Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 120.00434 * 2 1 4 4 H 1.48496 * 109.47174 * 240.00519 * 3 2 1 5 5 H 1.48502 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47090 * 120.00111 * 3 2 1 7 7 C 1.38805 * 119.99365 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99595 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00033 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47103 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00045 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.46932 * 120.62601 * 0.02562 * 13 11 10 15 15 C 1.53195 * 108.77159 * 233.60477 * 14 13 11 16 16 C 1.53043 * 109.31302 * 305.36601 * 15 14 13 17 17 C 1.53045 * 109.53648 * 61.36607 * 16 15 14 18 18 H 1.09001 * 109.49590 * 58.61744 * 17 16 15 19 19 N 1.46500 * 109.49255 * 178.67995 * 17 16 15 20 20 C 1.39121 * 119.99657 * 204.93157 * 19 17 16 21 21 N 1.32568 * 120.11104 * 0.02562 * 20 19 17 22 22 C 1.32307 * 119.94201 * 180.02562 * 21 20 19 23 23 C 1.38062 * 120.16738 * 359.97438 * 22 21 20 24 24 N 1.32344 * 120.21891 * 0.28178 * 23 22 21 25 25 C 1.32073 * 120.05728 * 359.48593 * 24 23 22 26 26 F 1.35104 * 120.08241 * 180.26028 * 25 24 23 27 27 C 1.46929 * 120.60669 * 180.02562 * 13 11 10 28 28 H 0.96998 * 119.99461 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46734 * 60.00174 * 10 9 7 30 30 H 1.08996 * 109.46587 * 300.00069 * 10 9 7 31 31 H 1.09000 * 109.58802 * 113.82208 * 14 13 11 32 32 H 1.08995 * 109.70491 * 353.45978 * 14 13 11 33 33 H 1.08998 * 109.49637 * 185.41563 * 15 14 13 34 34 H 1.09004 * 109.49466 * 65.31918 * 15 14 13 35 35 H 1.08994 * 109.46030 * 301.34094 * 16 15 14 36 36 H 1.09002 * 109.44509 * 181.37568 * 16 15 14 37 37 H 0.96998 * 120.00546 * 24.93720 * 19 17 16 38 38 H 1.07999 * 119.91534 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.88548 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.61547 * 6.61808 * 27 13 11 41 41 H 1.08999 * 109.56362 * 246.19516 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2855 2.7464 0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8916 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0021 13 7 2.8437 -6.3433 -0.0018 14 6 4.2956 -6.1175 -0.0013 15 6 4.9152 -6.8912 -1.1693 16 6 4.5080 -8.3634 -1.0740 17 6 2.9851 -8.4804 -1.1709 18 1 2.6463 -8.0500 -2.1132 19 7 2.5985 -9.8923 -1.1112 20 6 1.3983 -10.3093 -1.6777 21 7 0.6030 -9.4311 -2.2725 22 6 -0.5379 -9.8313 -2.8097 23 6 -0.9025 -11.1617 -2.7531 24 7 -0.1160 -12.0431 -2.1564 25 6 1.0271 -11.6540 -1.6213 26 9 1.8329 -12.5543 -1.0167 27 6 2.3429 -7.7246 -0.0030 28 1 -0.4849 0.8401 0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1242 -3.7315 -0.8905 31 1 4.7202 -6.4719 0.9379 32 1 4.5021 -5.0536 -0.1173 33 1 6.0013 -6.8105 -1.1238 34 1 4.5582 -6.4752 -2.1115 35 1 4.8438 -8.7721 -0.1210 36 1 4.9676 -8.9206 -1.8903 37 1 3.1793 -10.5363 -0.6766 38 1 -1.1857 -9.1155 -3.2938 39 1 -1.8351 -11.4833 -3.1927 40 1 1.2595 -7.7209 -0.1216 41 1 2.6081 -8.2098 0.9364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095286444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -43.474502 kcal Electronic energy + Delta-G solvation = -26609.636676 eV Core-core repulsion = 22564.708349 eV Total energy + Delta-G solvation = -4044.928327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.11566 -42.03554 -41.18056 -38.96238 -36.86709 -34.90580 -34.57499 -33.55994 -32.27857 -31.00813 -29.40494 -27.67963 -26.27768 -25.78856 -24.98775 -23.41428 -22.16428 -20.50874 -19.56316 -19.47897 -19.08275 -18.58100 -18.16617 -17.51578 -17.00782 -16.86580 -16.80633 -16.23752 -16.00249 -15.66295 -15.64129 -15.09812 -15.04802 -14.99970 -14.50387 -14.43507 -14.32694 -14.09961 -13.79561 -13.45749 -13.18213 -13.02912 -12.85705 -12.73950 -12.62392 -12.40218 -12.05017 -12.00491 -11.72528 -11.65514 -11.32963 -11.11840 -10.88988 -10.31628 -10.25165 -9.76553 -8.95260 -8.66724 -8.33440 -6.12009 -0.30205 0.04405 1.24074 1.44116 1.44907 1.53352 1.56957 1.72011 2.14558 2.28437 2.41787 2.56395 3.00641 3.16939 3.20702 3.25515 3.58596 3.74293 3.88415 3.92681 4.01057 4.04242 4.18103 4.26310 4.28765 4.43675 4.48318 4.53917 4.56044 4.74560 4.79208 4.87917 5.02969 5.10774 5.13686 5.34819 5.42410 5.46914 5.78422 5.90567 6.20478 6.26925 6.34229 6.79597 7.07524 7.13439 8.75611 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002445 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.152722 B =11446.951003 C =12547.416334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.121 4.121 11 C 0.531 3.469 12 O -0.566 6.566 13 N -0.604 5.604 14 C 0.093 3.907 15 C -0.125 4.125 16 C -0.119 4.119 17 C 0.153 3.847 18 H 0.073 0.927 19 N -0.694 5.694 20 C 0.344 3.656 21 N -0.501 5.501 22 C 0.100 3.900 23 C 0.021 3.979 24 N -0.454 5.454 25 C 0.178 3.822 26 F -0.111 7.111 27 C 0.106 3.894 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.425 0.575 38 H 0.204 0.796 39 H 0.213 0.787 40 H 0.059 0.941 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 -22.790 -4.534 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.272 4.272 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.338 5.338 14 C -0.028 4.028 15 C -0.163 4.163 16 C -0.157 4.157 17 C 0.047 3.953 18 H 0.091 0.909 19 N -0.329 5.329 20 C 0.102 3.898 21 N -0.225 5.225 22 C -0.060 4.060 23 C -0.139 4.139 24 N -0.173 5.173 25 C 0.014 3.986 26 F -0.091 7.091 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.265 0.735 38 H 0.221 0.779 39 H 0.230 0.770 40 H 0.077 0.923 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.857 -22.845 -4.504 25.285 hybrid contribution 1.402 0.766 0.350 1.635 sum 11.259 -22.080 -4.154 25.130 Atomic orbital electron populations 1.70188 1.08025 1.28650 1.47997 1.26145 0.95958 1.03353 0.93748 0.85000 0.77794 0.75627 0.79558 1.18538 1.20538 1.18591 1.23159 0.95349 0.91824 1.58895 0.89764 1.85640 1.10714 0.99343 1.97031 1.23356 1.03346 0.94037 1.06457 1.20207 0.86001 0.86763 0.75113 1.90682 1.17429 1.85756 1.50532 1.48018 1.07715 1.04687 1.73411 1.22175 0.77255 1.02577 1.00806 1.21883 1.02733 0.93877 0.97821 1.21812 0.91202 0.97837 1.04817 1.21191 0.96461 0.79602 0.98034 0.90898 1.44488 1.18183 1.09642 1.60540 1.19191 0.89758 0.87857 0.92971 1.68219 1.06454 1.35415 1.12364 1.24161 0.91592 0.97011 0.93281 1.23807 1.01044 0.89443 0.99641 1.67630 1.02413 1.40030 1.07271 1.18425 0.91603 0.84745 1.03855 1.91585 1.69792 1.67239 1.80472 1.21929 0.99608 0.80996 0.99263 0.92026 0.87284 0.87284 0.88655 0.88992 0.86664 0.92186 0.88847 0.89278 0.73522 0.77912 0.77039 0.92283 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.54 -30.85 9.50 67.96 0.65 -30.20 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.79 16 10 C -0.12 -4.81 4.50 71.24 0.32 -4.49 16 11 C 0.53 20.38 7.72 87.66 0.68 21.06 16 12 O -0.57 -27.33 15.27 -3.04 -0.05 -27.38 16 13 N -0.60 -16.13 2.97 -818.85 -2.43 -18.56 16 14 C 0.09 1.57 6.34 86.36 0.55 2.11 16 15 C -0.12 -1.46 6.08 30.67 0.19 -1.27 16 16 C -0.12 -1.26 5.35 30.62 0.16 -1.09 16 17 C 0.15 2.81 2.63 45.08 0.12 2.93 16 18 H 0.07 1.75 7.56 -2.39 -0.02 1.73 16 19 N -0.69 -11.70 5.23 -323.48 -1.69 -13.39 16 20 C 0.34 7.45 7.48 133.09 1.00 8.44 16 21 N -0.50 -11.94 9.38 -192.42 -1.80 -13.74 16 22 C 0.10 1.77 11.21 84.58 0.95 2.72 16 23 C 0.02 0.33 11.21 84.57 0.95 1.28 16 24 N -0.45 -9.86 10.50 -195.80 -2.06 -11.92 16 25 C 0.18 3.91 8.47 84.99 0.72 4.63 16 26 F -0.11 -2.30 16.68 44.97 0.75 -1.55 16 27 C 0.11 2.61 6.03 86.37 0.52 3.13 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.11 3.88 7.94 -2.39 -0.02 3.86 16 30 H 0.11 3.89 7.70 -2.40 -0.02 3.87 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.61 5.94 -2.39 -0.01 1.59 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.42 5.04 8.09 -92.71 -0.75 4.29 16 38 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.06 1.95 7.00 -2.39 -0.02 1.94 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -82.98 362.02 1.45 -81.53 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.33 Total: 14.99 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 7.26 Total: 10.43 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -7.70 Total: -113.38 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.75 Total: -1.55 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.79 kcal Total: -82.98 1.45 -81.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095286444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.054 kcal (2) G-P(sol) polarization free energy of solvation -82.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds