1.90862 1.76109 1.45636 1.25562 1.20141 1.04767 0.94291 1.01006 1.16752 0.94799 0.82384 0.88908 1.91598 1.93801 1.52426 1.71278 1.20927 1.03540 1.01138 0.96940 1.16875 0.89238 0.93123 0.85363 1.91579 1.66789 1.96629 1.54751 1.21041 1.00313 1.00056 1.00964 1.16892 0.90808 0.81918 0.92470 1.91725 1.76402 1.46015 1.93542 1.22527 0.80354 0.99932 0.94202 0.90125 1.20250 1.00107 0.85804 0.92281 0.92172 0.89518 0.96320 0.91963 0.92463 0.90388 0.89846 0.82137 0.81950 0.96228 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 12.33 55.49 0.68 -27.03 16 2 C -0.02 -0.71 4.66 -17.43 -0.08 -0.79 16 3 Si 1.06 26.42 29.99 -169.99 -5.10 21.32 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.34 -9.86 9.42 -15.06 -0.14 -10.00 16 8 H 0.05 1.70 7.90 -52.49 -0.41 1.28 16 9 N -0.59 -15.03 2.85 -174.88 -0.50 -15.53 16 10 C 0.15 3.40 4.65 -3.93 -0.02 3.38 16 11 C -0.12 -2.15 5.66 -26.67 -0.15 -2.30 16 12 C -0.10 -1.55 4.39 -89.96 -0.40 -1.94 16 13 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.09 1.19 7.95 -3.01 -0.02 1.17 16 15 N -0.62 -10.53 3.35 -175.10 -0.59 -11.12 16 16 C 0.59 11.16 6.70 -12.52 -0.08 11.07 16 17 O -0.51 -11.84 16.25 5.28 0.09 -11.75 16 18 C -0.20 -2.93 5.41 -104.85 -0.57 -3.50 16 19 C 0.19 2.31 7.29 -38.98 -0.28 2.03 16 20 F -0.11 -1.45 16.83 2.25 0.04 -1.41 16 21 C -0.21 -1.86 9.99 -39.50 -0.39 -2.26 16 22 C 0.17 1.59 7.30 -39.31 -0.29 1.30 16 23 F -0.12 -1.04 17.26 2.25 0.04 -1.00 16 24 C -0.20 -2.07 9.99 -39.50 -0.39 -2.46 16 25 C 0.20 2.76 7.29 -38.98 -0.28 2.48 16 26 F -0.10 -1.69 16.83 2.25 0.04 -1.66 16 27 C 0.13 2.31 4.23 -69.43 -0.29 2.01 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 C 0.14 3.18 6.19 -5.44 -0.03 3.15 16 30 H 0.27 8.05 6.78 -40.82 -0.28 7.78 16 31 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 32 H 0.02 0.42 7.99 -51.93 -0.41 0.01 16 33 H 0.06 1.23 7.69 -51.93 -0.40 0.83 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.91 7.97 -51.93 -0.41 0.50 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.83 6.35 -51.93 -0.33 1.50 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -34.27 345.69 -7.84 -42.11 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.32 Total: -2.50 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -3.43 Total: 3.35 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.40 Total: -53.67 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.11 Total: -4.06 kcal Atomic # 14 Polarization: 26.42 SS G_CDS: -5.10 Total: 21.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.27 -7.84 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084622223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.295 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds