Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99634 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.50621 * 324.92232 * 14 13 11 16 16 C 1.53114 * 109.50296 * 204.80166 * 14 13 11 17 17 C 1.53124 * 109.16088 * 182.40411 * 16 14 13 18 18 C 1.53034 * 109.27406 * 57.65740 * 17 16 14 19 19 N 1.46844 * 109.52632 * 300.81685 * 18 17 16 20 20 C 1.38570 * 111.00343 * 185.83904 * 19 18 17 21 21 C 1.39470 * 120.51318 * 55.79309 * 20 19 18 22 22 C 1.38469 * 118.31375 * 179.97438 * 21 20 19 23 23 F 1.35093 * 120.42974 * 180.02562 * 22 21 20 24 24 N 1.32790 * 119.13741 * 359.97438 * 22 21 20 25 25 C 1.31763 * 120.96133 * 0.02562 * 24 22 21 26 26 N 1.31759 * 121.86183 * 359.70747 * 25 24 22 27 27 C 1.46856 * 111.19619 * 61.74682 * 19 18 17 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 30 30 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 31 31 H 0.96994 * 120.00530 * 359.97438 * 13 11 10 32 32 H 1.08996 * 109.52582 * 302.31038 * 16 14 13 33 33 H 1.09003 * 109.52267 * 62.50349 * 16 14 13 34 34 H 1.08994 * 109.50783 * 297.71820 * 17 16 14 35 35 H 1.08996 * 109.50347 * 177.59762 * 17 16 14 36 36 H 1.08998 * 109.46500 * 180.80389 * 18 17 16 37 37 H 1.08998 * 109.45615 * 60.83285 * 18 17 16 38 38 H 1.08006 * 120.84012 * 0.02921 * 21 20 19 39 39 H 1.08001 * 119.06927 * 179.97438 * 25 24 22 40 40 H 1.08998 * 109.46434 * 178.24713 * 27 19 18 41 41 H 1.08998 * 109.46323 * 58.27253 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.4151 -7.7610 0.5904 16 6 3.3778 -8.6532 0.6062 17 6 2.8577 -10.0922 0.5474 18 6 2.5461 -10.4578 -0.9056 19 7 1.5388 -9.5321 -1.4394 20 6 1.1374 -9.9135 -2.7097 21 6 0.6319 -11.1931 -2.9383 22 6 0.2439 -11.5258 -4.2252 23 9 -0.2520 -12.7532 -4.4946 24 7 0.3647 -10.6223 -5.1908 25 6 0.8465 -9.4219 -4.9396 26 7 1.2225 -9.0627 -3.7290 27 6 2.0340 -8.1496 -1.4370 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7314 0.8906 31 1 3.8008 -6.1836 0.0006 32 1 4.3057 -8.5779 0.0393 33 1 3.5601 -8.3740 1.6439 34 1 1.9509 -10.1762 1.1462 35 1 3.6167 -10.7698 0.9383 36 1 2.1620 -11.4769 -0.9494 37 1 3.4563 -10.3869 -1.5011 38 1 0.5445 -11.9061 -2.1318 39 1 0.9318 -8.7110 -5.7481 40 1 1.2780 -7.4923 -1.8664 41 1 2.9465 -8.0896 -2.0300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096167002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -41.725668 kcal Electronic energy + Delta-G solvation = -26254.038818 eV Core-core repulsion = 22209.186327 eV Total energy + Delta-G solvation = -4044.852491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.32930 -42.41937 -40.98684 -39.62796 -36.46219 -34.68790 -34.57134 -33.54891 -32.15701 -31.69947 -29.58984 -27.64814 -26.48292 -25.88089 -23.92401 -23.68773 -21.68561 -21.20072 -19.78336 -19.59958 -19.32550 -17.80785 -17.66762 -17.48083 -16.99551 -16.87096 -16.61804 -16.44819 -16.08992 -16.00429 -15.73944 -15.45963 -15.35426 -14.78144 -14.74126 -14.66463 -14.40490 -14.18788 -13.68713 -13.55201 -13.16279 -12.86813 -12.76382 -12.62030 -12.27091 -12.10350 -11.85478 -11.76097 -11.70575 -11.59188 -11.12199 -10.99684 -10.92830 -10.68450 -10.26557 -10.19662 -9.70271 -8.65989 -8.33832 -6.11925 -0.33860 -0.24408 1.26761 1.44383 1.46654 1.55670 1.60152 1.92421 2.22287 2.28137 2.36471 2.51210 2.99936 3.00263 3.32481 3.45684 3.63694 3.71350 3.81105 3.90190 3.95141 4.01509 4.14034 4.18452 4.32660 4.43279 4.50763 4.51971 4.56794 4.60972 4.72817 4.85877 5.02593 5.10828 5.16409 5.27674 5.36038 5.42267 5.48484 5.74209 5.83950 6.20294 6.51420 6.83934 7.07305 7.25896 8.75113 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.002253 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.636106 B =12422.768982 C =13583.792808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.280 1.280 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.535 3.465 12 O -0.562 6.562 13 N -0.706 5.706 14 C 0.147 3.853 15 H 0.069 0.931 16 C -0.123 4.123 17 C -0.109 4.109 18 C 0.051 3.949 19 N -0.472 5.472 20 C 0.376 3.624 21 C -0.258 4.258 22 C 0.360 3.640 23 F -0.101 7.101 24 N -0.592 5.592 25 C 0.360 3.640 26 N -0.582 5.582 27 C 0.067 3.933 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.419 0.581 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.187 0.813 39 H 0.233 0.767 40 H 0.055 0.945 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 -26.724 -2.488 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.205 1.205 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.321 3.679 12 O -0.440 6.440 13 N -0.361 5.361 14 C 0.042 3.958 15 H 0.087 0.913 16 C -0.161 4.161 17 C -0.147 4.147 18 C -0.073 4.073 19 N -0.189 5.189 20 C 0.136 3.864 21 C -0.285 4.285 22 C 0.201 3.799 23 F -0.080 7.080 24 N -0.316 5.316 25 C 0.072 3.928 26 N -0.304 5.304 27 C -0.061 4.061 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.256 0.744 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.204 0.796 39 H 0.249 0.751 40 H 0.073 0.927 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.788 -26.412 -2.784 28.305 hybrid contribution 1.701 0.849 -0.138 1.907 sum 11.490 -25.563 -2.923 28.178 Atomic orbital electron populations 1.70185 1.08014 1.28644 1.48025 1.26146 0.95959 1.03378 0.93777 0.85004 0.77793 0.75665 0.79539 1.20522 1.18536 1.18648 1.23173 0.95360 0.91961 1.58845 0.89803 1.85624 1.10690 0.99325 1.97055 1.23370 1.03486 0.94261 1.06871 1.20104 0.86276 0.86741 0.74753 1.90710 1.17511 1.86015 1.49760 1.45711 1.10325 1.04459 1.75567 1.20982 0.99089 0.80897 0.94845 0.91319 1.21928 0.97410 0.94123 1.02640 1.21613 1.03160 0.95716 0.94186 1.22639 0.91840 0.95752 0.97034 1.58691 1.39715 1.05572 1.14895 1.20156 0.89384 0.88398 0.88448 1.22115 1.08976 0.99396 0.97995 1.18269 0.90681 0.81112 0.89822 1.91668 1.83897 1.37691 1.94695 1.67907 1.21552 1.04808 1.37289 1.25213 0.85286 0.89262 0.93072 1.68529 1.23269 1.37560 1.01041 1.22255 0.99819 0.86557 0.97495 0.92035 0.87234 0.86976 0.74370 0.89205 0.89365 0.90770 0.86612 0.87150 0.91904 0.79601 0.75091 0.92679 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.01 9.50 67.96 0.65 -30.37 16 8 H 0.08 4.39 7.80 -2.92 -0.02 4.36 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 11 C 0.54 19.21 7.81 87.66 0.68 19.89 16 12 O -0.56 -25.98 15.53 -3.01 -0.05 -26.03 16 13 N -0.71 -16.43 5.08 -442.28 -2.25 -18.68 16 14 C 0.15 3.05 2.62 45.04 0.12 3.17 16 15 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 16 C -0.12 -1.28 5.47 30.67 0.17 -1.12 16 17 C -0.11 -0.80 6.09 30.65 0.19 -0.61 16 18 C 0.05 0.49 5.25 86.33 0.45 0.94 16 19 N -0.47 -8.69 4.68 -701.50 -3.28 -11.97 16 20 C 0.38 7.62 6.41 133.10 0.85 8.48 16 21 C -0.26 -4.25 9.26 22.62 0.21 -4.04 16 22 C 0.36 7.07 8.50 84.60 0.72 7.79 16 23 F -0.10 -1.90 17.30 44.97 0.78 -1.12 16 24 N -0.59 -12.87 10.45 -201.32 -2.10 -14.98 16 25 C 0.36 7.17 12.28 180.90 2.22 9.39 16 26 N -0.58 -13.37 8.85 -197.69 -1.75 -15.12 16 27 C 0.07 1.50 4.24 86.33 0.37 1.87 16 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 30 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.42 6.52 8.60 -92.71 -0.80 5.72 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.11 0.62 6.74 -2.39 -0.02 0.61 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.19 1.89 7.22 -2.91 -0.02 1.87 16 39 H 0.23 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.05 1.76 7.72 -2.39 -0.02 1.74 16 41 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 Total: -1.00 -82.03 362.80 0.31 -81.72 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.28 Total: 14.42 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 7.53 Total: 12.01 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -9.10 Total: -116.75 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.78 Total: -1.12 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -82.03 0.31 -81.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096167002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.999 kcal (2) G-P(sol) polarization free energy of solvation -82.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds