Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86792 * 120.00460 * 2 1 4 4 H 1.48509 * 109.47335 * 270.00413 * 3 2 1 5 5 H 1.48502 * 109.47212 * 29.99730 * 3 2 1 6 6 H 1.48500 * 109.47594 * 150.00152 * 3 2 1 7 7 C 1.38806 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99515 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00113 * 179.97438 * 7 2 1 10 10 C 1.81006 * 99.99821 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46821 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00297 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00011 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00416 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47130 * 179.97438 * 14 13 11 16 16 H 1.08997 * 112.85704 * 316.19647 * 15 14 13 17 17 C 1.53785 * 113.69207 * 87.47169 * 15 14 13 18 18 C 1.53775 * 87.08562 * 139.98781 * 17 15 14 19 19 H 1.09006 * 113.69159 * 89.12668 * 18 17 15 20 20 N 1.46500 * 113.61537 * 220.02072 * 18 17 15 21 21 C 1.39122 * 119.99645 * 252.49686 * 20 18 17 22 22 N 1.32568 * 120.11139 * 0.02562 * 21 20 18 23 23 C 1.32307 * 119.94201 * 179.97438 * 22 21 20 24 24 C 1.38062 * 120.16738 * 359.97438 * 23 22 21 25 25 N 1.32344 * 120.21892 * 0.27677 * 24 23 22 26 26 C 1.32074 * 120.05740 * 359.44585 * 25 24 23 27 27 F 1.35104 * 120.08274 * 180.26996 * 26 25 24 28 28 C 1.53783 * 87.08266 * 334.56791 * 18 17 15 29 29 H 0.96993 * 119.99617 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47348 * 60.00066 * 10 9 7 31 31 H 1.09000 * 109.46828 * 299.99302 * 10 9 7 32 32 H 0.97004 * 119.99551 * 359.97438 * 13 11 10 33 33 H 1.09005 * 109.46692 * 60.00181 * 14 13 11 34 34 H 1.08995 * 109.47122 * 300.00426 * 14 13 11 35 35 H 1.09007 * 113.61234 * 25.43417 * 17 15 14 36 36 H 1.09003 * 113.61253 * 254.54190 * 17 15 14 37 37 H 0.96990 * 120.00234 * 72.49766 * 20 18 17 38 38 H 1.08000 * 119.91534 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.88548 * 179.97438 * 24 23 22 40 40 H 1.08999 * 113.61673 * 139.98219 * 28 18 17 41 41 H 1.08998 * 113.61107 * 270.88740 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4400 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9847 0.0001 11 6 5.5730 -3.2327 0.0002 12 8 6.3440 -2.2965 -0.0003 13 7 6.0456 -4.4949 0.0010 14 6 7.4906 -4.7360 0.0005 15 6 7.7562 -6.2427 0.0022 16 1 7.1162 -6.7847 0.6984 17 6 7.8015 -6.8637 -1.4040 18 6 8.9784 -7.7176 -0.9034 19 1 8.6739 -8.6632 -0.4547 20 7 10.0504 -7.8750 -1.8895 21 6 10.2336 -9.0970 -2.5286 22 7 9.4390 -10.1203 -2.2475 23 6 9.6159 -11.2809 -2.8577 24 6 10.6258 -11.4291 -3.7873 25 7 11.4259 -10.4133 -4.0694 26 6 11.2538 -9.2493 -3.4695 27 9 12.0669 -8.2105 -3.7610 28 6 9.2456 -6.6056 0.1247 29 1 -0.4849 0.8400 0.0004 30 1 3.6433 -3.4319 -0.8895 31 1 3.6440 -3.4315 0.8905 32 1 5.4289 -5.2436 0.0018 33 1 7.9339 -4.2883 0.8901 34 1 7.9332 -4.2896 -0.8899 35 1 8.0771 -6.1555 -2.1854 36 1 6.9144 -7.4461 -1.6529 37 1 10.6324 -7.1273 -2.0967 38 1 8.9686 -12.1143 -2.6280 39 1 10.7664 -12.3786 -4.2824 40 1 9.5243 -6.9795 1.1099 41 1 9.9160 -5.8268 -0.2388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091325560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -5.226941 kcal Electronic energy + Delta-G solvation = -25104.320121 eV Core-core repulsion = 21061.050333 eV Total energy + Delta-G solvation = -4043.269788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -49.48263 -41.47240 -40.10019 -38.94185 -36.03436 -34.41827 -33.73696 -32.44765 -30.60602 -29.75124 -27.29144 -26.19015 -25.62772 -25.21242 -24.33546 -22.22120 -20.75237 -20.10951 -18.80844 -18.50568 -18.23426 -17.80352 -16.86771 -16.51041 -16.41158 -15.90079 -15.55670 -15.28858 -15.21931 -14.94537 -14.64912 -14.52260 -14.00028 -13.86271 -13.73671 -13.33510 -12.97994 -12.95897 -12.80834 -12.60630 -12.17262 -12.07431 -11.88622 -11.54711 -11.28543 -11.18157 -11.01628 -10.83047 -10.60590 -10.51562 -9.86631 -9.79230 -9.53762 -9.03201 -8.97294 -8.51260 -8.39510 -6.92958 -6.29906 -4.01689 0.23173 0.58151 2.31764 2.75509 2.95293 2.96112 3.06916 3.29061 3.33217 3.49750 3.61837 3.64302 3.72012 3.99638 4.14005 4.32345 4.33828 4.36181 4.50143 4.60512 4.72824 4.87867 4.93460 5.04235 5.09191 5.23167 5.24304 5.32036 5.35904 5.48721 5.57301 5.68399 5.73613 5.76927 5.95332 6.00220 6.32921 6.42764 6.51620 6.85731 7.26656 7.59055 7.93179 8.40588 8.47439 9.16304 10.79316 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027288 B = 0.001606 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.830676 B =17425.508308 C =17628.917469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.736 5.736 14 C 0.134 3.866 15 C -0.119 4.119 16 H 0.103 0.897 17 C -0.148 4.148 18 C 0.132 3.868 19 H 0.121 0.879 20 N -0.696 5.696 21 C 0.354 3.646 22 N -0.479 5.479 23 C 0.098 3.902 24 C 0.009 3.991 25 N -0.431 5.431 26 C 0.194 3.806 27 F -0.108 7.108 28 C -0.137 4.137 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.400 0.600 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.179 0.821 39 H 0.177 0.823 40 H 0.080 0.920 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.735 -25.684 -3.268 33.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.396 6.396 13 N -0.390 5.390 14 C 0.010 3.990 15 C -0.138 4.138 16 H 0.121 0.879 17 C -0.187 4.187 18 C 0.027 3.973 19 H 0.139 0.861 20 N -0.328 5.328 21 C 0.112 3.888 22 N -0.202 5.202 23 C -0.062 4.062 24 C -0.150 4.150 25 N -0.150 5.150 26 C 0.029 3.971 27 F -0.088 7.088 28 C -0.176 4.176 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.234 0.766 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.196 0.804 39 H 0.194 0.806 40 H 0.099 0.901 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.749 -23.959 -3.133 33.187 hybrid contribution -0.726 -0.270 -0.283 0.825 sum 22.023 -24.229 -3.415 32.920 Atomic orbital electron populations 1.69938 1.05909 1.27767 1.48051 1.24716 0.94456 0.98969 0.93174 0.86732 0.81890 0.83269 0.79934 1.19215 1.19929 1.15936 1.22320 0.88274 0.97542 1.58807 0.89384 1.84790 1.09283 1.00118 1.97428 1.23280 0.94059 1.04353 1.05794 1.20290 0.90589 0.82326 0.75237 1.90700 1.58807 1.42259 1.47787 1.45946 1.07433 1.08011 1.77633 1.21236 0.81700 0.93717 1.02381 1.22592 0.97285 0.95684 0.98288 0.87932 1.23623 0.99000 0.99166 0.96873 1.22622 0.86854 0.99092 0.88730 0.86141 1.44709 1.36095 1.08909 1.43052 1.19142 0.90276 0.89096 0.90298 1.68101 1.25688 0.99426 1.26991 1.23584 0.96228 0.94554 0.91816 1.23213 0.94014 0.97788 1.00029 1.67599 1.26235 0.98581 1.22592 1.18429 0.93117 0.86242 0.99352 1.91624 1.71307 1.53296 1.92528 1.23370 0.96430 0.98004 0.99802 0.91940 0.88522 0.88461 0.76641 0.91378 0.91503 0.89374 0.90554 0.74633 0.80401 0.80646 0.90105 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.76 27.74 -169.99 -4.71 17.04 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 11 C 0.53 9.15 7.85 -10.98 -0.09 9.07 16 12 O -0.52 -11.09 15.86 5.56 0.09 -11.00 16 13 N -0.74 -8.68 5.56 -60.30 -0.33 -9.02 16 14 C 0.13 1.31 5.51 -4.05 -0.02 1.28 16 15 C -0.12 -0.74 3.75 -89.80 -0.34 -1.08 16 16 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 17 C -0.15 -0.94 7.43 -25.92 -0.19 -1.13 16 18 C 0.13 0.76 4.28 -67.12 -0.29 0.48 16 19 H 0.12 0.75 7.43 -51.93 -0.39 0.36 16 20 N -0.70 -4.47 5.51 -52.94 -0.29 -4.77 16 21 C 0.35 2.82 7.50 -154.58 -1.16 1.66 16 22 N -0.48 -3.56 9.30 -12.17 -0.11 -3.67 16 23 C 0.10 0.49 11.21 -17.41 -0.20 0.29 16 24 C 0.01 0.05 11.21 -17.40 -0.19 -0.14 16 25 N -0.43 -3.84 10.50 -13.24 -0.14 -3.98 16 26 C 0.19 1.75 8.47 -16.93 -0.14 1.60 16 27 F -0.11 -1.00 16.68 2.25 0.04 -0.96 16 28 C -0.14 -0.71 7.39 -25.91 -0.19 -0.90 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 31 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.40 3.59 8.47 -40.82 -0.35 3.24 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 35 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.42 2.24 8.22 -40.82 -0.34 1.91 16 38 H 0.18 0.24 8.06 -52.49 -0.42 -0.19 16 39 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -36.19 370.16 -8.74 -44.93 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.26 Total: 0.15 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.37 Total: -2.99 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.10 Total: -47.15 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.19 -8.74 -44.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091325560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.705 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds