Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 120.00200 * 2 1 4 4 H 1.48504 * 109.46930 * 269.99858 * 3 2 1 5 5 H 1.48498 * 109.47012 * 29.99699 * 3 2 1 6 6 H 1.48497 * 109.47119 * 149.99815 * 3 2 1 7 7 C 1.38798 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99906 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00287 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47283 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99828 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00109 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.63120 * 179.97438 * 13 11 10 15 15 C 1.53196 * 108.77482 * 233.62714 * 14 13 11 16 16 C 1.53034 * 109.31251 * 305.36511 * 15 14 13 17 17 N 1.46507 * 109.45745 * 181.38311 * 16 15 14 18 18 C 1.38574 * 119.99854 * 155.00113 * 17 16 15 19 19 C 1.39465 * 120.51526 * 0.02562 * 18 17 16 20 20 C 1.38474 * 118.31403 * 179.97438 * 19 18 17 21 21 F 1.35099 * 120.43105 * 179.97438 * 20 19 18 22 22 N 1.32789 * 119.13326 * 359.97438 * 20 19 18 23 23 C 1.31755 * 120.96726 * 0.02562 * 22 20 19 24 24 N 1.31766 * 121.85997 * 359.97438 * 23 22 20 25 25 C 1.53040 * 109.54014 * 61.36640 * 16 15 14 26 26 C 1.46925 * 120.63136 * 0.02562 * 13 11 10 27 27 H 0.97007 * 119.99443 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47112 * 59.99902 * 10 9 7 29 29 H 1.09000 * 109.46799 * 299.99675 * 10 9 7 30 30 H 1.09005 * 109.58675 * 113.84049 * 14 13 11 31 31 H 1.08994 * 109.70554 * 353.49044 * 14 13 11 32 32 H 1.08996 * 109.49606 * 185.41401 * 15 14 13 33 33 H 1.09000 * 109.52278 * 65.33760 * 15 14 13 34 34 H 1.08998 * 109.46187 * 301.35733 * 16 15 14 35 35 H 0.96996 * 119.99755 * 335.00156 * 17 16 15 36 36 H 1.08005 * 120.84435 * 359.70271 * 19 18 17 37 37 H 1.08002 * 119.07164 * 179.97438 * 23 22 20 38 38 H 1.09003 * 109.49603 * 58.58108 * 25 16 15 39 39 H 1.09000 * 109.50008 * 178.67736 * 25 16 15 40 40 H 1.08999 * 109.58648 * 246.16237 * 26 13 11 41 41 H 1.09009 * 109.58520 * 6.43676 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 2.3438 -7.7247 0.0030 15 6 2.9850 -8.4802 1.1713 16 6 4.5078 -8.3631 1.0749 17 7 5.1254 -9.1122 2.1722 18 6 6.4168 -9.5968 2.0396 19 6 7.1386 -9.3773 0.8666 20 6 8.4256 -9.8815 0.7834 21 9 9.1630 -9.6943 -0.3330 22 7 8.9255 -10.5513 1.8152 23 6 8.2155 -10.7405 2.9089 24 7 6.9877 -10.2779 3.0297 25 6 4.9151 -6.8909 1.1701 26 6 4.2957 -6.1175 0.0024 27 1 -0.4850 0.8402 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8895 30 1 2.6095 -8.2103 -0.9360 31 1 1.2601 -7.7231 0.1196 32 1 2.6974 -9.5306 1.1269 33 1 2.6459 -8.0496 2.1135 34 1 4.8439 -8.7717 0.1219 35 1 4.6302 -9.2689 2.9914 36 1 6.7033 -8.8318 0.0424 37 1 8.6523 -11.2901 3.7296 38 1 4.5577 -6.4748 2.1120 39 1 6.0011 -6.8102 1.1249 40 1 4.7210 -6.4716 -0.9366 41 1 4.5000 -5.0529 0.1175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095215070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -20.874201 kcal Electronic energy + Delta-G solvation = -26176.539224 eV Core-core repulsion = 22132.590920 eV Total energy + Delta-G solvation = -4043.948304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.54119 -41.37880 -40.14817 -38.18306 -35.95366 -33.57836 -32.47516 -32.42271 -31.56890 -30.59851 -28.94127 -25.71534 -25.46839 -24.66139 -23.73198 -23.19176 -21.39530 -19.55808 -18.91804 -18.62874 -17.78679 -16.94137 -16.68117 -16.40765 -16.08286 -15.75883 -15.71459 -15.46708 -15.05112 -14.86628 -14.84386 -14.40954 -14.24484 -13.98441 -13.98161 -13.48601 -13.08922 -12.84683 -12.55222 -12.37414 -12.10647 -11.92877 -11.63885 -11.24079 -11.12063 -11.09616 -11.06866 -11.05987 -10.79702 -10.26315 -9.91450 -9.85570 -9.48002 -9.11156 -8.80428 -8.71755 -8.28862 -6.55982 -6.26264 -3.97474 0.41315 0.75700 2.30486 2.79750 2.93820 2.97536 3.19095 3.21628 3.26836 3.28756 3.50527 3.74121 4.06370 4.15359 4.17334 4.28521 4.47473 4.62026 4.65349 4.72835 4.80324 4.91357 5.04218 5.08595 5.09115 5.16365 5.24289 5.39184 5.43543 5.51906 5.63062 5.71341 5.75170 5.79678 5.86053 6.03220 6.09433 6.46826 6.58404 6.93691 7.39132 7.54947 7.64787 8.30338 8.43212 9.19169 10.81093 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002169 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.189589 B =12908.825619 C =13833.584488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.623 5.623 14 C 0.118 3.882 15 C -0.140 4.140 16 C 0.149 3.851 17 N -0.696 5.696 18 C 0.466 3.534 19 C -0.320 4.320 20 C 0.385 3.615 21 F -0.102 7.102 22 N -0.595 5.595 23 C 0.377 3.623 24 N -0.585 5.585 25 C -0.152 4.152 26 C 0.111 3.889 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.413 0.587 36 H 0.155 0.845 37 H 0.207 0.793 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.742 -21.948 3.099 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.388 6.388 13 N -0.360 5.360 14 C -0.006 4.006 15 C -0.179 4.179 16 C 0.044 3.956 17 N -0.326 5.326 18 C 0.221 3.779 19 C -0.350 4.350 20 C 0.227 3.773 21 F -0.080 7.080 22 N -0.321 5.321 23 C 0.088 3.912 24 N -0.310 5.310 25 C -0.192 4.192 26 C -0.013 4.013 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.173 0.827 37 H 0.224 0.776 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.080 -22.475 3.585 26.250 hybrid contribution 1.785 1.698 -0.547 2.524 sum 14.866 -20.777 3.038 25.728 Atomic orbital electron populations 1.70018 1.05955 1.27503 1.46740 1.24996 0.95037 0.99053 0.94486 0.86167 0.79408 0.81542 0.78386 1.20235 1.20728 1.19690 1.22844 0.94860 0.91579 1.59106 0.90938 1.85417 1.04877 0.96403 1.96710 1.23562 1.06589 0.95340 1.04727 1.20359 0.86183 0.86210 0.74777 1.90701 1.15161 1.85186 1.47735 1.48143 1.06268 1.05736 1.75815 1.21435 1.01152 0.81146 0.96871 1.22208 0.92859 1.01787 1.01055 1.21203 0.93374 0.91243 0.89781 1.44748 1.11146 1.56737 1.20002 1.18288 0.85987 0.85854 0.87748 1.21843 0.96283 1.14460 1.02386 1.18012 0.86219 0.90439 0.82636 1.91670 1.77004 1.92045 1.47322 1.67857 1.40241 1.21809 1.02164 1.24545 0.84419 0.89857 0.92423 1.68037 1.14234 1.17681 1.31086 1.22455 1.01483 0.94645 1.00593 1.21665 0.80020 1.01929 0.97701 0.92145 0.89256 0.89185 0.91401 0.88049 0.89816 0.90310 0.89305 0.75015 0.82736 0.77644 0.90318 0.90217 0.91121 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.89 9.50 30.94 0.29 -14.59 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.90 4.50 36.01 0.16 -2.74 16 11 C 0.54 9.37 7.72 -10.99 -0.08 9.28 16 12 O -0.51 -11.01 15.28 5.55 0.08 -10.93 16 13 N -0.62 -7.47 2.97 -172.80 -0.51 -7.98 16 14 C 0.12 1.11 6.43 -3.71 -0.02 1.09 16 15 C -0.14 -0.94 5.55 -26.61 -0.15 -1.09 16 16 C 0.15 0.91 2.12 -67.89 -0.14 0.76 16 17 N -0.70 -4.47 5.23 -53.76 -0.28 -4.75 16 18 C 0.47 3.74 7.69 -154.76 -1.19 2.55 16 19 C -0.32 -2.50 8.91 -39.04 -0.35 -2.85 16 20 C 0.38 3.59 8.50 -17.05 -0.14 3.45 16 21 F -0.10 -0.97 17.30 2.25 0.04 -0.94 16 22 N -0.60 -5.71 10.45 -14.98 -0.16 -5.87 16 23 C 0.38 2.89 12.28 -92.21 -1.13 1.76 16 24 N -0.59 -5.00 10.47 -13.84 -0.14 -5.14 16 25 C -0.15 -1.09 5.62 -26.64 -0.15 -1.24 16 26 C 0.11 0.97 6.34 -3.74 -0.02 0.95 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.58 7.69 -51.92 -0.40 1.18 16 29 H 0.09 1.59 7.94 -51.92 -0.41 1.17 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.17 7.01 -51.93 -0.36 0.81 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.48 6.51 -51.93 -0.34 0.14 16 35 H 0.41 2.43 8.73 -40.82 -0.36 2.08 16 36 H 0.16 0.94 6.34 -52.48 -0.33 0.61 16 37 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.52 7.79 -51.93 -0.40 0.12 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.92 5.93 -51.92 -0.31 0.61 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -34.73 359.83 -10.08 -44.81 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.00 Total: -1.12 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.03 Total: -0.70 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.36 Total: -48.74 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.73 -10.08 -44.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095215070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.936 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds