Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 120.00214 * 2 1 4 4 H 1.48501 * 109.46952 * 270.00047 * 3 2 1 5 5 H 1.48498 * 109.47435 * 30.00018 * 3 2 1 6 6 H 1.48497 * 109.47171 * 149.99963 * 3 2 1 7 7 C 1.38806 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99707 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99839 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00028 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99963 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99919 * 180.02562 * 11 10 9 14 14 C 1.47619 * 118.74331 * 179.97438 * 13 11 10 15 15 C 1.53802 * 111.29513 * 138.31703 * 14 13 11 16 16 C 1.51327 * 109.63110 * 319.98162 * 15 14 13 17 17 N 1.46199 * 109.10467 * 92.39800 * 16 15 14 18 18 C 1.38570 * 110.99944 * 144.77853 * 17 16 15 19 19 C 1.39461 * 120.51185 * 187.08193 * 18 17 16 20 20 C 1.38475 * 118.31110 * 180.02562 * 19 18 17 21 21 F 1.35106 * 120.43141 * 179.72317 * 20 19 18 22 22 N 1.32788 * 119.13793 * 359.97438 * 20 19 18 23 23 C 1.31763 * 120.96132 * 0.02562 * 22 20 19 24 24 N 1.31763 * 121.86350 * 0.02562 * 23 22 20 25 25 C 1.41452 * 116.34092 * 272.97770 * 17 16 15 26 26 C 1.44874 * 118.74777 * 359.97438 * 13 11 10 27 27 H 0.97003 * 120.00113 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47111 * 60.00040 * 10 9 7 29 29 H 1.08993 * 109.47041 * 300.00003 * 10 9 7 30 30 H 1.08997 * 109.11015 * 258.78348 * 14 13 11 31 31 H 1.08994 * 109.11213 * 17.85201 * 14 13 11 32 32 H 1.08999 * 109.44233 * 80.01137 * 15 14 13 33 33 H 1.09004 * 109.44010 * 199.94168 * 15 14 13 34 34 H 1.09003 * 109.52513 * 332.51068 * 16 15 14 35 35 H 1.08999 * 109.53514 * 212.28936 * 16 15 14 36 36 H 1.08000 * 120.84436 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.06668 * 179.97438 * 23 22 20 38 38 H 1.09005 * 109.37987 * 183.63759 * 25 17 16 39 39 H 1.09002 * 109.38426 * 303.31916 * 25 17 16 40 40 H 1.08999 * 109.43943 * 149.66153 * 26 13 11 41 41 H 1.08999 * 109.43701 * 29.79329 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1374 0.0005 9 16 3.7722 -1.2022 0.0012 10 6 4.0864 -2.9847 0.0025 11 6 5.5729 -3.2328 0.0026 12 8 6.3439 -2.2966 0.0024 13 7 6.0454 -4.4950 0.0030 14 6 7.5065 -4.7060 0.0026 15 6 7.9067 -5.8447 0.9559 16 6 7.0776 -5.7650 2.2193 17 7 5.8891 -6.6024 2.0653 18 6 5.5434 -7.1998 3.2669 19 6 4.5288 -8.1552 3.3165 20 6 4.2203 -8.7226 4.5415 21 9 3.2412 -9.6483 4.6398 22 7 4.8959 -8.3412 5.6192 23 6 5.8492 -7.4353 5.5362 24 7 6.1737 -6.8699 4.3912 25 6 4.7653 -5.9920 1.4608 26 6 5.1002 -5.5929 0.0039 27 1 -0.4850 0.8401 0.0004 28 1 3.6438 -3.4323 -0.8873 29 1 3.6432 -3.4311 0.8926 30 1 7.8306 -4.9558 -1.0077 31 1 7.9999 -3.7867 0.3176 32 1 7.7333 -6.8040 0.4683 33 1 8.9629 -5.7518 1.2087 34 1 6.7757 -4.7320 2.3924 35 1 7.6666 -6.1203 3.0648 36 1 3.9965 -8.4447 2.4225 37 1 6.3789 -7.1476 6.4323 38 1 3.9296 -6.6919 1.4614 39 1 4.4898 -5.1014 2.0257 40 1 5.5356 -6.4469 -0.5150 41 1 4.1873 -5.2860 -0.5066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095164296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = 4.300936 kcal Electronic energy + Delta-G solvation = -27116.158796 eV Core-core repulsion = 23073.302168 eV Total energy + Delta-G solvation = -4042.856628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.55229 -41.80097 -40.26361 -38.46514 -35.63560 -33.72088 -33.25620 -32.48800 -31.79562 -29.57753 -28.38722 -26.56456 -25.65395 -24.80956 -24.08303 -22.49537 -21.22751 -19.39538 -18.82592 -18.54643 -17.76073 -17.10075 -16.74130 -16.50577 -16.28557 -15.87002 -15.82816 -15.58831 -15.11475 -14.99613 -14.65820 -14.20727 -14.10988 -14.01183 -13.86757 -13.40815 -12.89497 -12.83549 -12.67386 -12.24263 -12.10970 -11.96511 -11.45914 -11.34617 -11.31086 -11.09086 -11.05296 -11.00635 -10.64131 -10.23658 -9.91447 -9.90123 -9.56915 -9.05309 -8.91069 -8.76265 -8.55283 -6.98352 -6.33774 -4.06275 0.37604 0.51466 2.61523 2.69670 2.80785 2.99262 3.10487 3.22934 3.29329 3.46401 3.52500 3.65342 4.08084 4.28311 4.40534 4.43961 4.52476 4.64759 4.68850 4.72287 4.79653 4.86343 5.03728 5.05700 5.07969 5.14199 5.25242 5.33553 5.41279 5.54487 5.63243 5.67862 5.73169 5.81553 5.89113 5.94989 6.14614 6.43933 6.53135 6.66351 7.30550 7.55186 7.89024 8.31332 8.35899 9.12374 10.75371 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.003057 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.739953 B = 9156.746176 C =10524.048913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.527 3.473 12 O -0.514 6.514 13 N -0.617 5.617 14 C 0.111 3.889 15 C -0.131 4.131 16 C 0.066 3.934 17 N -0.483 5.483 18 C 0.394 3.606 19 C -0.271 4.271 20 C 0.374 3.626 21 F -0.099 7.099 22 N -0.574 5.574 23 C 0.362 3.638 24 N -0.563 5.563 25 C 0.044 3.956 26 C 0.115 3.885 27 H 0.271 0.729 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.161 0.839 37 H 0.209 0.791 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.752 -19.460 5.065 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.315 3.685 12 O -0.388 6.388 13 N -0.353 5.353 14 C -0.011 4.011 15 C -0.170 4.170 16 C -0.059 4.059 17 N -0.198 5.198 18 C 0.155 3.845 19 C -0.298 4.298 20 C 0.215 3.785 21 F -0.078 7.078 22 N -0.298 5.298 23 C 0.073 3.927 24 N -0.285 5.285 25 C -0.084 4.084 26 C -0.010 4.010 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.179 0.821 37 H 0.225 0.775 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.288 -18.014 5.432 24.244 hybrid contribution -1.760 -0.457 -0.276 1.839 sum 13.528 -18.472 5.156 23.469 Atomic orbital electron populations 1.69934 1.05913 1.27826 1.47888 1.24706 0.94441 0.98959 0.93116 0.86744 0.81890 0.83310 0.79972 1.19163 1.19899 1.15950 1.22289 0.88156 0.97517 1.59011 0.89409 1.84831 1.09409 0.99913 1.97396 1.23365 0.94085 1.04487 1.05440 1.20430 0.90707 0.82198 0.75185 1.90694 1.58680 1.41856 1.47565 1.47831 1.06356 1.05799 1.75268 1.21839 0.79919 0.99945 0.99376 1.21903 0.99958 0.99500 0.95597 1.21765 0.88992 0.96002 0.99161 1.55442 1.08903 1.37580 1.17883 1.19805 0.87098 0.89423 0.88219 1.22038 1.04895 1.03400 0.99471 1.18113 0.85024 0.85732 0.89670 1.91685 1.57597 1.61862 1.96643 1.67877 1.11218 1.18479 1.32183 1.24692 0.87861 0.84864 0.95245 1.68451 1.32278 1.29070 0.98708 1.22186 0.90487 0.99024 0.96656 1.21647 0.94347 0.90607 0.94415 0.91890 0.88414 0.88779 0.91745 0.89020 0.90314 0.89612 0.91922 0.87977 0.82109 0.77491 0.88317 0.92672 0.89107 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.14 13.97 55.49 0.78 -25.37 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.49 27.74 -169.99 -4.72 16.77 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 7 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.26 4.64 36.00 0.17 -2.10 16 11 C 0.53 8.86 7.65 -10.98 -0.08 8.78 16 12 O -0.51 -10.58 15.16 5.56 0.08 -10.50 16 13 N -0.62 -7.38 2.18 -172.48 -0.38 -7.75 16 14 C 0.11 1.12 6.15 -3.01 -0.02 1.11 16 15 C -0.13 -1.01 5.79 -27.16 -0.16 -1.17 16 16 C 0.07 0.62 4.95 -5.05 -0.02 0.59 16 17 N -0.48 -4.32 3.87 -177.64 -0.69 -5.01 16 18 C 0.39 3.81 6.34 -154.77 -0.98 2.83 16 19 C -0.27 -2.39 9.16 -39.04 -0.36 -2.75 16 20 C 0.37 3.78 8.50 -17.05 -0.14 3.64 16 21 F -0.10 -1.01 17.30 2.25 0.04 -0.97 16 22 N -0.57 -6.03 10.45 -14.98 -0.16 -6.19 16 23 C 0.36 3.20 12.28 -92.21 -1.13 2.06 16 24 N -0.56 -5.60 8.34 -13.84 -0.12 -5.72 16 25 C 0.04 0.40 5.17 -5.76 -0.03 0.37 16 26 C 0.11 1.03 5.29 -4.00 -0.02 1.00 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.10 1.65 7.31 -51.92 -0.38 1.27 16 29 H 0.09 1.61 7.22 -51.92 -0.37 1.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.11 6.99 -51.93 -0.36 0.74 16 32 H 0.08 0.57 7.98 -51.93 -0.41 0.15 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.74 7.32 -51.93 -0.38 0.36 16 35 H 0.10 0.96 6.54 -51.93 -0.34 0.62 16 36 H 0.16 1.06 7.20 -52.49 -0.38 0.69 16 37 H 0.21 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.10 0.69 6.44 -51.93 -0.33 0.36 16 39 H 0.06 0.63 7.34 -51.93 -0.38 0.25 16 40 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.10 0.87 6.23 -51.93 -0.32 0.54 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -34.19 349.35 -9.39 -43.57 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.94 Total: -1.29 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.57 Total: 2.68 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.56 Total: -50.04 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.72 Total: 16.77 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.19 -9.39 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095164296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.874 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds