Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99722 * 2 1 4 4 H 1.48500 * 109.47225 * 240.00314 * 3 2 1 5 5 H 1.48502 * 109.47491 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47089 * 120.00059 * 3 2 1 7 7 C 1.38799 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99814 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00164 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47339 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00042 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00000 * 180.02562 * 11 10 9 14 14 C 1.46932 * 120.62874 * 179.97438 * 13 11 10 15 15 C 1.53187 * 108.77537 * 233.63069 * 14 13 11 16 16 C 1.53051 * 109.31138 * 305.36466 * 15 14 13 17 17 N 1.46495 * 109.45968 * 181.38382 * 16 15 14 18 18 C 1.39120 * 119.99599 * 154.99667 * 17 16 15 19 19 N 1.32565 * 120.11101 * 0.02562 * 18 17 16 20 20 C 1.32302 * 119.94306 * 179.97438 * 19 18 17 21 21 C 1.38065 * 120.16575 * 0.02562 * 20 19 18 22 22 N 1.32349 * 120.22405 * 0.02562 * 21 20 19 23 23 C 1.32068 * 120.04995 * 359.97438 * 22 21 20 24 24 F 1.35107 * 120.07998 * 179.97438 * 23 22 21 25 25 C 1.53041 * 109.53667 * 61.36472 * 16 15 14 26 26 C 1.46921 * 120.63296 * 0.02562 * 13 11 10 27 27 H 0.97000 * 119.99912 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47081 * 59.99480 * 10 9 7 29 29 H 1.09000 * 109.47171 * 299.99852 * 10 9 7 30 30 H 1.09000 * 109.58680 * 113.83711 * 14 13 11 31 31 H 1.09005 * 109.70350 * 353.48771 * 14 13 11 32 32 H 1.09000 * 109.49846 * 185.41681 * 15 14 13 33 33 H 1.09002 * 109.52621 * 65.32800 * 15 14 13 34 34 H 1.08995 * 109.45728 * 301.36096 * 16 15 14 35 35 H 0.96996 * 120.00517 * 335.00239 * 17 16 15 36 36 H 1.08002 * 119.91865 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.88650 * 179.72239 * 21 20 19 38 38 H 1.09000 * 109.49971 * 58.59022 * 25 16 15 39 39 H 1.08991 * 109.49558 * 178.68731 * 25 16 15 40 40 H 1.09000 * 109.58691 * 246.15881 * 26 13 11 41 41 H 1.09002 * 109.58492 * 6.58658 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9875 -5.3026 -0.0036 12 8 0.7913 -5.5023 -0.0029 13 7 2.8444 -6.3430 -0.0039 14 6 2.3443 -7.7246 -0.0039 15 6 2.9855 -8.4811 1.1637 16 6 4.5084 -8.3638 1.0674 17 7 5.1259 -9.1138 2.1640 18 6 6.4225 -9.6002 2.0303 19 7 7.1012 -9.3859 0.9120 20 6 8.3342 -9.8495 0.7887 21 6 8.9160 -10.5567 1.8219 22 7 8.2440 -10.7754 2.9409 23 6 7.0127 -10.3166 3.0733 24 9 6.3259 -10.5399 4.2152 25 6 4.9155 -6.8917 1.1639 26 6 4.2961 -6.1172 -0.0030 27 1 -0.4850 0.8401 0.0004 28 1 3.1246 -3.7320 0.8872 29 1 3.1245 -3.7305 -0.8928 30 1 2.6100 -8.2094 -0.9434 31 1 1.2605 -7.7232 0.1127 32 1 2.6979 -9.5315 1.1184 33 1 2.6464 -8.0513 2.1063 34 1 4.8444 -8.7715 0.1141 35 1 4.6309 -9.2713 2.9831 36 1 8.8867 -9.6750 -0.1228 37 1 9.9212 -10.9371 1.7147 38 1 4.5582 -6.4764 2.1062 39 1 6.0015 -6.8109 1.1187 40 1 4.7214 -6.4706 -0.9424 41 1 4.5003 -5.0531 0.1156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095215063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -43.795835 kcal Electronic energy + Delta-G solvation = -26273.940312 eV Core-core repulsion = 22228.998051 eV Total energy + Delta-G solvation = -4044.942261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.06405 -41.96150 -41.17209 -39.03076 -36.76911 -34.84592 -34.58498 -33.34372 -32.34884 -30.82559 -29.90512 -27.68084 -26.40845 -25.23409 -24.45241 -24.01044 -22.11325 -20.57048 -19.69908 -19.26908 -19.02724 -18.59153 -18.15335 -17.43147 -16.94733 -16.86799 -16.65932 -16.32525 -15.93314 -15.85811 -15.37817 -15.17066 -15.01953 -14.93011 -14.54715 -14.45103 -14.37167 -14.02938 -13.51561 -13.38845 -13.17054 -13.00087 -12.86733 -12.82070 -12.66838 -12.61989 -12.28217 -12.01674 -11.74217 -11.63001 -11.14340 -11.12981 -10.85130 -10.28271 -10.26427 -9.74000 -8.89494 -8.67412 -8.34513 -6.12896 -0.22652 0.11329 1.25413 1.43754 1.45659 1.54667 1.55323 1.81480 2.09183 2.27544 2.46866 2.62918 2.99492 3.22531 3.25321 3.26264 3.56493 3.74588 3.80601 4.01856 4.02698 4.12773 4.25061 4.27810 4.28595 4.40059 4.44889 4.56068 4.58908 4.71175 4.80236 4.82510 4.93150 5.02433 5.15079 5.31707 5.41339 5.55678 5.84936 5.93456 6.19336 6.25581 6.39714 6.80653 7.06558 7.13320 8.74401 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002161 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.261662 B =12951.687043 C =13696.083727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.607 5.607 14 C 0.115 3.885 15 C -0.132 4.132 16 C 0.166 3.834 17 N -0.702 5.702 18 C 0.350 3.650 19 N -0.489 5.489 20 C 0.110 3.890 21 C 0.013 3.987 22 N -0.460 5.460 23 C 0.163 3.837 24 F -0.120 7.120 25 C -0.136 4.136 26 C 0.108 3.892 27 H 0.271 0.729 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.417 0.583 36 H 0.219 0.781 37 H 0.210 0.790 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.879 -23.204 0.767 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.276 4.276 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.342 5.342 14 C -0.008 4.008 15 C -0.171 4.171 16 C 0.061 3.939 17 N -0.334 5.334 18 C 0.108 3.892 19 N -0.213 5.213 20 C -0.051 4.051 21 C -0.148 4.148 22 N -0.179 5.179 23 C 0.000 4.000 24 F -0.100 7.100 25 C -0.175 4.175 26 C -0.015 4.015 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.255 0.745 36 H 0.235 0.765 37 H 0.226 0.774 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.821 -23.328 0.668 29.982 hybrid contribution 1.004 1.147 0.918 1.780 sum 19.826 -22.181 1.586 29.792 Atomic orbital electron populations 1.70178 1.07969 1.28661 1.47939 1.26130 0.95970 1.03319 0.93753 0.85013 0.77817 0.75710 0.79520 1.18537 1.20447 1.18716 1.23154 0.95308 0.91935 1.58944 0.89911 1.85580 1.10631 0.99274 1.97025 1.23376 1.03367 0.94526 1.06283 1.20091 0.85978 0.86642 0.75086 1.90677 1.17213 1.85758 1.50730 1.48132 1.07201 1.05563 1.73262 1.21615 0.99957 0.79891 0.99313 1.22131 0.93774 1.02136 0.99048 1.20902 0.91700 0.90514 0.90745 1.44721 1.10615 1.57804 1.20222 1.19102 0.88494 0.91691 0.89902 1.68211 1.09669 1.23129 1.20254 1.24294 0.89358 0.90445 1.01021 1.23875 1.02571 1.00564 0.87811 1.67599 1.05272 1.17819 1.27186 1.18537 0.91058 1.05514 0.84940 1.91577 1.77059 1.93437 1.47933 1.22248 1.01593 0.95222 0.98461 1.21914 0.77711 1.01926 0.99922 0.92003 0.87701 0.87344 0.88987 0.90466 0.88029 0.91618 0.88180 0.74484 0.76456 0.77366 0.92343 0.89551 0.88509 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.55 -30.99 9.50 67.95 0.65 -30.34 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.12 -4.92 4.50 71.23 0.32 -4.59 16 11 C 0.53 19.67 7.72 87.65 0.68 20.35 16 12 O -0.57 -26.00 15.28 -3.02 -0.05 -26.05 16 13 N -0.61 -15.23 2.97 -819.02 -2.43 -17.66 16 14 C 0.11 2.31 6.43 86.36 0.56 2.86 16 15 C -0.13 -1.93 5.55 30.67 0.17 -1.76 16 16 C 0.17 2.26 2.44 45.02 0.11 2.37 16 17 N -0.70 -9.83 5.23 -323.76 -1.69 -11.52 16 18 C 0.35 5.60 7.48 133.09 0.99 6.59 16 19 N -0.49 -6.63 9.38 -192.42 -1.80 -8.44 16 20 C 0.11 0.84 11.21 84.58 0.95 1.79 16 21 C 0.01 0.12 11.21 84.57 0.95 1.07 16 22 N -0.46 -8.14 10.50 -195.79 -2.06 -10.19 16 23 C 0.16 3.06 8.47 84.99 0.72 3.78 16 24 F -0.12 -2.45 16.68 44.97 0.75 -1.70 16 25 C -0.14 -2.11 5.66 30.65 0.17 -1.94 16 26 C 0.11 1.94 6.34 86.34 0.55 2.48 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.10 3.78 7.69 -2.39 -0.02 3.76 16 29 H 0.11 3.85 7.94 -2.40 -0.02 3.83 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.96 7.01 -2.38 -0.02 1.94 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.33 7.56 -2.39 -0.02 1.32 16 35 H 0.42 5.32 8.09 -92.71 -0.75 4.57 16 36 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.21 0.32 8.06 -2.91 -0.02 0.29 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.71 5.93 -2.39 -0.01 1.69 16 Total: -1.00 -80.82 362.00 1.47 -79.35 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.33 Total: 12.23 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 7.28 Total: 3.87 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -7.70 Total: -103.44 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.75 Total: -1.70 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -80.82 1.47 -79.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095215063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.556 kcal (2) G-P(sol) polarization free energy of solvation -80.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds