Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47381 * 300.00161 * 3 2 1 6 6 H 1.48503 * 109.47180 * 60.00078 * 3 2 1 7 7 C 1.38794 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00250 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00382 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00268 * 180.02562 * 11 10 9 14 14 C 1.46995 * 120.60954 * 0.02562 * 13 11 10 15 15 C 1.53196 * 108.73708 * 126.39083 * 14 13 11 16 16 C 1.53039 * 109.33748 * 54.62190 * 15 14 13 17 17 C 1.53042 * 109.54198 * 298.62051 * 16 15 14 18 18 H 1.08998 * 109.49487 * 301.38422 * 17 16 15 19 19 N 1.46490 * 109.50257 * 181.31697 * 17 16 15 20 20 C 1.38564 * 120.00409 * 154.99737 * 19 17 16 21 21 C 1.39463 * 120.51135 * 0.02562 * 20 19 17 22 22 C 1.38470 * 118.31008 * 180.02562 * 21 20 19 23 23 F 1.35104 * 120.43263 * 180.02562 * 22 21 20 24 24 N 1.32794 * 119.14330 * 0.02562 * 22 21 20 25 25 C 1.31756 * 120.95641 * 359.97438 * 24 22 21 26 26 N 1.31764 * 121.86436 * 359.71333 * 25 24 22 27 27 C 1.46925 * 120.63449 * 180.02562 * 13 11 10 28 28 H 0.97005 * 119.99678 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46776 * 60.00096 * 10 9 7 30 30 H 1.08998 * 109.46783 * 300.00677 * 10 9 7 31 31 H 1.09001 * 109.63157 * 6.60495 * 14 13 11 32 32 H 1.08996 * 109.58534 * 246.14994 * 14 13 11 33 33 H 1.09002 * 109.49815 * 294.65503 * 15 14 13 34 34 H 1.09000 * 109.49595 * 174.58900 * 15 14 13 35 35 H 1.09006 * 109.46255 * 58.64043 * 16 15 14 36 36 H 1.08998 * 109.45791 * 178.60886 * 16 15 14 37 37 H 0.97008 * 119.99540 * 334.99878 * 19 17 16 38 38 H 1.08000 * 120.84659 * 359.97438 * 21 20 19 39 39 H 1.08004 * 119.07013 * 180.02562 * 25 24 22 40 40 H 1.09004 * 109.58683 * 113.84331 * 27 13 11 41 41 H 1.08993 * 109.58510 * 353.41407 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0021 13 7 2.8440 -6.3431 -0.0008 14 6 4.2964 -6.1168 0.0009 15 6 4.9139 -6.8921 1.1690 16 6 4.5069 -8.3641 1.0719 17 6 2.9839 -8.4814 1.1665 18 1 2.6438 -8.0518 2.1088 19 7 2.5974 -9.8931 1.1050 20 6 1.4019 -10.3093 1.6685 21 6 0.5582 -9.3934 2.2965 22 6 -0.6250 -9.8591 2.8446 23 9 -1.4742 -9.0091 3.4624 24 7 -0.9143 -11.1520 2.7552 25 6 -0.0940 -11.9901 2.1547 26 7 1.0386 -11.5881 1.6146 27 6 2.3439 -7.7247 -0.0019 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1244 -3.7313 -0.8905 31 1 4.5011 -5.0528 0.1197 32 1 4.7223 -6.4704 -0.9381 33 1 4.5557 -6.4769 2.1111 34 1 6.0001 -6.8113 1.1255 35 1 4.8439 -8.7720 0.1188 36 1 4.9654 -8.9223 1.8881 37 1 3.1784 -10.5365 0.6698 38 1 0.8215 -8.3475 2.3545 39 1 -0.3598 -13.0355 2.0991 40 1 2.6109 -8.2091 -0.9412 41 1 1.2602 -7.7211 0.1147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095286858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -20.060701 kcal Electronic energy + Delta-G solvation = -26619.680860 eV Core-core repulsion = 22575.767832 eV Total energy + Delta-G solvation = -4043.913028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.28990 -41.24581 -40.13545 -38.01439 -36.03664 -33.45774 -32.60662 -32.46409 -31.49412 -30.34487 -28.63328 -25.68964 -25.37860 -24.80675 -24.10607 -22.68009 -21.37783 -19.37385 -18.81847 -18.51118 -17.75232 -16.88705 -16.49435 -16.28740 -15.98698 -15.88106 -15.68958 -15.28762 -14.94493 -14.84166 -14.63763 -14.42821 -14.11453 -13.97358 -13.69901 -13.45091 -13.19926 -13.10278 -12.61593 -12.30198 -12.02261 -11.61383 -11.43150 -11.31234 -11.10323 -11.06684 -11.05125 -10.99461 -10.78825 -10.11204 -9.84138 -9.77221 -9.50134 -9.11356 -8.92521 -8.50951 -8.27162 -6.55093 -6.25498 -3.96725 0.58946 0.89558 2.29745 2.87443 2.92657 3.15762 3.18735 3.22527 3.27998 3.44262 3.51951 3.88757 4.14342 4.17079 4.25490 4.36530 4.49750 4.64821 4.75334 4.82398 4.88406 4.93999 5.07845 5.09862 5.18332 5.25879 5.38547 5.41661 5.48729 5.53437 5.54885 5.74272 5.78375 5.80360 5.92106 6.03376 6.22176 6.43577 6.70129 7.04209 7.38511 7.55828 7.77975 8.31182 8.42429 9.19897 10.81926 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.002641 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.211783 B =10599.851374 C =12017.954153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.512 6.512 13 N -0.619 5.619 14 C 0.104 3.896 15 C -0.132 4.132 16 C -0.124 4.124 17 C 0.134 3.866 18 H 0.092 0.908 19 N -0.697 5.697 20 C 0.464 3.536 21 C -0.314 4.314 22 C 0.387 3.613 23 F -0.097 7.097 24 N -0.592 5.592 25 C 0.373 3.627 26 N -0.585 5.585 27 C 0.099 3.901 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.156 0.844 39 H 0.207 0.793 40 H 0.069 0.931 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.251 -22.419 2.879 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.385 6.385 13 N -0.356 5.356 14 C -0.019 4.019 15 C -0.171 4.171 16 C -0.162 4.162 17 C 0.028 3.972 18 H 0.110 0.890 19 N -0.328 5.328 20 C 0.220 3.780 21 C -0.343 4.343 22 C 0.230 3.770 23 F -0.076 7.076 24 N -0.318 5.318 25 C 0.084 3.916 26 N -0.311 5.311 27 C -0.026 4.026 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.174 0.826 39 H 0.223 0.777 40 H 0.088 0.912 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.072 -23.229 2.864 25.101 hybrid contribution 2.236 2.052 -0.016 3.035 sum 11.307 -21.177 2.848 24.175 Atomic orbital electron populations 1.70027 1.05958 1.27406 1.46771 1.24998 0.95032 0.99064 0.94511 0.86114 0.79543 0.81875 0.77941 1.19622 1.20550 1.20548 1.22879 0.94879 0.91550 1.59024 0.90879 1.85465 1.04808 0.96413 1.96703 1.23553 1.06613 0.95136 1.04779 1.20416 0.86197 0.86221 0.74850 1.90715 1.15156 1.85126 1.47543 1.48075 1.06544 1.05095 1.75932 1.21808 0.79793 1.01990 0.98318 1.21908 1.01354 0.94044 0.99771 1.21778 0.93152 0.97969 1.03289 1.21555 0.95837 0.79588 1.00267 0.88990 1.44484 1.18977 1.09205 1.60128 1.18242 0.85878 0.88111 0.85797 1.21942 0.97620 1.03521 1.11246 1.18014 0.85247 0.85586 0.88145 1.91697 1.69545 1.67353 1.79017 1.67860 1.36810 1.02479 1.24623 1.24514 0.82905 0.99208 0.84978 1.68000 1.20987 1.15380 1.26694 1.21932 1.01274 0.81819 0.97543 0.92186 0.89140 0.89171 0.88670 0.91202 0.90751 0.89714 0.90754 0.90640 0.75075 0.82590 0.77666 0.91233 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.88 4.50 36.00 0.16 -2.72 16 11 C 0.54 9.51 7.72 -10.99 -0.08 9.43 16 12 O -0.51 -11.21 15.27 5.55 0.08 -11.13 16 13 N -0.62 -7.69 2.97 -172.70 -0.51 -8.20 16 14 C 0.10 0.90 6.34 -3.67 -0.02 0.88 16 15 C -0.13 -0.83 6.08 -26.61 -0.16 -0.99 16 16 C -0.12 -0.68 5.35 -26.69 -0.14 -0.83 16 17 C 0.13 1.05 2.30 -67.80 -0.16 0.90 16 18 H 0.09 0.83 6.51 -51.93 -0.34 0.49 16 19 N -0.70 -5.27 5.23 -53.68 -0.28 -5.55 16 20 C 0.46 4.67 7.69 -154.77 -1.19 3.48 16 21 C -0.31 -3.59 8.98 -39.04 -0.35 -3.94 16 22 C 0.39 4.92 8.50 -17.05 -0.14 4.78 16 23 F -0.10 -1.34 17.30 2.25 0.04 -1.30 16 24 N -0.59 -7.08 10.45 -14.98 -0.16 -7.23 16 25 C 0.37 3.49 12.28 -92.21 -1.13 2.36 16 26 N -0.59 -5.82 10.47 -13.84 -0.14 -5.97 16 27 C 0.10 1.06 5.99 -3.70 -0.02 1.04 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.09 1.58 7.69 -51.92 -0.40 1.18 16 30 H 0.09 1.59 7.95 -51.92 -0.41 1.18 16 31 H 0.10 0.87 5.94 -51.93 -0.31 0.57 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.41 2.43 8.73 -40.82 -0.36 2.07 16 38 H 0.16 1.79 6.23 -52.49 -0.33 1.47 16 39 H 0.21 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.32 6.61 -51.93 -0.34 0.97 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -35.00 359.77 -10.09 -45.09 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.99 Total: 0.01 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -3.05 Total: 1.77 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.36 Total: -52.05 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.00 -10.09 -45.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095286858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.028 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds