Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99634 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.50621 * 324.92232 * 14 13 11 16 16 C 1.53114 * 109.50296 * 204.80166 * 14 13 11 17 17 C 1.53124 * 109.16088 * 182.40411 * 16 14 13 18 18 C 1.53034 * 109.27406 * 57.65740 * 17 16 14 19 19 N 1.46844 * 109.52632 * 300.81685 * 18 17 16 20 20 C 1.38570 * 111.00343 * 185.83904 * 19 18 17 21 21 C 1.39470 * 120.51318 * 55.79309 * 20 19 18 22 22 C 1.38469 * 118.31375 * 179.97438 * 21 20 19 23 23 F 1.35093 * 120.42974 * 180.02562 * 22 21 20 24 24 N 1.32790 * 119.13741 * 359.97438 * 22 21 20 25 25 C 1.31763 * 120.96133 * 0.02562 * 24 22 21 26 26 N 1.31759 * 121.86183 * 359.70747 * 25 24 22 27 27 C 1.46856 * 111.19619 * 61.74682 * 19 18 17 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 30 30 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 31 31 H 0.96994 * 120.00530 * 359.97438 * 13 11 10 32 32 H 1.08996 * 109.52582 * 302.31038 * 16 14 13 33 33 H 1.09003 * 109.52267 * 62.50349 * 16 14 13 34 34 H 1.08994 * 109.50783 * 297.71820 * 17 16 14 35 35 H 1.08996 * 109.50347 * 177.59762 * 17 16 14 36 36 H 1.08998 * 109.46500 * 180.80389 * 18 17 16 37 37 H 1.08998 * 109.45615 * 60.83285 * 18 17 16 38 38 H 1.08006 * 120.84012 * 0.02921 * 21 20 19 39 39 H 1.08001 * 119.06927 * 179.97438 * 25 24 22 40 40 H 1.08998 * 109.46434 * 178.24713 * 27 19 18 41 41 H 1.08998 * 109.46323 * 58.27253 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.4151 -7.7610 0.5904 16 6 3.3778 -8.6532 0.6062 17 6 2.8577 -10.0922 0.5474 18 6 2.5461 -10.4578 -0.9056 19 7 1.5388 -9.5321 -1.4394 20 6 1.1374 -9.9135 -2.7097 21 6 0.6319 -11.1931 -2.9383 22 6 0.2439 -11.5258 -4.2252 23 9 -0.2520 -12.7532 -4.4946 24 7 0.3647 -10.6223 -5.1908 25 6 0.8465 -9.4219 -4.9396 26 7 1.2225 -9.0627 -3.7290 27 6 2.0340 -8.1496 -1.4370 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7314 0.8906 31 1 3.8008 -6.1836 0.0006 32 1 4.3057 -8.5779 0.0393 33 1 3.5601 -8.3740 1.6439 34 1 1.9509 -10.1762 1.1462 35 1 3.6167 -10.7698 0.9383 36 1 2.1620 -11.4769 -0.9494 37 1 3.4563 -10.3869 -1.5011 38 1 0.5445 -11.9061 -2.1318 39 1 0.9318 -8.7110 -5.7481 40 1 1.2780 -7.4923 -1.8664 41 1 2.9465 -8.0896 -2.0300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096167002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -16.826458 kcal Electronic energy + Delta-G solvation = -26252.959108 eV Core-core repulsion = 22209.186327 eV Total energy + Delta-G solvation = -4043.772781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.56645 -41.65911 -39.91797 -38.56470 -35.49311 -33.79456 -32.73672 -32.43088 -31.42917 -30.54167 -28.35970 -25.77338 -25.50366 -25.10304 -23.15175 -22.91452 -20.54728 -20.28114 -18.84294 -18.54161 -17.83670 -16.79258 -16.70406 -16.35539 -16.17716 -15.73297 -15.40432 -15.24397 -15.02782 -14.81704 -14.79959 -14.47165 -14.08972 -13.94950 -13.80829 -13.57099 -13.15567 -13.00468 -12.56941 -12.27450 -11.81502 -11.56166 -11.48586 -11.20913 -11.05303 -11.04400 -10.98418 -10.87991 -10.75391 -10.24711 -9.89655 -9.82952 -9.43103 -9.08617 -9.04318 -8.93724 -8.24577 -6.50485 -6.21861 -3.92592 0.39499 0.52815 2.61545 2.95950 3.03328 3.07267 3.23083 3.24585 3.27863 3.31608 3.62803 3.75852 4.17491 4.20061 4.32724 4.34849 4.45406 4.55463 4.62607 4.79423 4.87715 5.03944 5.07127 5.13187 5.14239 5.19394 5.22832 5.37294 5.50919 5.58605 5.66196 5.75208 5.85750 5.87181 6.01621 6.08523 6.12387 6.46449 6.51359 6.63415 7.58751 7.59589 7.65197 8.34562 8.57293 9.23261 10.85475 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.002253 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.636106 B =12422.768982 C =13583.792808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.734 5.734 14 C 0.147 3.853 15 H 0.098 0.902 16 C -0.132 4.132 17 C -0.114 4.114 18 C 0.056 3.944 19 N -0.466 5.466 20 C 0.389 3.611 21 C -0.271 4.271 22 C 0.371 3.629 23 F -0.100 7.100 24 N -0.574 5.574 25 C 0.364 3.636 26 N -0.557 5.557 27 C 0.054 3.946 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.160 0.840 39 H 0.210 0.790 40 H 0.101 0.899 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 -25.440 -3.093 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.385 6.385 13 N -0.388 5.388 14 C 0.041 3.959 15 H 0.116 0.884 16 C -0.170 4.170 17 C -0.152 4.152 18 C -0.069 4.069 19 N -0.182 5.182 20 C 0.149 3.851 21 C -0.298 4.298 22 C 0.212 3.788 23 F -0.079 7.079 24 N -0.297 5.297 25 C 0.075 3.925 26 N -0.278 5.278 27 C -0.073 4.073 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.177 0.823 39 H 0.227 0.773 40 H 0.119 0.881 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.565 -25.074 -3.397 26.141 hybrid contribution 2.664 0.594 0.055 2.730 sum 9.230 -24.480 -3.341 26.375 Atomic orbital electron populations 1.70009 1.05950 1.27577 1.46735 1.24995 0.95027 0.99022 0.94535 0.86226 0.79240 0.81261 0.78789 1.20813 1.19944 1.19941 1.22823 0.94861 0.91674 1.59098 0.90982 1.85419 1.04819 0.96285 1.96722 1.23534 1.06635 0.95304 1.04938 1.20358 0.86572 0.86286 0.74851 1.90719 1.15295 1.85471 1.47018 1.45987 1.09961 1.04853 1.77981 1.20851 0.98548 0.81311 0.95160 0.88372 1.21928 0.98261 0.94503 1.02309 1.21576 1.02522 0.96266 0.94858 1.22393 0.92275 0.95569 0.96644 1.58618 1.38588 1.05886 1.15131 1.19895 0.88998 0.87872 0.88325 1.21985 1.10296 0.99677 0.97858 1.18096 0.90301 0.81122 0.89327 1.91671 1.83860 1.37766 1.94646 1.67893 1.20920 1.04285 1.36588 1.24752 0.85815 0.89128 0.92810 1.68514 1.22270 1.36775 1.00268 1.22557 1.01118 0.85962 0.97654 0.92116 0.89188 0.89203 0.76703 0.91292 0.90231 0.90029 0.89855 0.89256 0.92823 0.82275 0.77335 0.88114 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 C 0.53 9.52 7.81 -10.98 -0.09 9.43 16 12 O -0.51 -11.30 15.53 5.56 0.09 -11.22 16 13 N -0.73 -9.01 5.08 -53.73 -0.27 -9.28 16 14 C 0.15 1.60 2.62 -67.85 -0.18 1.42 16 15 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 16 C -0.13 -0.90 5.47 -26.61 -0.15 -1.05 16 17 C -0.11 -0.62 6.09 -26.65 -0.16 -0.78 16 18 C 0.06 0.36 5.25 -3.84 -0.02 0.34 16 19 N -0.47 -4.54 4.68 -173.08 -0.81 -5.35 16 20 C 0.39 4.08 6.41 -154.76 -0.99 3.09 16 21 C -0.27 -2.42 9.26 -39.04 -0.36 -2.78 16 22 C 0.37 3.77 8.50 -17.05 -0.14 3.63 16 23 F -0.10 -0.99 17.30 2.25 0.04 -0.95 16 24 N -0.57 -6.29 10.45 -14.98 -0.16 -6.45 16 25 C 0.36 3.62 12.28 -92.21 -1.13 2.48 16 26 N -0.56 -6.36 8.85 -13.84 -0.12 -6.48 16 27 C 0.05 0.62 4.24 -3.83 -0.02 0.60 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 31 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.42 6.74 -51.93 -0.35 0.07 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.16 1.02 7.22 -52.48 -0.38 0.64 16 39 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.10 1.53 7.72 -51.93 -0.40 1.13 16 41 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -35.47 362.80 -10.31 -45.78 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.22 Total: 0.65 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.82 Total: 0.74 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.63 Total: -52.93 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.47 -10.31 -45.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096167002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.956 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds