Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99624 * 2 1 4 4 H 1.48506 * 109.46799 * 269.99931 * 3 2 1 5 5 H 1.48495 * 109.47199 * 29.99607 * 3 2 1 6 6 H 1.48494 * 109.47097 * 149.99826 * 3 2 1 7 7 C 1.38800 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99832 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99702 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46923 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00183 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99783 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99693 * 179.97438 * 13 11 10 15 15 C 1.53122 * 109.51946 * 205.00163 * 14 13 11 16 16 C 1.53040 * 109.27325 * 182.44579 * 15 14 13 17 17 N 1.46845 * 109.52671 * 59.18112 * 16 15 14 18 18 C 1.39157 * 110.99959 * 174.16056 * 17 16 15 19 19 C 1.39204 * 120.05681 * 179.97438 * 18 17 16 20 20 N 1.32016 * 119.92981 * 179.97438 * 19 18 17 21 21 C 1.32400 * 120.05369 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.93877 * 179.97438 * 21 20 19 23 23 C 1.38474 * 120.12317 * 359.97234 * 21 20 19 24 24 N 1.32213 * 120.06586 * 0.30410 * 23 21 20 25 25 C 1.46849 * 111.19496 * 298.25761 * 17 16 15 26 26 C 1.53031 * 109.52743 * 61.74216 * 25 17 16 27 27 H 0.97003 * 120.00527 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47170 * 59.99885 * 10 9 7 29 29 H 1.09002 * 109.47126 * 299.99676 * 10 9 7 30 30 H 0.96996 * 119.99773 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.57551 * 325.16164 * 14 13 11 32 32 H 1.08992 * 109.50101 * 62.50616 * 15 14 13 33 33 H 1.08995 * 109.50121 * 302.38442 * 15 14 13 34 34 H 1.09003 * 109.46419 * 299.16110 * 16 15 14 35 35 H 1.08996 * 109.46025 * 179.19780 * 16 15 14 36 36 H 1.07998 * 120.04092 * 0.02566 * 19 18 17 37 37 H 1.08002 * 119.96229 * 180.02562 * 23 21 20 38 38 H 1.09003 * 109.45984 * 181.75703 * 25 17 16 39 39 H 1.09004 * 109.45941 * 301.72022 * 25 17 16 40 40 H 1.08997 * 109.50814 * 180.87809 * 26 25 17 41 41 H 1.09005 * 109.50212 * 60.75612 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7913 -5.5023 0.0038 13 7 2.8444 -6.3431 0.0039 14 6 2.3306 -7.7150 0.0050 15 6 3.3764 -8.6524 0.6152 16 6 2.8594 -10.0917 0.5579 17 7 2.5974 -10.4640 -0.8382 18 6 2.2509 -11.8079 -0.9394 19 6 1.9617 -12.3616 -2.1834 20 7 1.6338 -13.6370 -2.2765 21 6 1.5795 -14.3889 -1.1880 22 9 1.2432 -15.6937 -1.2860 23 6 1.8668 -13.8404 0.0505 24 7 2.1904 -12.5623 0.1500 25 6 1.5621 -9.6075 -1.4307 26 6 2.0403 -8.1539 -1.4329 27 1 -0.4851 0.8400 -0.0004 28 1 3.1246 -3.7304 0.8927 29 1 3.1245 -3.7321 -0.8872 30 1 3.8011 -6.1834 0.0041 31 1 1.4135 -7.7611 0.5922 32 1 3.5559 -8.3712 1.6528 33 1 4.3060 -8.5770 0.0510 34 1 1.9371 -10.1695 1.1337 35 1 3.6076 -10.7634 0.9786 36 1 2.0063 -11.7488 -3.0715 37 1 1.8221 -14.4562 0.9367 38 1 1.3681 -9.9276 -2.4545 39 1 0.6459 -9.6876 -0.8456 40 1 1.2653 -7.5164 -1.8585 41 1 2.9489 -8.0706 -2.0293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095405414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -16.748771 kcal Electronic energy + Delta-G solvation = -25776.164434 eV Core-core repulsion = 21732.395022 eV Total energy + Delta-G solvation = -4043.769412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.50695 -41.87872 -39.93043 -38.58243 -35.54585 -34.65096 -32.46696 -32.41777 -31.42059 -30.12517 -28.65370 -25.89685 -25.55147 -24.94711 -23.36724 -22.97424 -20.49580 -20.28661 -18.75602 -18.56691 -18.10367 -17.81700 -16.82198 -16.41326 -16.32648 -15.55816 -15.39479 -15.15812 -14.85240 -14.82713 -14.73902 -14.29443 -14.14882 -13.83626 -13.76930 -13.52382 -13.18357 -12.78370 -12.63789 -12.29219 -12.10841 -11.91648 -11.86189 -11.62365 -11.21492 -11.08516 -11.04741 -10.91842 -10.76317 -10.47962 -9.84063 -9.83887 -9.44263 -9.09652 -8.96533 -8.72017 -8.27012 -6.53011 -6.24236 -3.95019 0.06982 0.41033 2.64039 2.88047 2.95586 3.02633 3.03105 3.20525 3.25909 3.29622 3.57815 3.64497 3.72805 4.18011 4.23651 4.37418 4.42507 4.49606 4.68832 4.74628 4.83854 4.91670 5.03106 5.10424 5.11118 5.21537 5.29886 5.41867 5.43695 5.57546 5.63137 5.69311 5.82355 5.85271 6.02445 6.10203 6.11091 6.33796 6.57194 6.63265 7.03476 7.57131 7.65421 8.32670 8.55504 9.21232 10.83139 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.045242 B = 0.001694 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.746964 B =16527.440329 C =16725.523787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.734 5.734 14 C 0.144 3.856 15 C -0.127 4.127 16 C 0.068 3.932 17 N -0.466 5.466 18 C 0.261 3.739 19 C 0.081 3.919 20 N -0.447 5.447 21 C 0.219 3.781 22 F -0.105 7.105 23 C 0.073 3.927 24 N -0.452 5.452 25 C 0.059 3.941 26 C -0.129 4.129 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.183 0.817 37 H 0.182 0.818 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.111 -26.821 -0.935 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.388 5.388 14 C 0.038 3.962 15 C -0.165 4.165 16 C -0.059 4.059 17 N -0.183 5.183 18 C 0.026 3.974 19 C -0.085 4.085 20 N -0.165 5.165 21 C 0.063 3.937 22 F -0.084 7.084 23 C -0.089 4.089 24 N -0.172 5.172 25 C -0.066 4.066 26 C -0.168 4.168 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.200 0.800 37 H 0.199 0.801 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.344 -26.941 -1.159 27.702 hybrid contribution 1.852 0.899 0.278 2.077 sum 8.196 -26.042 -0.881 27.315 Atomic orbital electron populations 1.70015 1.05952 1.27481 1.46829 1.24993 0.95027 0.99039 0.94511 0.86168 0.79411 0.81562 0.78362 1.20260 1.20743 1.19699 1.22865 0.94910 0.91646 1.59002 0.90916 1.85389 1.04907 0.96361 1.96727 1.23539 1.06605 0.95387 1.04952 1.20335 0.86550 0.86312 0.74831 1.90697 1.15369 1.85568 1.47487 1.46043 1.09956 1.05004 1.77768 1.20931 0.97919 0.81274 0.96041 1.21952 0.99212 0.93072 1.02313 1.22024 1.02037 0.96234 0.85596 1.59166 1.39986 0.98405 1.20766 1.20961 0.93323 0.92561 0.90582 1.23166 0.97724 0.89787 0.97814 1.67731 1.11337 1.06075 1.31402 1.19002 1.01956 0.81196 0.91555 1.91654 1.89535 1.30495 1.96712 1.23441 0.96433 0.91886 0.97182 1.68479 1.13231 1.05071 1.30383 1.22371 0.91282 0.92678 1.00299 1.22059 1.03250 0.93540 0.97979 0.92168 0.89221 0.89196 0.76711 0.89424 0.89881 0.90234 0.92417 0.88915 0.80015 0.80058 0.89175 0.92601 0.89456 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 11 C 0.53 9.23 7.82 -10.98 -0.09 9.14 16 12 O -0.52 -11.00 15.52 5.56 0.09 -10.91 16 13 N -0.73 -8.65 5.08 -53.68 -0.27 -8.93 16 14 C 0.14 1.45 2.52 -67.80 -0.17 1.28 16 15 C -0.13 -0.92 5.57 -26.65 -0.15 -1.07 16 16 C 0.07 0.51 4.66 -3.83 -0.02 0.49 16 17 N -0.47 -3.52 4.69 -173.09 -0.81 -4.34 16 18 C 0.26 2.11 6.40 -154.63 -0.99 1.12 16 19 C 0.08 0.62 10.34 -17.11 -0.18 0.44 16 20 N -0.45 -4.18 10.50 -13.24 -0.14 -4.32 16 21 C 0.22 1.85 8.43 -17.22 -0.15 1.71 16 22 F -0.10 -0.90 17.29 2.25 0.04 -0.86 16 23 C 0.07 0.51 11.20 -17.30 -0.19 0.32 16 24 N -0.45 -3.76 8.87 -12.17 -0.11 -3.86 16 25 C 0.06 0.44 5.25 -3.84 -0.02 0.42 16 26 C -0.13 -1.17 5.67 -26.65 -0.15 -1.32 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.40 3.59 8.60 -40.82 -0.35 3.24 16 31 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.09 0.68 7.72 -51.93 -0.40 0.28 16 36 H 0.18 0.95 7.15 -52.49 -0.38 0.57 16 37 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.09 0.51 6.69 -51.93 -0.35 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -34.60 362.66 -9.14 -43.74 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.22 Total: -0.18 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.68 Total: -2.97 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.60 Total: -46.56 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.04 Total: -0.86 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.60 -9.14 -43.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095405414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.992 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds