Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99624 * 2 1 4 4 H 1.48506 * 109.46799 * 269.99931 * 3 2 1 5 5 H 1.48495 * 109.47199 * 29.99607 * 3 2 1 6 6 H 1.48494 * 109.47097 * 149.99826 * 3 2 1 7 7 C 1.38800 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99832 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99702 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46923 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00183 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99783 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99693 * 179.97438 * 13 11 10 15 15 C 1.53122 * 109.51946 * 205.00163 * 14 13 11 16 16 C 1.53040 * 109.27325 * 182.44579 * 15 14 13 17 17 N 1.46845 * 109.52671 * 59.18112 * 16 15 14 18 18 C 1.39157 * 110.99959 * 174.16056 * 17 16 15 19 19 C 1.39204 * 120.05681 * 179.97438 * 18 17 16 20 20 N 1.32016 * 119.92981 * 179.97438 * 19 18 17 21 21 C 1.32400 * 120.05369 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.93877 * 179.97438 * 21 20 19 23 23 C 1.38474 * 120.12317 * 359.97234 * 21 20 19 24 24 N 1.32213 * 120.06586 * 0.30410 * 23 21 20 25 25 C 1.46849 * 111.19496 * 298.25761 * 17 16 15 26 26 C 1.53031 * 109.52743 * 61.74216 * 25 17 16 27 27 H 0.97003 * 120.00527 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47170 * 59.99885 * 10 9 7 29 29 H 1.09002 * 109.47126 * 299.99676 * 10 9 7 30 30 H 0.96996 * 119.99773 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.57551 * 325.16164 * 14 13 11 32 32 H 1.08992 * 109.50101 * 62.50616 * 15 14 13 33 33 H 1.08995 * 109.50121 * 302.38442 * 15 14 13 34 34 H 1.09003 * 109.46419 * 299.16110 * 16 15 14 35 35 H 1.08996 * 109.46025 * 179.19780 * 16 15 14 36 36 H 1.07998 * 120.04092 * 0.02566 * 19 18 17 37 37 H 1.08002 * 119.96229 * 180.02562 * 23 21 20 38 38 H 1.09003 * 109.45984 * 181.75703 * 25 17 16 39 39 H 1.09004 * 109.45941 * 301.72022 * 25 17 16 40 40 H 1.08997 * 109.50814 * 180.87809 * 26 25 17 41 41 H 1.09005 * 109.50212 * 60.75612 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7913 -5.5023 0.0038 13 7 2.8444 -6.3431 0.0039 14 6 2.3306 -7.7150 0.0050 15 6 3.3764 -8.6524 0.6152 16 6 2.8594 -10.0917 0.5579 17 7 2.5974 -10.4640 -0.8382 18 6 2.2509 -11.8079 -0.9394 19 6 1.9617 -12.3616 -2.1834 20 7 1.6338 -13.6370 -2.2765 21 6 1.5795 -14.3889 -1.1880 22 9 1.2432 -15.6937 -1.2860 23 6 1.8668 -13.8404 0.0505 24 7 2.1904 -12.5623 0.1500 25 6 1.5621 -9.6075 -1.4307 26 6 2.0403 -8.1539 -1.4329 27 1 -0.4851 0.8400 -0.0004 28 1 3.1246 -3.7304 0.8927 29 1 3.1245 -3.7321 -0.8872 30 1 3.8011 -6.1834 0.0041 31 1 1.4135 -7.7611 0.5922 32 1 3.5559 -8.3712 1.6528 33 1 4.3060 -8.5770 0.0510 34 1 1.9371 -10.1695 1.1337 35 1 3.6076 -10.7634 0.9786 36 1 2.0063 -11.7488 -3.0715 37 1 1.8221 -14.4562 0.9367 38 1 1.3681 -9.9276 -2.4545 39 1 0.6459 -9.6876 -0.8456 40 1 1.2653 -7.5164 -1.8585 41 1 2.9489 -8.0706 -2.0293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095405414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -42.015267 kcal Electronic energy + Delta-G solvation = -25777.260071 eV Core-core repulsion = 21732.395022 eV Total energy + Delta-G solvation = -4044.865049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.13670 -42.48188 -40.95968 -39.55931 -36.46703 -35.33791 -34.57367 -33.40325 -32.07691 -31.11788 -29.76557 -27.66047 -26.49766 -25.71818 -24.02646 -23.69086 -21.64023 -21.18875 -19.81321 -19.33015 -19.17364 -18.69285 -17.75933 -17.47593 -17.39631 -16.86843 -16.47061 -16.13126 -16.04104 -15.80872 -15.56434 -15.39036 -15.02413 -14.81176 -14.60180 -14.54416 -14.32054 -14.16405 -13.59367 -13.34399 -13.15305 -12.99512 -12.88664 -12.69651 -12.56597 -12.49754 -12.26057 -12.02272 -11.75840 -11.61800 -11.13339 -11.10718 -10.86498 -10.44075 -10.25655 -10.06626 -9.32372 -8.64895 -8.33810 -6.11361 -0.51113 -0.18792 1.28553 1.43093 1.48438 1.58568 1.64543 2.04208 2.25747 2.30035 2.30515 2.43944 3.00468 3.02966 3.18153 3.33205 3.59379 3.71610 3.78484 3.90015 3.97328 4.04776 4.11599 4.26165 4.33287 4.34321 4.43248 4.52538 4.55770 4.58916 4.76610 4.82574 4.91743 5.09579 5.13173 5.22745 5.43062 5.46340 5.53191 5.73150 6.03747 6.20784 6.44688 6.55617 7.07814 7.29013 8.75232 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.045242 B = 0.001694 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.746964 B =16527.440329 C =16725.523787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.707 5.707 14 C 0.141 3.859 15 C -0.114 4.114 16 C 0.071 3.929 17 N -0.461 5.461 18 C 0.255 3.745 19 C 0.081 3.919 20 N -0.471 5.471 21 C 0.206 3.794 22 F -0.109 7.109 23 C 0.082 3.918 24 N -0.465 5.465 25 C 0.064 3.936 26 C -0.123 4.123 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.204 0.796 37 H 0.212 0.788 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 -27.409 -0.928 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.360 5.360 14 C 0.036 3.964 15 C -0.152 4.152 16 C -0.056 4.056 17 N -0.178 5.178 18 C 0.020 3.980 19 C -0.084 4.084 20 N -0.190 5.190 21 C 0.051 3.949 22 F -0.089 7.089 23 C -0.080 4.080 24 N -0.184 5.184 25 C -0.062 4.062 26 C -0.162 4.162 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.255 0.745 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.221 0.779 37 H 0.228 0.772 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.145 -27.573 -1.153 29.073 hybrid contribution 1.032 0.927 0.283 1.415 sum 10.177 -26.646 -0.870 28.537 Atomic orbital electron populations 1.70182 1.07957 1.28566 1.48079 1.26116 0.95947 1.03297 0.93793 0.84967 0.78220 0.76106 0.78777 1.19331 1.20412 1.18179 1.23212 0.95365 0.92066 1.58743 0.89886 1.85566 1.10651 0.99228 1.97047 1.23386 1.03490 0.94511 1.06797 1.20028 0.86273 0.86618 0.74869 1.90690 1.17415 1.86031 1.50106 1.45775 1.10281 1.04599 1.75382 1.21087 0.97993 0.80511 0.96796 1.21872 0.98597 0.91921 1.02817 1.21999 1.01758 0.96310 0.85533 1.59177 1.39712 0.98234 1.20720 1.21067 0.93414 0.92668 0.90844 1.23472 0.97040 0.89424 0.98462 1.67712 1.12135 1.06901 1.32243 1.19206 1.02552 0.81112 0.92078 1.91639 1.89657 1.30802 1.96768 1.23837 0.95006 0.91600 0.97604 1.68513 1.13692 1.05618 1.30600 1.22325 0.90749 0.91708 1.01391 1.21948 1.03060 0.94098 0.97063 0.92039 0.87291 0.87169 0.74533 0.91982 0.89033 0.88505 0.93439 0.88281 0.77936 0.77161 0.87120 0.93696 0.91992 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.46 13.22 21.65 0.29 -55.18 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.25 20.57 -56.49 -1.16 -9.42 16 10 C -0.13 -4.90 6.16 71.24 0.44 -4.47 16 11 C 0.54 18.30 7.82 87.66 0.69 18.98 16 12 O -0.56 -24.69 15.52 -3.01 -0.05 -24.73 16 13 N -0.71 -15.38 5.08 -442.14 -2.25 -17.63 16 14 C 0.14 2.66 2.52 45.07 0.11 2.77 16 15 C -0.11 -1.36 5.57 30.65 0.17 -1.19 16 16 C 0.07 0.92 4.66 86.33 0.40 1.32 16 17 N -0.46 -6.05 4.69 -701.53 -3.29 -9.33 16 18 C 0.26 3.69 6.40 132.95 0.85 4.55 16 19 C 0.08 1.12 10.34 84.90 0.88 2.00 16 20 N -0.47 -8.35 10.50 -195.81 -2.06 -10.40 16 21 C 0.21 3.29 8.43 84.66 0.71 4.00 16 22 F -0.11 -1.81 17.29 44.97 0.78 -1.03 16 23 C 0.08 1.01 11.20 84.69 0.95 1.96 16 24 N -0.46 -6.95 8.87 -192.40 -1.71 -8.65 16 25 C 0.06 0.87 5.25 86.32 0.45 1.32 16 26 C -0.12 -2.08 5.67 30.65 0.17 -1.91 16 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 29 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.42 6.17 8.60 -92.71 -0.80 5.37 16 31 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 35 H 0.10 1.22 7.72 -2.39 -0.02 1.20 16 36 H 0.20 1.68 7.15 -2.91 -0.02 1.66 16 37 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.11 1.05 6.69 -2.39 -0.02 1.03 16 39 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -77.79 362.66 -0.20 -77.98 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.28 Total: 12.85 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.94 Total: 0.52 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -9.01 Total: -101.20 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.78 Total: -1.03 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.42 kcal Total: -77.79 -0.20 -77.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095405414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.967 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds