Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99722 * 2 1 4 4 H 1.48500 * 109.47225 * 240.00314 * 3 2 1 5 5 H 1.48502 * 109.47491 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47089 * 120.00059 * 3 2 1 7 7 C 1.38799 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99814 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00164 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47339 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00042 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00000 * 180.02562 * 11 10 9 14 14 C 1.46932 * 120.62874 * 179.97438 * 13 11 10 15 15 C 1.53187 * 108.77537 * 233.63069 * 14 13 11 16 16 C 1.53051 * 109.31138 * 305.36466 * 15 14 13 17 17 N 1.46495 * 109.45968 * 181.38382 * 16 15 14 18 18 C 1.39120 * 119.99599 * 154.99667 * 17 16 15 19 19 N 1.32565 * 120.11101 * 0.02562 * 18 17 16 20 20 C 1.32302 * 119.94306 * 179.97438 * 19 18 17 21 21 C 1.38065 * 120.16575 * 0.02562 * 20 19 18 22 22 N 1.32349 * 120.22405 * 0.02562 * 21 20 19 23 23 C 1.32068 * 120.04995 * 359.97438 * 22 21 20 24 24 F 1.35107 * 120.07998 * 179.97438 * 23 22 21 25 25 C 1.53041 * 109.53667 * 61.36472 * 16 15 14 26 26 C 1.46921 * 120.63296 * 0.02562 * 13 11 10 27 27 H 0.97000 * 119.99912 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47081 * 59.99480 * 10 9 7 29 29 H 1.09000 * 109.47171 * 299.99852 * 10 9 7 30 30 H 1.09000 * 109.58680 * 113.83711 * 14 13 11 31 31 H 1.09005 * 109.70350 * 353.48771 * 14 13 11 32 32 H 1.09000 * 109.49846 * 185.41681 * 15 14 13 33 33 H 1.09002 * 109.52621 * 65.32800 * 15 14 13 34 34 H 1.08995 * 109.45728 * 301.36096 * 16 15 14 35 35 H 0.96996 * 120.00517 * 335.00239 * 17 16 15 36 36 H 1.08002 * 119.91865 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.88650 * 179.72239 * 21 20 19 38 38 H 1.09000 * 109.49971 * 58.59022 * 25 16 15 39 39 H 1.08991 * 109.49558 * 178.68731 * 25 16 15 40 40 H 1.09000 * 109.58691 * 246.15881 * 26 13 11 41 41 H 1.09002 * 109.58492 * 6.58658 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9875 -5.3026 -0.0036 12 8 0.7913 -5.5023 -0.0029 13 7 2.8444 -6.3430 -0.0039 14 6 2.3443 -7.7246 -0.0039 15 6 2.9855 -8.4811 1.1637 16 6 4.5084 -8.3638 1.0674 17 7 5.1259 -9.1138 2.1640 18 6 6.4225 -9.6002 2.0303 19 7 7.1012 -9.3859 0.9120 20 6 8.3342 -9.8495 0.7887 21 6 8.9160 -10.5567 1.8219 22 7 8.2440 -10.7754 2.9409 23 6 7.0127 -10.3166 3.0733 24 9 6.3259 -10.5399 4.2152 25 6 4.9155 -6.8917 1.1639 26 6 4.2961 -6.1172 -0.0030 27 1 -0.4850 0.8401 0.0004 28 1 3.1246 -3.7320 0.8872 29 1 3.1245 -3.7305 -0.8928 30 1 2.6100 -8.2094 -0.9434 31 1 1.2605 -7.7232 0.1127 32 1 2.6979 -9.5315 1.1184 33 1 2.6464 -8.0513 2.1063 34 1 4.8444 -8.7715 0.1141 35 1 4.6309 -9.2713 2.9831 36 1 8.8867 -9.6750 -0.1228 37 1 9.9212 -10.9371 1.7147 38 1 4.5582 -6.4764 2.1062 39 1 6.0015 -6.8109 1.1187 40 1 4.7214 -6.4706 -0.9424 41 1 4.5003 -5.0531 0.1156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095215063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -19.031066 kcal Electronic energy + Delta-G solvation = -26272.866431 eV Core-core repulsion = 22228.998051 eV Total energy + Delta-G solvation = -4043.868380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.40934 -41.39679 -40.04658 -38.02367 -35.87887 -34.19757 -32.46254 -32.43672 -31.50007 -29.89694 -28.78957 -25.74431 -25.45626 -24.59654 -23.66627 -23.23622 -21.23833 -19.47533 -18.67124 -18.41957 -18.01142 -17.72475 -16.82433 -16.78330 -15.72310 -15.65319 -15.42016 -15.33918 -14.82156 -14.73356 -14.44941 -14.34429 -14.13864 -13.92385 -13.72837 -13.38208 -12.99777 -12.76004 -12.49994 -12.28946 -12.12140 -12.02315 -11.85283 -11.51166 -11.32625 -11.05834 -11.05403 -10.89193 -10.77674 -10.49046 -9.83176 -9.72077 -9.40428 -9.07688 -8.62705 -8.32696 -8.24998 -6.52413 -6.23201 -3.94164 0.31086 0.66488 2.37136 2.87845 2.99282 3.04866 3.15593 3.22107 3.24046 3.27714 3.55738 3.71270 3.79217 4.18467 4.31756 4.48384 4.55096 4.69874 4.74557 4.83498 4.91247 5.01046 5.05142 5.11847 5.18715 5.28341 5.41769 5.52856 5.55429 5.63810 5.70685 5.74288 5.84254 5.84565 5.98156 6.08616 6.40791 6.49322 6.57015 6.93469 7.35410 7.48729 7.57515 8.33128 8.50734 9.21923 10.84133 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002161 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.261662 B =12951.687043 C =13696.083727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.536 3.464 12 O -0.516 6.516 13 N -0.622 5.622 14 C 0.119 3.881 15 C -0.143 4.143 16 C 0.156 3.844 17 N -0.703 5.703 18 C 0.356 3.644 19 N -0.477 5.477 20 C 0.099 3.901 21 C 0.008 3.992 22 N -0.431 5.431 23 C 0.193 3.807 24 F -0.109 7.109 25 C -0.144 4.144 26 C 0.113 3.887 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.414 0.586 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.347 -22.528 1.751 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.390 6.390 13 N -0.359 5.359 14 C -0.005 4.005 15 C -0.182 4.182 16 C 0.052 3.948 17 N -0.334 5.334 18 C 0.114 3.886 19 N -0.201 5.201 20 C -0.061 4.061 21 C -0.152 4.152 22 N -0.150 5.150 23 C 0.028 3.972 24 F -0.088 7.088 25 C -0.184 4.184 26 C -0.011 4.011 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.196 0.804 37 H 0.193 0.807 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.262 -22.608 1.627 27.325 hybrid contribution 1.917 1.113 0.675 2.317 sum 17.179 -21.494 2.303 27.612 Atomic orbital electron populations 1.70007 1.05947 1.27583 1.46719 1.24991 0.95033 0.99021 0.94520 0.86227 0.79245 0.81248 0.78801 1.19917 1.20800 1.19952 1.22811 0.94835 0.91627 1.59124 0.91000 1.85402 1.04957 0.96352 1.96707 1.23556 1.06507 0.95384 1.04709 1.20342 0.86182 0.86217 0.74828 1.90692 1.15185 1.85216 1.47922 1.48150 1.06382 1.05704 1.75641 1.21411 1.00927 0.81163 0.96955 1.22242 0.93684 1.01484 1.00792 1.21043 0.92206 0.91159 0.90401 1.44808 1.10671 1.57783 1.20167 1.19111 0.88249 0.91487 0.89794 1.68138 1.08583 1.22690 1.20642 1.23587 0.90217 0.92331 0.99981 1.23199 1.01567 1.01610 0.88850 1.67593 1.04980 1.17013 1.25433 1.18418 0.90473 1.03721 0.84633 1.91620 1.76745 1.93160 1.47298 1.22337 1.01448 0.94835 0.99784 1.21652 0.79808 1.01621 0.98028 0.92113 0.89295 0.89209 0.91468 0.88243 0.90107 0.90639 0.88714 0.74789 0.80427 0.80723 0.91103 0.90273 0.91076 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.00 4.50 36.00 0.16 -2.83 16 11 C 0.54 9.84 7.72 -10.99 -0.08 9.75 16 12 O -0.52 -11.46 15.28 5.56 0.08 -11.37 16 13 N -0.62 -8.20 2.97 -172.80 -0.51 -8.71 16 14 C 0.12 1.28 6.43 -3.71 -0.02 1.25 16 15 C -0.14 -1.17 5.55 -26.61 -0.15 -1.31 16 16 C 0.16 1.24 2.44 -67.89 -0.17 1.08 16 17 N -0.70 -5.43 5.23 -53.68 -0.28 -5.72 16 18 C 0.36 3.14 7.48 -154.58 -1.16 1.98 16 19 N -0.48 -3.92 9.38 -12.17 -0.11 -4.04 16 20 C 0.10 0.56 11.21 -17.41 -0.20 0.37 16 21 C 0.01 0.05 11.21 -17.39 -0.19 -0.15 16 22 N -0.43 -4.11 10.50 -13.23 -0.14 -4.25 16 23 C 0.19 1.88 8.47 -16.94 -0.14 1.73 16 24 F -0.11 -1.08 16.68 2.25 0.04 -1.05 16 25 C -0.14 -1.29 5.66 -26.64 -0.15 -1.44 16 26 C 0.11 1.16 6.34 -3.74 -0.02 1.13 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.64 7.69 -51.91 -0.40 1.24 16 29 H 0.09 1.65 7.94 -51.92 -0.41 1.23 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.26 7.01 -51.93 -0.36 0.89 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.79 7.56 -51.93 -0.39 0.40 16 35 H 0.41 2.79 8.09 -40.82 -0.33 2.46 16 36 H 0.18 0.38 8.06 -52.49 -0.42 -0.05 16 37 H 0.18 0.48 8.06 -52.48 -0.42 0.06 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.00 5.93 -51.93 -0.31 0.70 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -35.44 362.00 -9.03 -44.47 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.13 Total: -0.65 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.93 Total: -1.25 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.31 Total: -47.98 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.44 -9.03 -44.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095215063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.439 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds