Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00441 * 2 1 4 4 H 1.48499 * 109.46968 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46887 * 239.99607 * 3 2 1 6 6 H 1.48500 * 109.47067 * 120.00044 * 3 2 1 7 7 C 1.38811 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00201 * 155.21312 * 7 2 1 9 9 N 1.36935 * 120.00110 * 335.21866 * 7 2 1 10 10 C 1.46617 * 119.89044 * 331.66382 * 9 7 2 11 11 C 1.53096 * 108.01062 * 237.30351 * 10 9 7 12 12 C 1.53021 * 109.44993 * 301.02430 * 11 10 9 13 13 H 1.08993 * 113.42014 * 275.04246 * 12 11 10 14 14 C 1.54653 * 110.83664 * 143.88784 * 12 11 10 15 15 N 1.47801 * 85.79180 * 270.23321 * 14 12 11 16 16 C 1.34783 * 135.01000 * 153.79267 * 15 14 12 17 17 O 1.21602 * 120.00029 * 180.02562 * 16 15 14 18 18 C 1.47418 * 119.99833 * 0.02562 * 16 15 14 19 19 C 1.39982 * 120.15931 * 89.72611 * 18 16 15 20 20 F 1.35093 * 120.08264 * 0.02562 * 19 18 16 21 21 C 1.38097 * 119.82996 * 179.76416 * 19 18 16 22 22 C 1.38601 * 120.16875 * 0.51177 * 21 19 18 23 23 F 1.35097 * 119.84280 * 179.71714 * 22 21 19 24 24 C 1.38608 * 120.32785 * 359.74325 * 22 21 19 25 25 C 1.38101 * 120.16163 * 359.97438 * 24 22 21 26 26 F 1.35101 * 120.07930 * 180.02562 * 25 24 22 27 27 C 1.46816 * 89.97869 * 333.80675 * 15 14 12 28 28 H 1.08993 * 111.56657 * 274.48506 * 27 15 14 29 29 C 1.45680 * 119.88911 * 151.39243 * 9 7 2 30 30 H 0.96996 * 120.00846 * 174.28491 * 1 2 3 31 31 H 1.08996 * 109.75429 * 356.93911 * 10 9 7 32 32 H 1.09001 * 109.75028 * 117.67785 * 10 9 7 33 33 H 1.08998 * 109.47331 * 61.01306 * 11 10 9 34 34 H 1.08996 * 109.47515 * 181.03202 * 11 10 9 35 35 H 1.08993 * 113.81921 * 24.45209 * 14 12 11 36 36 H 1.09005 * 113.81649 * 156.01332 * 14 12 11 37 37 H 1.08000 * 119.92086 * 180.25438 * 21 19 18 38 38 H 1.07994 * 119.91650 * 179.97438 * 24 22 21 39 39 H 1.09007 * 108.71559 * 261.76460 * 29 9 7 40 40 H 1.09001 * 108.71834 * 19.78662 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0155 -1.2456 -0.3916 9 7 1.4200 -2.3332 0.4981 10 6 0.3998 -2.2247 1.5456 11 6 0.8659 -3.0502 2.7477 12 6 1.0624 -4.5064 2.3204 13 1 0.1450 -5.0942 2.3506 14 6 2.2681 -5.1374 3.0551 15 7 3.0772 -4.6485 1.9189 16 6 4.3678 -4.2995 1.7480 17 8 4.7565 -3.9216 0.6595 18 6 5.3081 -4.3758 2.8808 19 6 6.0213 -5.5554 3.1245 20 9 5.8504 -6.6282 2.3214 21 6 6.9041 -5.6179 4.1846 22 6 7.0769 -4.5200 5.0127 23 9 7.9380 -4.5902 6.0513 24 6 6.3702 -3.3503 4.7809 25 6 5.4883 -3.2710 3.7211 26 9 4.8007 -2.1299 3.4964 27 6 1.8922 -4.7002 1.0536 28 1 1.7499 -5.6935 0.6281 29 6 1.8036 -3.6399 -0.0192 30 1 -0.4851 -0.8358 -0.0836 31 1 0.2820 -1.1815 1.8384 32 1 -0.5493 -2.6140 1.1771 33 1 1.8093 -2.6502 3.1193 34 1 0.1145 -3.0010 3.5357 35 1 2.5061 -4.6568 4.0040 36 1 2.2206 -6.2241 3.1264 37 1 7.4582 -6.5259 4.3715 38 1 6.5097 -2.4990 5.4305 39 1 1.0700 -3.9507 -0.7632 40 1 2.7752 -3.5522 -0.5054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084622223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -92.296171 kcal Electronic energy + Delta-G solvation = -30813.340230 eV Core-core repulsion = 26180.161699 eV Total energy + Delta-G solvation = -4633.178531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.41873 -50.39449 -50.28097 -42.07066 -40.13014 -38.90182 -37.44101 -33.80141 -32.76049 -32.44584 -31.92644 -30.06863 -28.59568 -25.81859 -25.48807 -24.48332 -24.30250 -22.80091 -21.72229 -19.95519 -19.78877 -19.33518 -19.19298 -18.29862 -17.76738 -17.38501 -17.22090 -17.15241 -16.96723 -16.68347 -16.54692 -16.31102 -16.12451 -15.81243 -15.54074 -15.46755 -15.10695 -14.93615 -14.54452 -14.22837 -13.89684 -13.61192 -13.55121 -13.32980 -13.16038 -13.01937 -12.83587 -12.65448 -12.56856 -12.06955 -11.96142 -11.80752 -11.61440 -11.32616 -10.84866 -10.52525 -10.25238 -10.21096 -9.80567 -8.92954 -8.28723 -5.43043 -0.71416 -0.47674 1.26160 1.49590 1.55914 1.56869 1.77045 1.82308 2.18008 2.58268 2.81788 2.89078 2.99082 3.13283 3.30757 3.44766 3.51964 3.53944 3.78944 3.94765 4.17422 4.19985 4.30644 4.33495 4.34571 4.39812 4.43128 4.46430 4.58323 4.62847 4.67388 4.79410 4.93480 4.95138 5.06087 5.09525 5.24295 5.32236 5.52121 5.81099 6.38587 6.56722 6.87249 7.07414 7.78018 8.13817 8.95450 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.004330 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.127074 B = 6465.161049 C = 7410.283811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.065 4.065 3 Si 1.104 2.896 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.348 4.348 8 H 0.020 0.980 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.110 4.110 12 C -0.096 4.096 13 H 0.137 0.863 14 C 0.110 3.890 15 N -0.625 5.625 16 C 0.577 3.423 17 O -0.575 6.575 18 C -0.217 4.217 19 C 0.188 3.812 20 F -0.119 7.119 21 C -0.176 4.176 22 C 0.190 3.810 23 F -0.108 7.108 24 C -0.184 4.184 25 C 0.174 3.826 26 F -0.130 7.130 27 C 0.121 3.879 28 H 0.116 0.884 29 C 0.144 3.856 30 H 0.257 0.743 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.197 0.803 38 H 0.186 0.814 39 H 0.018 0.982 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -16.498 17.004 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.262 4.262 3 Si 0.929 3.071 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.479 4.479 8 H 0.038 0.962 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.149 4.149 12 C -0.115 4.115 13 H 0.155 0.845 14 C -0.011 4.011 15 N -0.359 5.359 16 C 0.366 3.634 17 O -0.455 6.455 18 C -0.222 4.222 19 C 0.168 3.832 20 F -0.097 7.097 21 C -0.195 4.195 22 C 0.170 3.830 23 F -0.086 7.086 24 C -0.203 4.203 25 C 0.154 3.846 26 F -0.108 7.108 27 C 0.018 3.982 28 H 0.134 0.866 29 C 0.017 3.983 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.215 0.785 38 H 0.203 0.797 39 H 0.035 0.965 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.104 -14.615 16.460 24.220 hybrid contribution 0.234 -1.175 -1.051 1.594 sum 10.338 -15.791 15.409 24.365 Atomic orbital electron populations 1.70888 1.06896 1.29473 1.50289 1.26932 0.96673 1.03933 0.98680 0.82998 0.74103 0.73060 0.76901 1.20315 1.21044 1.21234 1.19977 0.96096 0.90360 1.41420 0.96171 1.43727 1.46455 1.01142 1.41641 1.20815 0.89798 0.98681 0.88124 1.21765 1.00899 0.94137 0.98052 1.22865 0.98629 0.96958 0.93031 0.84539 1.23901 0.85471 1.01428 0.90298 1.50008 1.05990 1.63117 1.16739 1.17695 0.81132 0.77445 0.87161 1.90813 1.77555 1.48675 1.28442 1.19966 1.05472 0.96188 1.00541 1.16781 0.95294 0.81386 0.89746 1.91583 1.93940 1.52462 1.71739 1.21189 1.01464 1.02184 0.94659 1.16760 0.88529 0.92524 0.85172 1.91624 1.66281 1.96510 1.54208 1.21181 0.98440 1.01248 0.99447 1.17119 0.92452 0.80934 0.94142 1.91645 1.77490 1.47638 1.94028 1.22646 0.82038 0.99371 0.94152 0.86600 1.20238 0.97593 0.86144 0.94306 0.93292 0.93445 0.96124 0.94444 0.88913 0.89101 0.85299 0.78547 0.79704 0.96477 0.95027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 12.33 21.65 0.27 -58.00 16 2 C -0.07 -3.95 4.66 84.86 0.40 -3.56 16 3 Si 1.10 55.32 29.99 68.60 2.06 57.38 16 4 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.35 -21.67 9.42 84.03 0.79 -20.88 16 8 H 0.02 1.38 7.90 -2.91 -0.02 1.35 16 9 N -0.61 -32.56 2.85 -707.20 -2.02 -34.58 16 10 C 0.15 7.09 4.65 86.39 0.40 7.49 16 11 C -0.11 -3.77 5.66 30.63 0.17 -3.60 16 12 C -0.10 -2.53 4.39 -10.31 -0.05 -2.57 16 13 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 14 C 0.11 2.36 7.95 86.34 0.69 3.05 16 15 N -0.63 -21.00 3.35 -826.16 -2.76 -23.76 16 16 C 0.58 22.67 6.70 86.66 0.58 23.25 16 17 O -0.57 -29.02 16.25 -4.04 -0.07 -29.09 16 18 C -0.22 -6.41 5.41 -20.02 -0.11 -6.52 16 19 C 0.19 4.16 7.29 22.66 0.17 4.32 16 20 F -0.12 -2.85 16.83 44.97 0.76 -2.09 16 21 C -0.18 -2.47 9.99 22.32 0.22 -2.25 16 22 C 0.19 2.72 7.30 22.44 0.16 2.89 16 23 F -0.11 -1.38 17.26 44.97 0.78 -0.61 16 24 C -0.18 -3.28 9.99 22.33 0.22 -3.06 16 25 C 0.17 4.76 7.29 22.66 0.17 4.93 16 26 F -0.13 -4.65 16.83 44.97 0.76 -3.90 16 27 C 0.12 4.11 4.23 43.85 0.19 4.29 16 28 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 29 C 0.14 6.75 6.19 85.91 0.53 7.28 16 30 H 0.26 16.14 6.78 -92.71 -0.63 15.51 16 31 H 0.05 2.58 6.07 -2.39 -0.01 2.57 16 32 H 0.02 0.95 7.99 -2.39 -0.02 0.93 16 33 H 0.04 1.47 7.69 -2.39 -0.02 1.45 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.09 1.79 7.97 -2.39 -0.02 1.77 16 36 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.03 1.72 6.35 -2.39 -0.02 1.71 16 Total: -1.00 -84.30 345.69 5.54 -78.76 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 1.24 Total: 0.81 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 4.53 Total: 15.07 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -4.52 Total: -116.34 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.07 Total: -29.09 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 2.29 Total: -6.59 kcal Atomic # 14 Polarization: 55.32 SS G_CDS: 2.06 Total: 57.38 kcal Total: -84.30 5.54 -78.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084622223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.535 kcal (2) G-P(sol) polarization free energy of solvation -84.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds