Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 120.00434 * 2 1 4 4 H 1.48496 * 109.47174 * 240.00519 * 3 2 1 5 5 H 1.48502 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47090 * 120.00111 * 3 2 1 7 7 C 1.38805 * 119.99365 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99595 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00033 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47103 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00045 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.46932 * 120.62601 * 0.02562 * 13 11 10 15 15 C 1.53195 * 108.77159 * 233.60477 * 14 13 11 16 16 C 1.53043 * 109.31302 * 305.36601 * 15 14 13 17 17 C 1.53045 * 109.53648 * 61.36607 * 16 15 14 18 18 H 1.09001 * 109.49590 * 58.61744 * 17 16 15 19 19 N 1.46500 * 109.49255 * 178.67995 * 17 16 15 20 20 C 1.39121 * 119.99657 * 204.93157 * 19 17 16 21 21 N 1.32568 * 120.11104 * 0.02562 * 20 19 17 22 22 C 1.32307 * 119.94201 * 180.02562 * 21 20 19 23 23 C 1.38062 * 120.16738 * 359.97438 * 22 21 20 24 24 N 1.32344 * 120.21891 * 0.28178 * 23 22 21 25 25 C 1.32073 * 120.05728 * 359.48593 * 24 23 22 26 26 F 1.35104 * 120.08241 * 180.26028 * 25 24 23 27 27 C 1.46929 * 120.60669 * 180.02562 * 13 11 10 28 28 H 0.96998 * 119.99461 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46734 * 60.00174 * 10 9 7 30 30 H 1.08996 * 109.46587 * 300.00069 * 10 9 7 31 31 H 1.09000 * 109.58802 * 113.82208 * 14 13 11 32 32 H 1.08995 * 109.70491 * 353.45978 * 14 13 11 33 33 H 1.08998 * 109.49637 * 185.41563 * 15 14 13 34 34 H 1.09004 * 109.49466 * 65.31918 * 15 14 13 35 35 H 1.08994 * 109.46030 * 301.34094 * 16 15 14 36 36 H 1.09002 * 109.44509 * 181.37568 * 16 15 14 37 37 H 0.96998 * 120.00546 * 24.93720 * 19 17 16 38 38 H 1.07999 * 119.91534 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.88548 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.61547 * 6.61808 * 27 13 11 41 41 H 1.08999 * 109.56362 * 246.19516 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2855 2.7464 0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8916 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0021 13 7 2.8437 -6.3433 -0.0018 14 6 4.2956 -6.1175 -0.0013 15 6 4.9152 -6.8912 -1.1693 16 6 4.5080 -8.3634 -1.0740 17 6 2.9851 -8.4804 -1.1709 18 1 2.6463 -8.0500 -2.1132 19 7 2.5985 -9.8923 -1.1112 20 6 1.3983 -10.3093 -1.6777 21 7 0.6030 -9.4311 -2.2725 22 6 -0.5379 -9.8313 -2.8097 23 6 -0.9025 -11.1617 -2.7531 24 7 -0.1160 -12.0431 -2.1564 25 6 1.0271 -11.6540 -1.6213 26 9 1.8329 -12.5543 -1.0167 27 6 2.3429 -7.7246 -0.0030 28 1 -0.4849 0.8401 0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1242 -3.7315 -0.8905 31 1 4.7202 -6.4719 0.9379 32 1 4.5021 -5.0536 -0.1173 33 1 6.0013 -6.8105 -1.1238 34 1 4.5582 -6.4752 -2.1115 35 1 4.8438 -8.7721 -0.1210 36 1 4.9676 -8.9206 -1.8903 37 1 3.1793 -10.5363 -0.6766 38 1 -1.1857 -9.1155 -3.2938 39 1 -1.8351 -11.4833 -3.1927 40 1 1.2595 -7.7209 -0.1216 41 1 2.6081 -8.2098 0.9364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095286444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -18.062446 kcal Electronic energy + Delta-G solvation = -26608.534726 eV Core-core repulsion = 22564.708349 eV Total energy + Delta-G solvation = -4043.826377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.31798 -41.25931 -40.01990 -37.85373 -35.93887 -34.06612 -32.61827 -32.43366 -31.38290 -29.80756 -28.38823 -25.61293 -25.30474 -24.85504 -24.21847 -22.62292 -21.24106 -19.22240 -18.72813 -18.30529 -17.91856 -17.61592 -16.77367 -16.69242 -15.79964 -15.76617 -15.34395 -15.09190 -14.81344 -14.66212 -14.32574 -14.28623 -14.04925 -13.89207 -13.53664 -13.33459 -13.08805 -12.99740 -12.57769 -12.25505 -11.98472 -11.87850 -11.60965 -11.32396 -11.24387 -11.05036 -11.04952 -10.89128 -10.77571 -10.50973 -9.82290 -9.56178 -9.37084 -9.06880 -8.66920 -8.23797 -8.16251 -6.51073 -6.22350 -3.93081 0.46079 0.81220 2.39116 2.94416 3.04021 3.15089 3.22437 3.25460 3.28355 3.31846 3.58415 3.86322 3.94888 4.19261 4.35855 4.53234 4.61220 4.72320 4.78679 4.86812 4.95050 5.07059 5.12645 5.18119 5.20466 5.28520 5.49849 5.50949 5.62763 5.63185 5.65480 5.82654 5.85505 5.92249 6.02350 6.09512 6.39653 6.59997 6.66639 7.04990 7.50466 7.52260 7.58254 8.33898 8.54631 9.22695 10.85021 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002445 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.152722 B =11446.951003 C =12547.416334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.512 6.512 13 N -0.618 5.618 14 C 0.105 3.895 15 C -0.131 4.131 16 C -0.127 4.127 17 C 0.142 3.858 18 H 0.098 0.902 19 N -0.703 5.703 20 C 0.353 3.647 21 N -0.470 5.470 22 C 0.104 3.896 23 C 0.011 3.989 24 N -0.432 5.432 25 C 0.192 3.808 26 F -0.111 7.111 27 C 0.106 3.894 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.414 0.586 38 H 0.181 0.819 39 H 0.177 0.823 40 H 0.098 0.902 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.630 -22.250 -4.358 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.300 4.300 11 C 0.323 3.677 12 O -0.385 6.385 13 N -0.355 5.355 14 C -0.019 4.019 15 C -0.170 4.170 16 C -0.165 4.165 17 C 0.036 3.964 18 H 0.116 0.884 19 N -0.336 5.336 20 C 0.111 3.889 21 N -0.193 5.193 22 C -0.057 4.057 23 C -0.149 4.149 24 N -0.151 5.151 25 C 0.027 3.973 26 F -0.090 7.090 27 C -0.019 4.019 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.198 0.802 39 H 0.194 0.806 40 H 0.116 0.884 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.741 -22.246 -4.338 23.646 hybrid contribution 2.368 0.735 0.317 2.500 sum 9.109 -21.511 -4.021 23.704 Atomic orbital electron populations 1.70011 1.05950 1.27565 1.46736 1.24992 0.95026 0.99008 0.94539 0.86228 0.79244 0.81268 0.78785 1.19934 1.20814 1.19950 1.22815 0.94834 0.91650 1.59092 0.91005 1.85424 1.04942 0.96288 1.96698 1.23553 1.06502 0.95296 1.04687 1.20354 0.86222 0.86140 0.74948 1.90701 1.15161 1.85123 1.47563 1.48028 1.06360 1.05309 1.75780 1.21764 0.80032 1.01854 0.98220 1.21889 1.01086 0.94196 0.99781 1.21815 0.93978 0.97841 1.02865 1.21397 0.94555 0.79725 1.00748 0.88373 1.44569 1.18541 1.09834 1.60670 1.19116 0.89232 0.87924 0.92612 1.68202 1.05212 1.34418 1.11424 1.23663 0.92070 0.96011 0.93917 1.23228 1.00552 0.90039 1.01072 1.67582 1.01975 1.39040 1.06517 1.18379 0.91245 0.84612 1.03113 1.91600 1.69750 1.67270 1.80398 1.21850 1.01519 0.81487 0.97043 0.92123 0.89276 0.89217 0.91390 0.88821 0.89945 0.90791 0.91096 0.90934 0.74850 0.80218 0.80583 0.88376 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.99 4.50 36.01 0.16 -2.83 16 11 C 0.54 10.11 7.72 -10.99 -0.08 10.03 16 12 O -0.51 -11.75 15.27 5.55 0.08 -11.66 16 13 N -0.62 -8.54 2.97 -172.75 -0.51 -9.05 16 14 C 0.10 1.04 6.34 -3.71 -0.02 1.01 16 15 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 16 C -0.13 -0.89 5.35 -26.69 -0.14 -1.03 16 17 C 0.14 1.38 2.63 -67.80 -0.18 1.20 16 18 H 0.10 1.17 7.56 -51.93 -0.39 0.78 16 19 N -0.70 -6.24 5.23 -53.59 -0.28 -6.52 16 20 C 0.35 3.82 7.48 -154.58 -1.16 2.67 16 21 N -0.47 -5.49 9.38 -12.17 -0.11 -5.60 16 22 C 0.10 0.93 11.21 -17.41 -0.20 0.74 16 23 C 0.01 0.09 11.21 -17.40 -0.19 -0.10 16 24 N -0.43 -4.80 10.50 -13.24 -0.14 -4.94 16 25 C 0.19 2.12 8.47 -16.93 -0.14 1.98 16 26 F -0.11 -1.17 16.68 2.25 0.04 -1.13 16 27 C 0.11 1.32 6.03 -3.70 -0.02 1.29 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.09 1.64 7.94 -51.91 -0.41 1.23 16 30 H 0.09 1.64 7.70 -51.92 -0.40 1.24 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.96 5.94 -51.93 -0.31 0.65 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.41 2.80 8.09 -40.82 -0.33 2.47 16 38 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.10 1.55 7.00 -51.93 -0.36 1.18 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -35.85 362.02 -9.05 -44.89 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.13 Total: 0.51 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.94 Total: 1.00 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.31 Total: -51.39 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.85 -9.05 -44.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095286444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.832 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds