Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99735 * 2 1 4 4 H 1.48499 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47181 * 299.99920 * 3 2 1 6 6 H 1.48505 * 109.47199 * 59.99721 * 3 2 1 7 7 C 1.38798 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00065 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00088 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47113 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00058 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.46925 * 120.62980 * 180.02562 * 13 11 10 15 15 C 1.53187 * 108.77688 * 126.41364 * 14 13 11 16 16 C 1.53046 * 109.31043 * 54.63722 * 15 14 13 17 17 N 1.46499 * 109.46105 * 178.62937 * 16 15 14 18 18 C 1.39155 * 120.00206 * 205.02966 * 17 16 15 19 19 C 1.39211 * 120.05824 * 359.71693 * 18 17 16 20 20 N 1.32009 * 119.92879 * 179.71336 * 19 18 17 21 21 C 1.32405 * 120.05548 * 0.56921 * 20 19 18 22 22 F 1.35100 * 119.93687 * 179.73238 * 21 20 19 23 23 C 1.38464 * 120.12057 * 359.70799 * 21 20 19 24 24 N 1.32213 * 120.07418 * 359.97438 * 23 21 20 25 25 C 1.53043 * 109.53475 * 298.63386 * 16 15 14 26 26 C 1.46921 * 120.63225 * 0.02846 * 13 11 10 27 27 H 0.96995 * 120.00034 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47112 * 59.99966 * 10 9 7 29 29 H 1.08999 * 109.47378 * 300.00015 * 10 9 7 30 30 H 1.09003 * 109.59222 * 6.62634 * 14 13 11 31 31 H 1.09006 * 109.70276 * 246.27263 * 14 13 11 32 32 H 1.08996 * 109.50293 * 294.68191 * 15 14 13 33 33 H 1.09003 * 109.52666 * 174.59627 * 15 14 13 34 34 H 1.09002 * 109.46068 * 58.65418 * 16 15 14 35 35 H 0.97005 * 120.00365 * 25.02235 * 17 16 15 36 36 H 1.07994 * 120.03477 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.96541 * 179.97438 * 23 21 20 38 38 H 1.09004 * 109.49679 * 181.31796 * 25 16 15 39 39 H 1.08994 * 109.49744 * 301.41312 * 25 16 15 40 40 H 1.09002 * 109.58756 * 353.36576 * 26 13 11 41 41 H 1.09002 * 109.59282 * 113.79441 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9876 -5.3026 0.0012 12 8 0.7914 -5.5023 0.0011 13 7 2.8445 -6.3430 0.0008 14 6 2.3444 -7.7245 0.0008 15 6 2.9858 -8.4811 -1.1667 16 6 4.5087 -8.3638 -1.0702 17 7 5.1264 -9.1136 -2.1667 18 6 6.4230 -9.6007 -2.0328 19 6 7.1365 -9.3711 -0.8597 20 7 8.3643 -9.8392 -0.7332 21 6 8.9212 -10.5166 -1.7252 22 9 10.1799 -10.9899 -1.5953 23 6 8.2157 -10.7413 -2.8953 24 7 6.9834 -10.2802 -3.0248 25 6 4.9157 -6.8917 -1.1667 26 6 4.2962 -6.1172 0.0003 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7312 0.8905 29 1 3.1247 -3.7312 -0.8894 30 1 1.2608 -7.7211 -0.1173 31 1 2.6080 -8.2107 0.9402 32 1 2.6468 -8.0510 -2.1091 33 1 2.6983 -9.5316 -1.1219 34 1 4.8446 -8.7717 -0.1168 35 1 4.6316 -9.2707 -2.9861 36 1 6.6841 -8.8150 -0.0520 37 1 8.6725 -11.2939 -3.7030 38 1 6.0018 -6.8108 -1.1214 39 1 4.5585 -6.4765 -2.1090 40 1 4.5005 -5.0531 -0.1182 41 1 4.7214 -6.4705 0.9398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095214840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -17.626729 kcal Electronic energy + Delta-G solvation = -26039.210187 eV Core-core repulsion = 21995.402704 eV Total energy + Delta-G solvation = -4043.807483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.29438 -41.54041 -40.13417 -38.09512 -35.80109 -34.64458 -32.47396 -32.43861 -31.50417 -29.80599 -28.76593 -25.82239 -25.56074 -24.95019 -23.69873 -23.21446 -21.39422 -19.50879 -18.72793 -18.37666 -17.96822 -17.73953 -16.86390 -16.64619 -15.83790 -15.74397 -15.50391 -15.40102 -14.97411 -14.84332 -14.49531 -14.36138 -14.14207 -13.99283 -13.95341 -13.45344 -13.07420 -12.81984 -12.52352 -12.26636 -12.14622 -12.01330 -11.90578 -11.64644 -11.52855 -11.10537 -11.07966 -11.05521 -10.79022 -10.58708 -9.84045 -9.74604 -9.46862 -9.11625 -8.72014 -8.33980 -8.27496 -6.55471 -6.26093 -3.97127 0.29140 0.62091 2.30882 2.80721 2.95258 3.06461 3.12387 3.18585 3.22208 3.27881 3.51375 3.74615 3.86755 4.14172 4.15839 4.27548 4.31143 4.55107 4.63064 4.65708 4.80318 4.90852 4.93166 5.05478 5.09314 5.17249 5.24675 5.40248 5.44377 5.52836 5.64658 5.72687 5.76474 5.80170 5.85706 6.04022 6.12562 6.48110 6.79887 6.80901 7.29074 7.40161 7.55654 8.30922 8.44188 9.19515 10.81334 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.002069 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.061340 B =13529.008676 C =14601.566769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.623 5.623 14 C 0.117 3.883 15 C -0.140 4.140 16 C 0.150 3.850 17 N -0.703 5.703 18 C 0.353 3.647 19 C 0.028 3.972 20 N -0.429 5.429 21 C 0.180 3.820 22 F -0.110 7.110 23 C 0.099 3.901 24 N -0.481 5.481 25 C -0.154 4.154 26 C 0.110 3.890 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.410 0.590 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.904 -22.274 -3.654 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.388 6.388 13 N -0.360 5.360 14 C -0.006 4.006 15 C -0.179 4.179 16 C 0.046 3.954 17 N -0.334 5.334 18 C 0.113 3.887 19 C -0.142 4.142 20 N -0.147 5.147 21 C 0.024 3.976 22 F -0.089 7.089 23 C -0.064 4.064 24 N -0.203 5.203 25 C -0.193 4.193 26 C -0.014 4.014 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.247 0.753 36 H 0.193 0.807 37 H 0.198 0.802 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.929 -22.392 -3.500 26.093 hybrid contribution 2.226 1.123 -0.347 2.518 sum 15.155 -21.269 -3.847 26.398 Atomic orbital electron populations 1.70024 1.05950 1.27397 1.46850 1.25000 0.95038 0.99067 0.94506 0.86116 0.79578 0.81860 0.77937 1.19606 1.20557 1.20537 1.22886 0.94897 0.91564 1.58955 0.90879 1.85419 1.04906 0.96432 1.96702 1.23560 1.06573 0.95341 1.04739 1.20357 0.86180 0.86212 0.74778 1.90700 1.15178 1.85182 1.47745 1.48141 1.06277 1.05730 1.75808 1.21438 1.01146 0.81144 0.96913 1.22202 0.92873 1.01760 1.01020 1.21181 0.93454 0.91148 0.89667 1.44707 1.10937 1.57705 1.20042 1.19411 0.87733 0.90827 0.90732 1.22987 0.89798 1.03418 0.97966 1.67588 1.11128 1.06553 1.29418 1.18784 0.83409 1.01846 0.93605 1.91625 1.35533 1.85637 1.96137 1.23289 0.89619 0.96984 0.96507 1.68042 1.10765 1.12522 1.28988 1.22485 1.01436 0.94763 1.00638 1.21678 0.80019 1.01938 0.97734 0.92203 0.89177 0.89248 0.88101 0.91347 0.90344 0.89819 0.89393 0.75285 0.80705 0.80232 0.90246 0.90289 0.88543 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.88 4.50 36.01 0.16 -2.72 16 11 C 0.54 9.30 7.72 -10.98 -0.08 9.22 16 12 O -0.51 -10.97 15.28 5.56 0.08 -10.89 16 13 N -0.62 -7.34 2.97 -172.80 -0.51 -7.85 16 14 C 0.12 1.08 6.43 -3.71 -0.02 1.06 16 15 C -0.14 -0.90 5.55 -26.61 -0.15 -1.05 16 16 C 0.15 0.86 2.11 -67.89 -0.14 0.71 16 17 N -0.70 -4.31 5.25 -53.76 -0.28 -4.59 16 18 C 0.35 2.74 7.65 -154.63 -1.18 1.56 16 19 C 0.03 0.22 10.00 -17.11 -0.17 0.05 16 20 N -0.43 -4.26 10.50 -13.24 -0.14 -4.39 16 21 C 0.18 1.65 8.43 -17.22 -0.15 1.50 16 22 F -0.11 -1.03 17.29 2.25 0.04 -0.99 16 23 C 0.10 0.73 11.20 -17.30 -0.19 0.54 16 24 N -0.48 -4.09 10.53 -12.17 -0.13 -4.22 16 25 C -0.15 -1.04 5.57 -26.63 -0.15 -1.19 16 26 C 0.11 0.94 6.34 -3.74 -0.02 0.91 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.09 1.58 7.94 -51.92 -0.41 1.17 16 29 H 0.09 1.57 7.69 -51.92 -0.40 1.17 16 30 H 0.10 1.15 7.01 -51.93 -0.36 0.79 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.41 6.48 -51.93 -0.34 0.07 16 35 H 0.41 2.37 8.73 -40.82 -0.36 2.01 16 36 H 0.18 0.98 6.10 -52.49 -0.32 0.66 16 37 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.08 0.48 7.68 -51.93 -0.40 0.08 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.90 5.93 -51.93 -0.31 0.59 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -34.90 359.41 -8.90 -43.80 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.98 Total: -1.48 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.90 Total: -2.00 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.33 Total: -46.03 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.90 -8.90 -43.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095214840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.175 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds