Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 119.99435 * 2 1 4 4 H 1.48504 * 109.46735 * 269.99824 * 3 2 1 5 5 H 1.48499 * 109.47272 * 29.99873 * 3 2 1 6 6 H 1.48497 * 109.47058 * 149.99874 * 3 2 1 7 7 C 1.38796 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00110 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99923 * 180.02562 * 7 2 1 10 10 C 1.80995 * 100.00037 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47375 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99772 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00224 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99985 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.53942 * 35.10493 * 14 13 11 16 16 C 1.53126 * 109.50092 * 155.20121 * 14 13 11 17 17 C 1.53099 * 109.15071 * 177.59316 * 16 14 13 18 18 C 1.53034 * 109.29509 * 302.33888 * 17 16 14 19 19 N 1.46847 * 109.51345 * 59.18740 * 18 17 16 20 20 C 1.39155 * 111.00102 * 174.16798 * 19 18 17 21 21 C 1.39210 * 120.05864 * 55.76649 * 20 19 18 22 22 N 1.32013 * 119.92801 * 179.70639 * 21 20 19 23 23 C 1.32399 * 120.05273 * 0.57107 * 22 21 20 24 24 F 1.35109 * 119.93510 * 179.72537 * 23 22 21 25 25 C 1.38470 * 120.12500 * 359.70801 * 23 22 21 26 26 N 1.32206 * 120.06622 * 359.97438 * 25 23 22 27 27 C 1.46854 * 111.19790 * 298.26320 * 19 18 17 28 28 H 0.96992 * 120.00829 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47427 * 59.99737 * 10 9 7 30 30 H 1.09001 * 109.47367 * 299.99807 * 10 9 7 31 31 H 0.97005 * 120.00355 * 0.02562 * 13 11 10 32 32 H 1.08990 * 109.52264 * 297.49980 * 16 14 13 33 33 H 1.09002 * 109.52383 * 57.62765 * 16 14 13 34 34 H 1.09007 * 109.48839 * 182.39531 * 17 16 14 35 35 H 1.09009 * 109.50682 * 62.29317 * 17 16 14 36 36 H 1.09002 * 109.46271 * 299.17460 * 18 17 16 37 37 H 1.08994 * 109.46242 * 179.19760 * 18 17 16 38 38 H 1.08000 * 120.04001 * 0.02562 * 21 20 19 39 39 H 1.08000 * 119.96238 * 180.02562 * 25 23 22 40 40 H 1.08993 * 109.46229 * 181.76227 * 27 19 18 41 41 H 1.09008 * 109.45803 * 301.73838 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0868 -2.9842 0.0009 11 6 5.5733 -3.2321 0.0008 12 8 6.3442 -2.2959 0.0014 13 7 6.0460 -4.4943 0.0011 14 6 7.4910 -4.7352 0.0016 15 1 7.9886 -3.9662 0.5923 16 6 7.7796 -6.1117 0.6073 17 6 9.2857 -6.3804 0.5489 18 6 9.7590 -6.2930 -0.9038 19 7 9.4611 -4.9577 -1.4373 20 6 9.9948 -4.7997 -2.7126 21 6 9.6642 -5.6982 -3.7232 22 7 10.1675 -5.5425 -4.9336 23 6 10.9948 -4.5395 -5.1837 24 9 11.5129 -4.3857 -6.4220 25 6 11.3298 -3.6478 -4.1787 26 7 10.8236 -3.7955 -2.9663 27 6 8.0161 -4.6953 -1.4353 28 1 -0.4851 0.8399 -0.0004 29 1 3.6442 -3.4312 -0.8893 30 1 3.6436 -3.4316 0.8907 31 1 5.4295 -5.2432 0.0011 32 1 7.4461 -6.1302 1.6448 33 1 7.2497 -6.8773 0.0406 34 1 9.4927 -7.3767 0.9398 35 1 9.8115 -5.6372 1.1483 36 1 9.2429 -7.0457 -1.4998 37 1 10.8336 -6.4698 -0.9469 38 1 8.9926 -6.5189 -3.5185 39 1 12.0045 -2.8304 -4.3857 40 1 7.8251 -3.7119 -1.8647 41 1 7.5082 -5.4556 -2.0288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096168147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -39.122882 kcal Electronic energy + Delta-G solvation = -26275.460521 eV Core-core repulsion = 22230.720895 eV Total energy + Delta-G solvation = -4044.739626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.29323 -42.54800 -41.02601 -39.55802 -36.30411 -35.51882 -34.67644 -34.01586 -31.84544 -30.87491 -29.56207 -27.84695 -26.36443 -26.15031 -24.20814 -23.73767 -21.71257 -21.17368 -19.86686 -19.48950 -19.29214 -18.71872 -17.85246 -17.57131 -17.18678 -16.93401 -16.73981 -16.10500 -16.07117 -15.84518 -15.72677 -15.34365 -15.07881 -14.94588 -14.76525 -14.68312 -14.49593 -14.11142 -13.69538 -13.59512 -13.34981 -13.03352 -12.97735 -12.74648 -12.65527 -12.48457 -11.97560 -11.86283 -11.74870 -11.66312 -11.17846 -10.98478 -10.94468 -10.52786 -10.38077 -10.14438 -9.47321 -8.99809 -8.52133 -6.22514 -0.71168 -0.27978 0.98675 1.30377 1.46002 1.53036 1.55874 1.91101 2.12118 2.22388 2.23919 2.36176 2.72593 2.86266 2.92700 3.38787 3.45949 3.64628 3.76217 3.81530 3.92296 4.02152 4.14017 4.16811 4.19224 4.25980 4.47051 4.49322 4.58726 4.62841 4.79215 4.84970 4.97068 5.11646 5.22540 5.31815 5.42308 5.57968 5.70468 5.77074 6.00035 6.11278 6.46647 6.48842 6.93501 7.21459 8.60192 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.002494 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.724980 B =11222.582258 C =12647.368022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.526 4.526 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.560 6.560 13 N -0.705 5.705 14 C 0.153 3.847 15 H 0.068 0.932 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.055 3.945 19 N -0.504 5.504 20 C 0.249 3.751 21 C 0.073 3.927 22 N -0.478 5.478 23 C 0.241 3.759 24 F -0.101 7.101 25 C 0.063 3.937 26 N -0.424 5.424 27 C 0.062 3.938 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.420 0.580 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.205 0.795 39 H 0.214 0.786 40 H 0.045 0.955 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.559 -19.972 -3.851 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.261 4.261 11 C 0.321 3.679 12 O -0.437 6.437 13 N -0.360 5.360 14 C 0.047 3.953 15 H 0.087 0.913 16 C -0.158 4.158 17 C -0.145 4.145 18 C -0.070 4.070 19 N -0.228 5.228 20 C 0.017 3.983 21 C -0.091 4.091 22 N -0.198 5.198 23 C 0.086 3.914 24 F -0.081 7.081 25 C -0.099 4.099 26 N -0.139 5.139 27 C -0.065 4.065 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.258 0.742 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.222 0.778 39 H 0.230 0.770 40 H 0.063 0.937 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.912 -17.973 -3.565 30.924 hybrid contribution -1.731 -0.680 -1.025 2.123 sum 23.181 -18.653 -4.590 30.106 Atomic orbital electron populations 1.70006 1.07249 1.28999 1.49245 1.25542 0.95251 1.02185 0.92989 0.85893 0.80719 0.79795 0.80129 1.18870 1.18342 1.16114 1.22455 0.90197 0.96688 1.58056 0.91762 1.84793 1.06482 1.06553 1.97589 1.23276 0.95871 0.99379 1.07618 1.20017 0.89360 0.83574 0.74998 1.90723 1.59303 1.43935 1.49787 1.45723 1.08068 1.06842 1.75331 1.20901 0.79618 0.99966 0.94792 0.91346 1.21893 0.97708 0.93581 1.02620 1.21541 0.94335 1.04000 0.94597 1.22459 1.02240 0.85318 0.96976 1.58416 1.13552 1.32816 1.18020 1.20706 0.94334 0.91861 0.91445 1.24461 0.97788 1.00599 0.86282 1.67694 1.08494 1.20044 1.23611 1.19346 0.95120 0.94407 0.82540 1.91671 1.83408 1.94322 1.38655 1.24034 0.99818 0.99710 0.86373 1.68201 1.06465 1.19104 1.20104 1.22449 0.84595 1.00994 0.98502 0.91380 0.86762 0.86532 0.74172 0.89695 0.88543 0.87192 0.91737 0.91067 0.89757 0.77846 0.76965 0.93651 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 2 C 0.05 2.68 5.50 84.86 0.47 3.14 16 3 Si 0.91 45.13 27.74 68.60 1.90 47.04 16 4 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 7 C -0.53 -30.35 10.04 67.95 0.68 -29.67 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.05 18.55 -56.49 -1.05 -10.09 16 10 C -0.11 -3.96 6.16 71.24 0.44 -3.53 16 11 C 0.53 17.36 7.81 87.66 0.68 18.04 16 12 O -0.56 -23.57 15.53 -3.03 -0.05 -23.62 16 13 N -0.71 -14.32 5.08 -442.29 -2.25 -16.57 16 14 C 0.15 2.79 2.61 45.05 0.12 2.91 16 15 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 16 C -0.12 -1.06 5.47 30.67 0.17 -0.89 16 17 C -0.11 -0.81 6.09 30.64 0.19 -0.62 16 18 C 0.06 0.52 5.05 86.32 0.44 0.95 16 19 N -0.50 -8.74 4.71 -701.52 -3.30 -12.04 16 20 C 0.25 4.69 5.69 132.96 0.76 5.45 16 21 C 0.07 1.13 9.91 84.90 0.84 1.97 16 22 N -0.48 -9.26 10.50 -195.80 -2.06 -11.32 16 23 C 0.24 4.43 8.43 84.66 0.71 5.14 16 24 F -0.10 -1.83 17.29 44.97 0.78 -1.06 16 25 C 0.06 1.06 11.20 84.69 0.95 2.01 16 26 N -0.42 -9.17 10.53 -192.41 -2.03 -11.19 16 27 C 0.06 1.18 4.79 86.32 0.41 1.59 16 28 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.42 5.34 8.60 -92.70 -0.80 4.55 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 0.32 7.13 -2.39 -0.02 0.31 16 37 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 38 H 0.20 1.74 7.12 -2.91 -0.02 1.72 16 39 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 41 H 0.07 0.95 7.79 -2.38 -0.02 0.93 16 Total: -1.00 -80.10 361.30 -0.65 -80.75 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.24 Total: 6.97 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.85 Total: 6.50 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -9.33 Total: -106.49 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.06 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.09 kcal Total: -80.10 -0.65 -80.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096168147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.626 kcal (2) G-P(sol) polarization free energy of solvation -80.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds